Definition | Borrelia hermsii DAH chromosome, complete genome. |
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Accession | NC_010673 |
Length | 922,307 |
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The map label for this gene is 187918443
Identifier: 187918443
GI number: 187918443
Start: 605933
End: 606505
Strand: Direct
Name: 187918443
Synonym: BH0580
Alternate gene names: NA
Gene position: 605933-606505 (Clockwise)
Preceding gene: 187918442
Following gene: 187918444
Centisome position: 65.7
GC content: 27.4
Gene sequence:
>573_bases GTGATAATAGAGACTTTAATTGTATTTTTAAACATTTATAGAATTTTAATTTTGGTTAGAATTCTTCTTAGTTGGCTTGT ATCCTCAGGAATTAATACTAGTGCGTTTTTTAGATTTATATATAATTCAACAGAACCATTTTTATCTATTTTTAGAAGGA TTAGGTTTTTTAGGATTGGCATATATGATTTTTCGCCCATTGCAGCTTTAATTACTATTACAATAGTTGAGAGAATGTTA TCTTATGGTGATTATAAACTGTCTACATTTGTTATATTGTTTATTATTGAAGTTTGGGGAATATTGAGAAGTGTTTTTTT TGCTCTTATTTTTTTCTTTGTTTTGAGGTTAATATTTTTGGTTTTACATCTATTTGATGATACTGATTTCATGAAAAGCG TTGATTCATTGTTAATGCCCCTGTCTGTTAAGATAAACAATATAGTTACAGATAAGCATATGTCTTATGCTATTAGTTTA ATTGTGGCAGGAGCATTGTTATTGGCATTTATAATCATTTGTGAGCAAGCTATATGGGCTATTAGTATTCTAGGCTTTTA TTTACCTTTTTAG
Upstream 100 bases:
>100_bases TGGACTTGACTTTAAGCTTTAAACCTGATGAGTCTAAGCTTAATGAGTTGAGATGTCATAAGATAGTGGAGGATATTTGG TTTGATTAGGAGGATTAGTT
Downstream 100 bases:
>100_bases GAATTTTAGTGTTTTTACATGAATTTAAATATGACCTGCAAGGTATAAGTGGCCTTGGTAAGAAAGGGCTTGAGAGATTA AATAGTCTTCACATTACAAA
Product: integral membrane protein, YggT family
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 190; Mature: 190
Protein sequence:
>190_residues MIIETLIVFLNIYRILILVRILLSWLVSSGINTSAFFRFIYNSTEPFLSIFRRIRFFRIGIYDFSPIAALITITIVERML SYGDYKLSTFVILFIIEVWGILRSVFFALIFFFVLRLIFLVLHLFDDTDFMKSVDSLLMPLSVKINNIVTDKHMSYAISL IVAGALLLAFIIICEQAIWAISILGFYLPF
Sequences:
>Translated_190_residues MIIETLIVFLNIYRILILVRILLSWLVSSGINTSAFFRFIYNSTEPFLSIFRRIRFFRIGIYDFSPIAALITITIVERML SYGDYKLSTFVILFIIEVWGILRSVFFALIFFFVLRLIFLVLHLFDDTDFMKSVDSLLMPLSVKINNIVTDKHMSYAISL IVAGALLLAFIIICEQAIWAISILGFYLPF >Mature_190_residues MIIETLIVFLNIYRILILVRILLSWLVSSGINTSAFFRFIYNSTEPFLSIFRRIRFFRIGIYDFSPIAALITITIVERML SYGDYKLSTFVILFIIEVWGILRSVFFALIFFFVLRLIFLVLHLFDDTDFMKSVDSLLMPLSVKINNIVTDKHMSYAISL IVAGALLLAFIIICEQAIWAISILGFYLPF
Specific function: Unknown
COG id: COG0762
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22050; Mature: 22050
Theoretical pI: Translated: 8.98; Mature: 8.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIETLIVFLNIYRILILVRILLSWLVSSGINTSAFFRFIYNSTEPFLSIFRRIRFFRIG CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHC IYDFSPIAALITITIVERMLSYGDYKLSTFVILFIIEVWGILRSVFFALIFFFVLRLIFL CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLHLFDDTDFMKSVDSLLMPLSVKINNIVTDKHMSYAISLIVAGALLLAFIIICEQAIWA HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISILGFYLPF HHHHHHHCCC >Mature Secondary Structure MIIETLIVFLNIYRILILVRILLSWLVSSGINTSAFFRFIYNSTEPFLSIFRRIRFFRIG CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHC IYDFSPIAALITITIVERMLSYGDYKLSTFVILFIIEVWGILRSVFFALIFFFVLRLIFL CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLHLFDDTDFMKSVDSLLMPLSVKINNIVTDKHMSYAISLIVAGALLLAFIIICEQAIWA HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISILGFYLPF HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA