Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is aroE [H]
Identifier: 187736453
GI number: 187736453
Start: 2393426
End: 2394358
Strand: Direct
Name: aroE [H]
Synonym: Amuc_1971
Alternate gene names: 187736453
Gene position: 2393426-2394358 (Clockwise)
Preceding gene: 187736452
Following gene: 187736454
Centisome position: 89.84
GC content: 60.24
Gene sequence:
>933_bases ATGAAACCCTACTATACCCTGGCCGATCTTCTGGATGAAGAACATCCGTTTGACGCCGGGGAAACCGTTCCCGCCAGACT GGTCGTAATCGGTTTCCCCATTGCCCATTCCAAATCCCCCGCCATGCAGCAGGCCGCGCTGGATGCGGCGGGCATTCGCG CCCGGTATATCCGCATCCAGGCCGCTCCGGAAGAATTCGGGGAGGTGGTGCGGCTCCTCAGGAAAAGGGGATTCACGGGG GCCAACGTTACGGTTCCCCACAAGCAGGCGGCCTGTTCCCTGTGCAGTGACACAGACGCCCTTTCCCGCGCTACCGGCTC CGTCAATACTCTTGTTTTCCAACAGGACGGTTCCGTCTCCGGATTCAATACGGACGGCCCGGGGTTCGCCCGCGCCATCC GGGAGGAATTTTCCGTGGATTTGCGCGATTTGAAAGTGGCCCTTCTGGGCTCCTGCGGCGGGGCCGGGCTTGCCCTGGCC TACACCTGCGCCATGCAGCGTTGCGAACGGCTGACGCTGGCCGGAAGATCGGAAGAAAAGCTTCAGGAGCTTAAAAACAG GCTGAGTTCCTTTTTCATTGACGAACACAGGCTGGAAGGGGCCTCCGACCGCCTGGCGGCCCACCAGAACAATACGCCCC GTTTCAATGCCGCCGTGGAGGAAGCGGACCTGATCGTCAACGCCACCTCCCTCGGCCTGAAGCCTACGGACCCTTCCCCC GTCCCCCCTGCACTGCTTTCCGCCCACCATCTGGTTTATGATTTACAGACGCATGACGATGCCTTCCAGATGGAAGCCCG CTTTCAGGGCGCCAGAGTTTCCAACGGCCTTTCCATGCTGGTTCACCAGGGGGCCCTTTCCTTTGAACGCTGGTTCGGCA TCAAGCCGGATATTTCCGCCATGCGCCAGGCTCTTGAACAAAAGCATGACTGA
Upstream 100 bases:
>100_bases CGCCGCGCGGGGAAAAGGAATGATAGGCGTTTGCCTTGAAATCCGGCAGCATTTCATTCATAGTCCGGCGCGTACGCCTG AAGCCGTTCCCACATTTTCC
Downstream 100 bases:
>100_bases CGGCACCCCCCATTTTAACATCCATGCTTTCCGGAACGCGCTGGTAGAATGGTTCAGGCGCGAAGGGAGGGATTACCCGT GGCGGCGGACAACGGATCCG
Product: Shikimate dehydrogenase substrate binding domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 310
Protein sequence:
>310_residues MKPYYTLADLLDEEHPFDAGETVPARLVVIGFPIAHSKSPAMQQAALDAAGIRARYIRIQAAPEEFGEVVRLLRKRGFTG ANVTVPHKQAACSLCSDTDALSRATGSVNTLVFQQDGSVSGFNTDGPGFARAIREEFSVDLRDLKVALLGSCGGAGLALA YTCAMQRCERLTLAGRSEEKLQELKNRLSSFFIDEHRLEGASDRLAAHQNNTPRFNAAVEEADLIVNATSLGLKPTDPSP VPPALLSAHHLVYDLQTHDDAFQMEARFQGARVSNGLSMLVHQGALSFERWFGIKPDISAMRQALEQKHD
Sequences:
>Translated_310_residues MKPYYTLADLLDEEHPFDAGETVPARLVVIGFPIAHSKSPAMQQAALDAAGIRARYIRIQAAPEEFGEVVRLLRKRGFTG ANVTVPHKQAACSLCSDTDALSRATGSVNTLVFQQDGSVSGFNTDGPGFARAIREEFSVDLRDLKVALLGSCGGAGLALA YTCAMQRCERLTLAGRSEEKLQELKNRLSSFFIDEHRLEGASDRLAAHQNNTPRFNAAVEEADLIVNATSLGLKPTDPSP VPPALLSAHHLVYDLQTHDDAFQMEARFQGARVSNGLSMLVHQGALSFERWFGIKPDISAMRQALEQKHD >Mature_310_residues MKPYYTLADLLDEEHPFDAGETVPARLVVIGFPIAHSKSPAMQQAALDAAGIRARYIRIQAAPEEFGEVVRLLRKRGFTG ANVTVPHKQAACSLCSDTDALSRATGSVNTLVFQQDGSVSGFNTDGPGFARAIREEFSVDLRDLKVALLGSCGGAGLALA YTCAMQRCERLTLAGRSEEKLQELKNRLSSFFIDEHRLEGASDRLAAHQNNTPRFNAAVEEADLIVNATSLGLKPTDPSP VPPALLSAHHLVYDLQTHDDAFQMEARFQGARVSNGLSMLVHQGALSFERWFGIKPDISAMRQALEQKHD
