| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is yqgX [H]
Identifier: 187736505
GI number: 187736505
Start: 2459621
End: 2460250
Strand: Reverse
Name: yqgX [H]
Synonym: Amuc_2026
Alternate gene names: 187736505
Gene position: 2460250-2459621 (Counterclockwise)
Preceding gene: 187736506
Following gene: 187736504
Centisome position: 92.35
GC content: 53.97
Gene sequence:
>630_bases ATGGATCGGATTCGCGTTTATACGGGTGGAGTTGCTTCCTGTAATGGTTACCTCTTTAAGACGAGGGATAACGCTTACGT GGCGGTGGACGCTCCGTCCGGCTTTGCGGACTGGATCTATTCCAAAAAGCCCGATATCATCATCACGGATCTTCTCATCA CCCACCAGCATTTTGACCATGTGGAGGATGCCTGCCGCATGCGCCAGATTTTCGACTGCCGCATTCATGCCGGGCAACCT TACAATGAAAGCCTGACGCTGGAAAAAATGGCCCGCGACGCCTGGGGACTTCCCCTCAATGTTCAGCCGTTTGTGGTGGA TGAAATACTTACTCCGGACATTCACACGGCGAATTGGGGCGGCCTGTTGTGGCATCTCCACCAGGTGCCCGGCCATTCTC CGGACAGCATTGTTTACGATTTGCCGGATGAAGGAATCATGTTCACAGGTGACGTCATTTTTGCCGGCTCCATCGGGCGG ACGGATCTCCCGGGAGGAAACCTGCGCCTGCTGAAACAGGGCATTGAAAAGAAAGTGCTCAACCAGCCCGCCACGACCAT GATTTTCCCGGGCCACGGTCCATATACCAACGTGAAAAACGAACTGCTGACCAATCCGTTCATCTCCTGA
Upstream 100 bases:
>100_bases CTGATATGAGGGGCTTTTCCAGGGGAAGATGACAGAAAGCTATTTAAGGGAACCGTCTTTATACTGGATATTCCGGGCAA TCTCACTACAATCCCTGCCC
Downstream 100 bases:
>100_bases CCGCGATTCCCGCGCCGCTGTACGGAATCGTGTTCTACTCTTTAGCAAGCATACAAGATCAATGTTATTTTCAGAATTAG GTTTATCGGAACCCGTCTTG
Product: beta-lactamase domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 209; Mature: 209
Protein sequence:
>209_residues MDRIRVYTGGVASCNGYLFKTRDNAYVAVDAPSGFADWIYSKKPDIIITDLLITHQHFDHVEDACRMRQIFDCRIHAGQP YNESLTLEKMARDAWGLPLNVQPFVVDEILTPDIHTANWGGLLWHLHQVPGHSPDSIVYDLPDEGIMFTGDVIFAGSIGR TDLPGGNLRLLKQGIEKKVLNQPATTMIFPGHGPYTNVKNELLTNPFIS
Sequences:
>Translated_209_residues MDRIRVYTGGVASCNGYLFKTRDNAYVAVDAPSGFADWIYSKKPDIIITDLLITHQHFDHVEDACRMRQIFDCRIHAGQP YNESLTLEKMARDAWGLPLNVQPFVVDEILTPDIHTANWGGLLWHLHQVPGHSPDSIVYDLPDEGIMFTGDVIFAGSIGR TDLPGGNLRLLKQGIEKKVLNQPATTMIFPGHGPYTNVKNELLTNPFIS >Mature_209_residues MDRIRVYTGGVASCNGYLFKTRDNAYVAVDAPSGFADWIYSKKPDIIITDLLITHQHFDHVEDACRMRQIFDCRIHAGQP YNESLTLEKMARDAWGLPLNVQPFVVDEILTPDIHTANWGGLLWHLHQVPGHSPDSIVYDLPDEGIMFTGDVIFAGSIGR TDLPGGNLRLLKQGIEKKVLNQPATTMIFPGHGPYTNVKNELLTNPFIS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallo-beta-lactamase superfamily. Glyoxalase II family [H]
Homologues:
Organism=Escherichia coli, GI1787158, Length=208, Percent_Identity=29.3269230769231, Blast_Score=82, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 23372; Mature: 23372
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRIRVYTGGVASCNGYLFKTRDNAYVAVDAPSGFADWIYSKKPDIIITDLLITHQHFDH CCEEEEEECCEECCCCEEEEECCCEEEEEECCCCHHHHHHCCCCCEEEEHHHHHHHHHHH VEDACRMRQIFDCRIHAGQPYNESLTLEKMARDAWGLPLNVQPFVVDEILTPDIHTANWG HHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEHHHHCCCCCCCCCCC GLLWHLHQVPGHSPDSIVYDLPDEGIMFTGDVIFAGSIGRTDLPGGNLRLLKQGIEKKVL HHEEEEECCCCCCCCCEEEECCCCCEEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHH NQPATTMIFPGHGPYTNVKNELLTNPFIS CCCCCEEEECCCCCCCCCHHHHHCCCCCC >Mature Secondary Structure MDRIRVYTGGVASCNGYLFKTRDNAYVAVDAPSGFADWIYSKKPDIIITDLLITHQHFDH CCEEEEEECCEECCCCEEEEECCCEEEEEECCCCHHHHHHCCCCCEEEEHHHHHHHHHHH VEDACRMRQIFDCRIHAGQPYNESLTLEKMARDAWGLPLNVQPFVVDEILTPDIHTANWG HHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEHHHHCCCCCCCCCCC GLLWHLHQVPGHSPDSIVYDLPDEGIMFTGDVIFAGSIGRTDLPGGNLRLLKQGIEKKVL HHEEEEECCCCCCCCCEEEECCCCCEEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHH NQPATTMIFPGHGPYTNVKNELLTNPFIS CCCCCEEEECCCCCCCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]