Click here to switch to the map view.

The map label for this gene is oppC [H]

Identifier: 187918203

GI number: 187918203

Start: 344479

End: 345540

Strand: Direct

Name: oppC [H]

Synonym: BH0333

Alternate gene names: 187918203

Gene position: 344479-345540 (Clockwise)

Preceding gene: 187918202

Following gene: 187918204

Centisome position: 37.35

GC content: 32.39

Gene sequence:

>1062_bases
GTGAACAGAATGAATGAATATGAAAAACAAGACACTTGCGTTGAAATCCAAACAGCAAACAAAAGAGCTTGGTTAAGATT
TAAGGAAAATAAACTCGCATTTATTAGTATATTTATCATCGGATTTTACATACTAATTGCAATACTAAGACCAATACTAC
CAACGTACAAATACTATACCCAAATAGTAGAACATGCTGATTTGCCCCCATCTCTTAAGTATGCCGGAGAACTCTGGTAT
GAAAAAGAACTTAACTTCATAAAAAGATTAGCAGCAAAAGAAAAACGAGAAATAAACGAAGAAGAAAAAGCGAAACTAGA
AGAAATCAAAAGAAAAATAGAAACCGATGTTCAAAAAATTGATGGAAAAGAAATTAAAATACACAAAAGAATATACCTAC
TAGGAACAGATAGTCTTGGAAGAGACTTGCTTGCAAGAATCATACAAGGAAGTCAGATATCAATATCTGTGGGCTTTATT
GGGGCATTTATATCAATGATCATAGGCACTATAATAGGTGCGGTAGCGGGATTCTTTGGCGGTATTATCGATAGGATAAT
AACTAAAATAATAGAAATCCTTTATGTCCTACCTACCTTACTTGTCATAATAACTTTAATGACTATTATGGAAAGGAATG
TCATCGGATTATTTATTGCAATTAGCATCATCTCATGGCTAACAATTGCCAGAATCGTAAGAGGACAAGTAAAATCACTT
GCAACATCTGAATTTATACAGGTAGCTAGAACATTAGGTGCAACAAATAGTAGAATGATATTCAAACATTTAATTCCTAA
TAGCTTTGGAATGATAGTAATAATTACAACAATGAATGTCCCATCATTCATTATGCTTGAATCATTTCTATCATTTCTAG
GTCTTGGAATATCAGCACCAATGACTAGTTGGGGAGAATTAATAAAAAATGGAATTCCTACATTTATTGAATACCCATGG
AAAATCTTCATTCCAGCAACAGTCATGACAATATTCTTACTATTTATGAACTTTTTAGGCGATGGACTAAGAGATGCATT
TGATCCAAAAGATAACCTTTAG

Upstream 100 bases:

>100_bases
CCCGCTACTCATGGGTTCACTATTAGTATATTCAACAATATTGCTTATCTCCATTTTAGCATCTGATATTGTTTATAAAA
AACTTGATCCAAGAACATAG

Downstream 100 bases:

>100_bases
GAGACATTAATGAGAGAAGACTATATACTGGACATAAGAAATCTATCAATTGAATTTAAGTTAAAGCATACAACAATACA
TCCTGTAAACAACATAAATT

Product: oligopeptide transport system permease protein OppC

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KC [H]

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MNRMNEYEKQDTCVEIQTANKRAWLRFKENKLAFISIFIIGFYILIAILRPILPTYKYYTQIVEHADLPPSLKYAGELWY
EKELNFIKRLAAKEKREINEEEKAKLEEIKRKIETDVQKIDGKEIKIHKRIYLLGTDSLGRDLLARIIQGSQISISVGFI
GAFISMIIGTIIGAVAGFFGGIIDRIITKIIEILYVLPTLLVIITLMTIMERNVIGLFIAISIISWLTIARIVRGQVKSL
ATSEFIQVARTLGATNSRMIFKHLIPNSFGMIVIITTMNVPSFIMLESFLSFLGLGISAPMTSWGELIKNGIPTFIEYPW
KIFIPATVMTIFLLFMNFLGDGLRDAFDPKDNL

Sequences:

>Translated_353_residues
MNRMNEYEKQDTCVEIQTANKRAWLRFKENKLAFISIFIIGFYILIAILRPILPTYKYYTQIVEHADLPPSLKYAGELWY
EKELNFIKRLAAKEKREINEEEKAKLEEIKRKIETDVQKIDGKEIKIHKRIYLLGTDSLGRDLLARIIQGSQISISVGFI
GAFISMIIGTIIGAVAGFFGGIIDRIITKIIEILYVLPTLLVIITLMTIMERNVIGLFIAISIISWLTIARIVRGQVKSL
ATSEFIQVARTLGATNSRMIFKHLIPNSFGMIVIITTMNVPSFIMLESFLSFLGLGISAPMTSWGELIKNGIPTFIEYPW
KIFIPATVMTIFLLFMNFLGDGLRDAFDPKDNL
>Mature_353_residues
MNRMNEYEKQDTCVEIQTANKRAWLRFKENKLAFISIFIIGFYILIAILRPILPTYKYYTQIVEHADLPPSLKYAGELWY
EKELNFIKRLAAKEKREINEEEKAKLEEIKRKIETDVQKIDGKEIKIHKRIYLLGTDSLGRDLLARIIQGSQISISVGFI
GAFISMIIGTIIGAVAGFFGGIIDRIITKIIEILYVLPTLLVIITLMTIMERNVIGLFIAISIISWLTIARIVRGQVKSL
ATSEFIQVARTLGATNSRMIFKHLIPNSFGMIVIITTMNVPSFIMLESFLSFLGLGISAPMTSWGELIKNGIPTFIEYPW
KIFIPATVMTIFLLFMNFLGDGLRDAFDPKDNL

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane. Also required for sporulation and competence [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=220, Percent_Identity=43.1818181818182, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1787054, Length=219, Percent_Identity=36.0730593607306, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI1787760, Length=219, Percent_Identity=31.0502283105023, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1788505, Length=355, Percent_Identity=26.7605633802817, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1789889, Length=236, Percent_Identity=27.9661016949153, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1789964, Length=219, Percent_Identity=31.0502283105023, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787549, Length=219, Percent_Identity=27.8538812785388, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40183; Mature: 40183

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRMNEYEKQDTCVEIQTANKRAWLRFKENKLAFISIFIIGFYILIAILRPILPTYKYYT
CCCCHHHHCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIVEHADLPPSLKYAGELWYEKELNFIKRLAAKEKREINEEEKAKLEEIKRKIETDVQKI
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
DGKEIKIHKRIYLLGTDSLGRDLLARIIQGSQISISVGFIGAFISMIIGTIIGAVAGFFG
CCCEEEEEEEEEEEECCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH
GIIDRIITKIIEILYVLPTLLVIITLMTIMERNVIGLFIAISIISWLTIARIVRGQVKSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATSEFIQVARTLGATNSRMIFKHLIPNSFGMIVIITTMNVPSFIMLESFLSFLGLGISAP
HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCC
MTSWGELIKNGIPTFIEYPWKIFIPATVMTIFLLFMNFLGDGLRDAFDPKDNL
HHHHHHHHHCCCCHHHHCCHHEEEHHHHHHHHHHHHHHHCCHHHHCCCCCCCC
>Mature Secondary Structure
MNRMNEYEKQDTCVEIQTANKRAWLRFKENKLAFISIFIIGFYILIAILRPILPTYKYYT
CCCCHHHHCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIVEHADLPPSLKYAGELWYEKELNFIKRLAAKEKREINEEEKAKLEEIKRKIETDVQKI
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
DGKEIKIHKRIYLLGTDSLGRDLLARIIQGSQISISVGFIGAFISMIIGTIIGAVAGFFG
CCCEEEEEEEEEEEECCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH
GIIDRIITKIIEILYVLPTLLVIITLMTIMERNVIGLFIAISIISWLTIARIVRGQVKSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATSEFIQVARTLGATNSRMIFKHLIPNSFGMIVIITTMNVPSFIMLESFLSFLGLGISAP
HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCC
MTSWGELIKNGIPTFIEYPWKIFIPATVMTIFLLFMNFLGDGLRDAFDPKDNL
HHHHHHHHHCCCCHHHHCCHHEEEHHHHHHHHHHHHHHHCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]