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The map label for this gene is oppB [H]

Identifier: 187918202

GI number: 187918202

Start: 343558

End: 344478

Strand: Direct

Name: oppB [H]

Synonym: BH0332

Alternate gene names: 187918202

Gene position: 343558-344478 (Clockwise)

Preceding gene: 187918201

Following gene: 187918203

Centisome position: 37.25

GC content: 31.92

Gene sequence:

>921_bases
ATGTTAAAGTTTACCATACAAAAATTACTAGAAACAATACCCACTTTAATAGCAATAACTTTTTTGTGTTTTTTAATAAT
GAGACTTGCTCCCGGAAATCCATTTGATTCTGAGAAACCTATTGATCCTCAAGTCAAAGAAAAACTGATGCAAAAATACC
ATCTTGATAAACCTTTTTATATGCAAGCTTACTATTACATTACAAACATTTTAAAAGGAGATTTTGGGCCATCATTAGTA
AAGAAAGATTTAAATGTCAGCCAATACATAAAATTAGGATTTCCTAAGTCATTTACAATCGGAATAATAAGCTTAATAAT
ATCTCTCACACTTGGAATTTTGCTGGGATCATTAGCAGCAATAAAAAAAAATACTCGAATCGACTATATAATAAGAGTAG
CAGCAATATTTGGAATTTCCGTACCCACCTTTGTAACTGGTCCTATTTTACAATATTTCCTATCTGTAAAGTTAAAATTA
TTTTACACTTCTGGATGGATTTCAGAACGTGGAGGTCTTGCAAATTTAGTTATGCCAATATTAACAATGAGTTTGCCATG
GATAGCTATTTTTACACGCATCATTAGAGGTTCTATGCTAGAAATACTAAAGAGTGATTTTGTAAGAACAGCAAAAGCTA
AGGGGCTTAGCTTTAATGTCATAATAAGAAAACATGTATTAATAGGCTCTATGCTCCCTCTCATAAGCTATGTAGGTCCT
GCATTTGCTGGTATCATTTCTGGTAGTATGGTCATTGAACAAATATTTAGAATTGCTGGAATGGGTATATTTACAGTAGA
AGCATCTCTAAACAGGGACTACCCGCTACTCATGGGTTCACTATTAGTATATTCAACAATATTGCTTATCTCCATTTTAG
CATCTGATATTGTTTATAAAAAACTTGATCCAAGAACATAG

Upstream 100 bases:

>100_bases
CAACTAAAATAAATTCAAAATTTTTGAATAATATTAAGTCCCATGTGTTAAAATCATTTATTATACAAATAAAATCTTTC
TATGATGATAAGGAACAATT

Downstream 100 bases:

>100_bases
GTGAACAGAATGAATGAATATGAAAAACAAGACACTTGCGTTGAAATCCAAACAGCAAACAAAAGAGCTTGGTTAAGATT
TAAGGAAAATAAACTCGCAT

Product: oligopeptide transport system permease protein OppB

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLKFTIQKLLETIPTLIAITFLCFLIMRLAPGNPFDSEKPIDPQVKEKLMQKYHLDKPFYMQAYYYITNILKGDFGPSLV
KKDLNVSQYIKLGFPKSFTIGIISLIISLTLGILLGSLAAIKKNTRIDYIIRVAAIFGISVPTFVTGPILQYFLSVKLKL
FYTSGWISERGGLANLVMPILTMSLPWIAIFTRIIRGSMLEILKSDFVRTAKAKGLSFNVIIRKHVLIGSMLPLISYVGP
AFAGIISGSMVIEQIFRIAGMGIFTVEASLNRDYPLLMGSLLVYSTILLISILASDIVYKKLDPRT

Sequences:

>Translated_306_residues
MLKFTIQKLLETIPTLIAITFLCFLIMRLAPGNPFDSEKPIDPQVKEKLMQKYHLDKPFYMQAYYYITNILKGDFGPSLV
KKDLNVSQYIKLGFPKSFTIGIISLIISLTLGILLGSLAAIKKNTRIDYIIRVAAIFGISVPTFVTGPILQYFLSVKLKL
FYTSGWISERGGLANLVMPILTMSLPWIAIFTRIIRGSMLEILKSDFVRTAKAKGLSFNVIIRKHVLIGSMLPLISYVGP
AFAGIISGSMVIEQIFRIAGMGIFTVEASLNRDYPLLMGSLLVYSTILLISILASDIVYKKLDPRT
>Mature_306_residues
MLKFTIQKLLETIPTLIAITFLCFLIMRLAPGNPFDSEKPIDPQVKEKLMQKYHLDKPFYMQAYYYITNILKGDFGPSLV
KKDLNVSQYIKLGFPKSFTIGIISLIISLTLGILLGSLAAIKKNTRIDYIIRVAAIFGISVPTFVTGPILQYFLSVKLKL
FYTSGWISERGGLANLVMPILTMSLPWIAIFTRIIRGSMLEILKSDFVRTAKAKGLSFNVIIRKHVLIGSMLPLISYVGP
AFAGIISGSMVIEQIFRIAGMGIFTVEASLNRDYPLLMGSLLVYSTILLISILASDIVYKKLDPRT

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=307, Percent_Identity=41.3680781758958, Blast_Score=244, Evalue=4e-66,
Organism=Escherichia coli, GI1787053, Length=308, Percent_Identity=32.4675324675325, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1789965, Length=335, Percent_Identity=30.4477611940298, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=29.0322580645161, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI1788504, Length=359, Percent_Identity=27.8551532033426, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1787761, Length=327, Percent_Identity=28.4403669724771, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1787550, Length=267, Percent_Identity=23.9700374531835, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34173; Mature: 34173

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50928 ABC_TM1 ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFTIQKLLETIPTLIAITFLCFLIMRLAPGNPFDSEKPIDPQVKEKLMQKYHLDKPFY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHH
MQAYYYITNILKGDFGPSLVKKDLNVSQYIKLGFPKSFTIGIISLIISLTLGILLGSLAA
HHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IKKNTRIDYIIRVAAIFGISVPTFVTGPILQYFLSVKLKLFYTSGWISERGGLANLVMPI
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEECCCHHCCCCHHHHHHHH
LTMSLPWIAIFTRIIRGSMLEILKSDFVRTAKAKGLSFNVIIRKHVLIGSMLPLISYVGP
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHH
AFAGIISGSMVIEQIFRIAGMGIFTVEASLNRDYPLLMGSLLVYSTILLISILASDIVYK
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLDPRT
HCCCCC
>Mature Secondary Structure
MLKFTIQKLLETIPTLIAITFLCFLIMRLAPGNPFDSEKPIDPQVKEKLMQKYHLDKPFY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHH
MQAYYYITNILKGDFGPSLVKKDLNVSQYIKLGFPKSFTIGIISLIISLTLGILLGSLAA
HHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IKKNTRIDYIIRVAAIFGISVPTFVTGPILQYFLSVKLKLFYTSGWISERGGLANLVMPI
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEECCCHHCCCCHHHHHHHH
LTMSLPWIAIFTRIIRGSMLEILKSDFVRTAKAKGLSFNVIIRKHVLIGSMLPLISYVGP
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHH
AFAGIISGSMVIEQIFRIAGMGIFTVEASLNRDYPLLMGSLLVYSTILLISILASDIVYK
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLDPRT
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]