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The map label for this gene is yebA [H]

Identifier: 187918129

GI number: 187918129

Start: 268635

End: 269573

Strand: Direct

Name: yebA [H]

Synonym: BH0255

Alternate gene names: 187918129

Gene position: 268635-269573 (Clockwise)

Preceding gene: 187918128

Following gene: 187918130

Centisome position: 29.13

GC content: 29.18

Gene sequence:

>939_bases
GTGCTTAATATTAAAAGCCTTTTATTTATATTGATAACAGGATTATTTAAGATAAATGCAGTAAATAATGATATCATAAA
AATTTACTATAAAAAAGAAGCTTTTCAGGGAGAAAATATCTACTTTGCAAGCACCAAAAATTTCAAAAAATTGTCTCTTT
TAGGTACAAATCAAAAACCTATTTTAAGTGCTTCCCCTTTCAAATTCAACGTAGGAAAAAGAGAATATCATATAGCCATA
ATAGGAGTCACACCAATGATCAAAGAAGGAAAAAAGAAAATCAAAATAGAATTTGCAAATAAAGAATACATAAAGGAAAT
AGAGATAAAAAAATTTGCATTTAAAAAAACAACAGTCAAACTTAACAAAACAAAATCCAAACTTATTAAAAGTCAACAAT
CACCTAAAGCAAAAGAACAAGCTCTCACGTTATGGAACATAATTGGCAATATAGGAGATACAACAATTTACCACTACGAT
ACATTGGTTCATCCAATAAAAGATCAATATAAAATAACTAGTCCTTATGGGGACCAAAGAATTTATATGCAAGACAATAA
AAAAATATCAAACCATAAAATGCATAATGGAAAAGATTATGCTCCACTTAAAAGAGAAAAAACACCTATTTTCGCAGCTG
GTAGAGGGAAAGTAGTATTTGCAAGAAATAGAGAAATTACTGGTAAGACCGTAATTATCCAACATTTACCAGGGGTATTT
ACAATTTATTTACATCTCTCAAAATTTGGAGTTAAAGAGCACAAAATAGTAAATACAGGAGAATATATTGGTCATGTTGG
CAACACAGGAATTTCAACAGGACCCCACCTACATTTCGAAGTCAGAATCAATGGCGTTGCAGTAAATCCAGATTTTTTCT
TAGAACAAATGCTTATTGACAAAAATCAAATAATCAATAACACTAAAAGGATAGAGTAA

Upstream 100 bases:

>100_bases
ATGGCCAAAATATAGACATAATATTCACAGTTGGTGAAGACCTTTACAATCAAAACGACAAAATTTTAAAAATTATTGAT
ATCAAAAAGAGAAAAAATTA

Downstream 100 bases:

>100_bases
AAATAAGGAGGTGATTTTTTGGTAACTGTCAATGTTGACAAAAATGAAGGACTAGAAAAAGCATTAAAACGTTTCAAACG
AATGATTGAAAAAGAAGCAA

Product: cell wall endopeptidase, family M23/M37

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MLNIKSLLFILITGLFKINAVNNDIIKIYYKKEAFQGENIYFASTKNFKKLSLLGTNQKPILSASPFKFNVGKREYHIAI
IGVTPMIKEGKKKIKIEFANKEYIKEIEIKKFAFKKTTVKLNKTKSKLIKSQQSPKAKEQALTLWNIIGNIGDTTIYHYD
TLVHPIKDQYKITSPYGDQRIYMQDNKKISNHKMHNGKDYAPLKREKTPIFAAGRGKVVFARNREITGKTVIIQHLPGVF
TIYLHLSKFGVKEHKIVNTGEYIGHVGNTGISTGPHLHFEVRINGVAVNPDFFLEQMLIDKNQIINNTKRIE

Sequences:

>Translated_312_residues
MLNIKSLLFILITGLFKINAVNNDIIKIYYKKEAFQGENIYFASTKNFKKLSLLGTNQKPILSASPFKFNVGKREYHIAI
IGVTPMIKEGKKKIKIEFANKEYIKEIEIKKFAFKKTTVKLNKTKSKLIKSQQSPKAKEQALTLWNIIGNIGDTTIYHYD
TLVHPIKDQYKITSPYGDQRIYMQDNKKISNHKMHNGKDYAPLKREKTPIFAAGRGKVVFARNREITGKTVIIQHLPGVF
TIYLHLSKFGVKEHKIVNTGEYIGHVGNTGISTGPHLHFEVRINGVAVNPDFFLEQMLIDKNQIINNTKRIE
>Mature_312_residues
MLNIKSLLFILITGLFKINAVNNDIIKIYYKKEAFQGENIYFASTKNFKKLSLLGTNQKPILSASPFKFNVGKREYHIAI
IGVTPMIKEGKKKIKIEFANKEYIKEIEIKKFAFKKTTVKLNKTKSKLIKSQQSPKAKEQALTLWNIIGNIGDTTIYHYD
TLVHPIKDQYKITSPYGDQRIYMQDNKKISNHKMHNGKDYAPLKREKTPIFAAGRGKVVFARNREITGKTVIIQHLPGVF
TIYLHLSKFGVKEHKIVNTGEYIGHVGNTGISTGPHLHFEVRINGVAVNPDFFLEQMLIDKNQIINNTKRIE

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=129, Percent_Identity=39.5348837209302, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 35735; Mature: 35735

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIKSLLFILITGLFKINAVNNDIIKIYYKKEAFQGENIYFASTKNFKKLSLLGTNQKP
CCCHHHHHHHHHHHHEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCC
ILSASPFKFNVGKREYHIAIIGVTPMIKEGKKKIKIEFANKEYIKEIEIKKFAFKKTTVK
EEECCCEEEECCCEEEEEEEEECCCCHHCCCEEEEEEECCHHHHHHHHHHHEEEEEEEEE
LNKTKSKLIKSQQSPKAKEQALTLWNIIGNIGDTTIYHYDTLVHPIKDQYKITSPYGDQR
EECHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCEEEECCCCCCE
IYMQDNKKISNHKMHNGKDYAPLKREKTPIFAAGRGKVVFARNREITGKTVIIQHLPGVF
EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCEEEEECCCCEE
TIYLHLSKFGVKEHKIVNTGEYIGHVGNTGISTGPHLHFEVRINGVAVNPDFFLEQMLID
EEEEEHHHCCCCCCEEEECCHHHCCCCCCCCCCCCEEEEEEEEEEEEECHHHHHHHHHHC
KNQIINNTKRIE
CHHHHCCCCCCC
>Mature Secondary Structure
MLNIKSLLFILITGLFKINAVNNDIIKIYYKKEAFQGENIYFASTKNFKKLSLLGTNQKP
CCCHHHHHHHHHHHHEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCC
ILSASPFKFNVGKREYHIAIIGVTPMIKEGKKKIKIEFANKEYIKEIEIKKFAFKKTTVK
EEECCCEEEECCCEEEEEEEEECCCCHHCCCEEEEEEECCHHHHHHHHHHHEEEEEEEEE
LNKTKSKLIKSQQSPKAKEQALTLWNIIGNIGDTTIYHYDTLVHPIKDQYKITSPYGDQR
EECHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCEEEECCCCCCE
IYMQDNKKISNHKMHNGKDYAPLKREKTPIFAAGRGKVVFARNREITGKTVIIQHLPGVF
EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCEEEEECCCCEE
TIYLHLSKFGVKEHKIVNTGEYIGHVGNTGISTGPHLHFEVRINGVAVNPDFFLEQMLID
EEEEEHHHCCCCCCEEEECCHHHCCCCCCCCCCCCEEEEEEEEEEEEECHHHHHHHHHHC
KNQIINNTKRIE
CHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]