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; fourth step. [C]
COG id: COG0169
COG function: function code E; Shikimate 5-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1787983, Length=300, Percent_Identity=29, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1789675, Length=284, Percent_Identity=30.9859154929577, Blast_Score=102, Evalue=3e-23, Organism=Saccharomyces cerevisiae, GI6320332, Length=292, Percent_Identity=23.6301369863014, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR011342 - InterPro: IPR013708 - InterPro: IPR022893 - InterPro: IPR006151 [H]
Pfam domain/function: PF01488 Shikimate_DH; PF08501 Shikimate_dh_N [H]
EC number: =1.1.1.25 [H]
Molecular weight: Translated: 33772; Mature: 33772
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPYYTLADLLDEEHPFDAGETVPARLVVIGFPIAHSKSPAMQQAALDAAGIRARYIRIQ CCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEEE AAPEEFGEVVRLLRKRGFTGANVTVPHKQAACSLCSDTDALSRATGSVNTLVFQQDGSVS ECHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHCCHHHHHHCCCCCEEEEEECCCCCC GFNTDGPGFARAIREEFSVDLRDLKVALLGSCGGAGLALAYTCAMQRCERLTLAGRSEEK CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH LQELKNRLSSFFIDEHRLEGASDRLAAHQNNTPRFNAAVEEADLIVNATSLGLKPTDPSP HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHEEEEHHHCCCCCCCCCC VPPALLSAHHLVYDLQTHDDAFQMEARFQGARVSNGLSMLVHQGALSFERWFGIKPDISA CCHHHHHHHHHEEEECCCCCHHHHHHHHCCCHHHCHHHHHHHHCCHHHHHHCCCCCCHHH MRQALEQKHD HHHHHHHCCC >Mature Secondary Structure MKPYYTLADLLDEEHPFDAGETVPARLVVIGFPIAHSKSPAMQQAALDAAGIRARYIRIQ CCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEEE AAPEEFGEVVRLLRKRGFTGANVTVPHKQAACSLCSDTDALSRATGSVNTLVFQQDGSVS ECHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHCCHHHHHHCCCCCEEEEEECCCCCC GFNTDGPGFARAIREEFSVDLRDLKVALLGSCGGAGLALAYTCAMQRCERLTLAGRSEEK CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH LQELKNRLSSFFIDEHRLEGASDRLAAHQNNTPRFNAAVEEADLIVNATSLGLKPTDPSP HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHEEEEHHHCCCCCCCCCC VPPALLSAHHLVYDLQTHDDAFQMEARFQGARVSNGLSMLVHQGALSFERWFGIKPDISA CCHHHHHHHHHEEEECCCCCHHHHHHHHCCCHHHCHHHHHHHHCCHHHHHHCCCCCCHHH MRQALEQKHD HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA