Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187736425
Identifier: 187736425
GI number: 187736425
Start: 2358729
End: 2361482
Strand: Direct
Name: 187736425
Synonym: Amuc_1943
Alternate gene names: NA
Gene position: 2358729-2361482 (Clockwise)
Preceding gene: 187736420
Following gene: 187736426
Centisome position: 88.54
GC content: 59.01
Gene sequence:
>2754_bases ATGATGACTCCTCTCCCCCTTGGCATTACCCTTGCTTTGTCCCTGACCTGCGGCTCCATGCCCCTTCTGGCCCAGGGGTC GTATATGCCCGGCCCCATGCCCGCCACCGCCGGGACAAAGCAGGATCCAACGGACATGTACCTGGAGGCGTTGAGGCTGG TGACCCAAGCCGCAGGACTGGTGGAAAAACGGGATTATATAGGAGCCATCCGCCTGACACAGCAGGCGGAAGACAAGTTC GGACGCCTGGCTAAGTCTTATCCCCAATGGCGCCCCAACCTGCTGCAAACGCGCCGCCAGCTCAACAGGGAAAATCTGGA CCAGTGGCAGAAGCTGGCCCAGCAGCAGGCCGCCGCCTCTTCTTCATCCGGCCTGGAGCTGGAACGCCCGGCCTCCGTGC CGAAGCGCCCCAGGCCAAAACCCAACATAGCCCTCCCTCCCGGCTACAAGGGCGTGGAATTCCCTACCCGTCCCGGAGAA TCCCTGATCAATACCATCCCGTCCCCTTCCGTTTCTCCCGGGGCGGCTCCGGAAGTGGTGGAGAGCAATTACGAACGCAT CCGCAGACTGCTGGATAAAACCACCATGGAGAACAATGCTCTGATCCAGGCTCTCAAGCGCACCCGCCGGGAGCAGGAGG AGATTCTGGCAAAACTGGCCGTGGCATCCGCCGGAGAATCCGTTTACCGAGATGAATTGCTCAAGGTCAAAAAGCAGATG GAGGATGAAAGAAAGACCAGCAACAAGCTTATTCAGACTCTCACCAGGAGAGTGGAGGAACTGGAACAAAATGTCACCTC CCTCAGCCAGGACAAAGCCCGTTATCTGGCGCAGATCGCCGATCTTCAGCTGCAGCTCAAGGAGTACCAGGACAAGCTGG ACAAAGTGACGGATGAGAAAAACGCCCTTCAGAAAGACCGGGACCAATTGGCGGCCCTGGTGGAGCTCAACAGCCCGGAC AAAACAAAAAACCTGTTGGACCGCAACCTGACGCTGGCGGCCCAGCTCAAGGATGCCCAGGACAAAATCGCCGCTCTGGA AACAGCCAAATCCGATTCCGAAGAACAGCGGAAAGCCAACCTGAAAGCGTTGGAAGAGGCGCGTGAGGAATCCGCAGACC TGAAACAGAAACTGATTGCCATCCGGGATGAAAACATCGGCTACCGCAAACGCATCACAGAGTTGAATACCAAGCTCATC AATGCGGATGTGGAACTGTCCAAGCTGGAGGCCAATCCGGAAAAAAGCCCGCTTCTTCTGGAAGAAAACCAGCTGCTGCG CTCCACCATCGCCAAGCAGCTCCGCATACTTTCCGTGCAGGACCAGAGCCGCTCCCTGCTCATCAGCACTTATAAGCGGC TGCATCAGGAAAATCCGGACACGGCGGAAATAGCCTCCCTGATGGACAATGAAGAAGCCATCAAGCTCACTCCTGCGGAA AAACAAATTGTCAACGCCATTGCCAGGGATAACAATATCAATGTTCCCCTGACGGATCAGCAGAAGGAAAAAATCAACAA GCTGGCACAGGCCCTCTCTGCGGAACGCGGCAAGGCCGCCCAGCTTGCTCGGGATTTGGAACTGGCGCGCAGCCAGATGA AGACCAAAGCGGACAAATCCGCCAGAAACGACAAGAAACAGGCGGAAGCCCTGGCGCGGGCCCAGAAGGCCCTGGAACAG AAAAACATTCAGGTGGAGGAACTCACCCGGCAGATGGAAGAACTGAAAAGCCGTTCCGCCGAACAGGCCCGCCTGGCCGC CATCTCCGCCGGAACCATTACTCCGGACCAGGAAAAAGCGCTGAACCGGAGCATGGAAGCCACGGTACGCCGGAAGCTGG AGGCGGAAGCCCTGGGGCAAGGCGCCGCAGAAGCCTTCGCCAAAAAACGCTATGCCGCCGCAGAACAGCTGTACCGGACT TTGCTGGACTTCCAGCCGGCTCACGTTCCGGCCCTGGTCAATCTGGGGACCATTCTGCTTCAGCGCAACAAGGCGGAGGA AGCCATCAAATTTCTGAAAAAAGCCACGGAACTGGACGCCTCCTCCTCCCCCGCATGGTTCATGATGGGGGTGGCCCAAT ACCGCGCCGGGGAAGACCACCACGCCATCGCCTCCCTGACGGAAACGGTCAGGCTGGATCCGGCCAACGCTCCCGCCCTG CTTTACCTGGGCAACCTGGAAACCAGCGCCGGGAACTATGAAAAAGCGGTGGCCCACTTTGAAAACGCCCTGAAAATCCA GCCGGAATCACCGGACGCGCACTTCAACCTGGCCTGGACCTATTCCCGGCTGGGCCGCACGGCGCAGGCACGCAAAAGCT ATGATGCAGCCATCCGCTGCGGAGGCTTGCCGGATTCCGACCTGGAGCTTGCCATTACCGGAACCACCACCCTTCCCCGC AAAAAACAGGCTGCGGACCAGAATCCCGCCTCCGCCGCAAAAGAGGACGGCCCCCAGCTGGCCGCGGCAATAAGCGATCC GTCTGCCATTCCCCACGACGCCAATGAAGTGCCTGCTCATGTGGCGGAGGATCCGAATGCGCAGGAAAAGCCGTCCGCCG GTCCCAAACAGGTCGTCGTCAGCCACCGTCCGGAAACCGAACCCATCTCTCTGGCAGCCCAAATGAGGGAAACTGCCCCT GCGGCGGCATCCGCACAACCTCCGGCAGAAGCCGCAACTGCCGCAACGGAAACGCCCAAGCCGGAAAAGCAGGAACCTCC GCGCAGGAAAAGCCGTTTCCGAATCGGTTCCTGA
Upstream 100 bases:
>100_bases TGGCAAGAGTCTACCACCCGCCCCCGCGAACACAAGCACAAGACACGGTTTATTCTTGCGATTCAGGACGGTGTGCCGTA TGTAAACAAAGCTTCTCCCC
Downstream 100 bases:
>100_bases TGGAATTCTTCCCTTTCCCACTAAATAAAGCCATGTATCACGTTTCCATTTTAGGACTGGGCCTCATTGGCTCACGGATT GCACGCCATATGGCCGGAAT
Product: Tetratricopeptide TPR_2 repeat protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 917; Mature: 917
Protein sequence:
>917_residues MMTPLPLGITLALSLTCGSMPLLAQGSYMPGPMPATAGTKQDPTDMYLEALRLVTQAAGLVEKRDYIGAIRLTQQAEDKF GRLAKSYPQWRPNLLQTRRQLNRENLDQWQKLAQQQAAASSSSGLELERPASVPKRPRPKPNIALPPGYKGVEFPTRPGE SLINTIPSPSVSPGAAPEVVESNYERIRRLLDKTTMENNALIQALKRTRREQEEILAKLAVASAGESVYRDELLKVKKQM EDERKTSNKLIQTLTRRVEELEQNVTSLSQDKARYLAQIADLQLQLKEYQDKLDKVTDEKNALQKDRDQLAALVELNSPD KTKNLLDRNLTLAAQLKDAQDKIAALETAKSDSEEQRKANLKALEEAREESADLKQKLIAIRDENIGYRKRITELNTKLI NADVELSKLEANPEKSPLLLEENQLLRSTIAKQLRILSVQDQSRSLLISTYKRLHQENPDTAEIASLMDNEEAIKLTPAE KQIVNAIARDNNINVPLTDQQKEKINKLAQALSAERGKAAQLARDLELARSQMKTKADKSARNDKKQAEALARAQKALEQ KNIQVEELTRQMEELKSRSAEQARLAAISAGTITPDQEKALNRSMEATVRRKLEAEALGQGAAEAFAKKRYAAAEQLYRT LLDFQPAHVPALVNLGTILLQRNKAEEAIKFLKKATELDASSSPAWFMMGVAQYRAGEDHHAIASLTETVRLDPANAPAL LYLGNLETSAGNYEKAVAHFENALKIQPESPDAHFNLAWTYSRLGRTAQARKSYDAAIRCGGLPDSDLELAITGTTTLPR KKQAADQNPASAAKEDGPQLAAAISDPSAIPHDANEVPAHVAEDPNAQEKPSAGPKQVVVSHRPETEPISLAAQMRETAP AAASAQPPAEAATAATETPKPEKQEPPRRKSRFRIGS
Sequences:
>Translated_917_residues MMTPLPLGITLALSLTCGSMPLLAQGSYMPGPMPATAGTKQDPTDMYLEALRLVTQAAGLVEKRDYIGAIRLTQQAEDKF GRLAKSYPQWRPNLLQTRRQLNRENLDQWQKLAQQQAAASSSSGLELERPASVPKRPRPKPNIALPPGYKGVEFPTRPGE SLINTIPSPSVSPGAAPEVVESNYERIRRLLDKTTMENNALIQALKRTRREQEEILAKLAVASAGESVYRDELLKVKKQM EDERKTSNKLIQTLTRRVEELEQNVTSLSQDKARYLAQIADLQLQLKEYQDKLDKVTDEKNALQKDRDQLAALVELNSPD KTKNLLDRNLTLAAQLKDAQDKIAALETAKSDSEEQRKANLKALEEAREESADLKQKLIAIRDENIGYRKRITELNTKLI NADVELSKLEANPEKSPLLLEENQLLRSTIAKQLRILSVQDQSRSLLISTYKRLHQENPDTAEIASLMDNEEAIKLTPAE KQIVNAIARDNNINVPLTDQQKEKINKLAQALSAERGKAAQLARDLELARSQMKTKADKSARNDKKQAEALARAQKALEQ KNIQVEELTRQMEELKSRSAEQARLAAISAGTITPDQEKALNRSMEATVRRKLEAEALGQGAAEAFAKKRYAAAEQLYRT LLDFQPAHVPALVNLGTILLQRNKAEEAIKFLKKATELDASSSPAWFMMGVAQYRAGEDHHAIASLTETVRLDPANAPAL LYLGNLETSAGNYEKAVAHFENALKIQPESPDAHFNLAWTYSRLGRTAQARKSYDAAIRCGGLPDSDLELAITGTTTLPR KKQAADQNPASAAKEDGPQLAAAISDPSAIPHDANEVPAHVAEDPNAQEKPSAGPKQVVVSHRPETEPISLAAQMRETAP AAASAQPPAEAATAATETPKPEKQEPPRRKSRFRIGS >Mature_917_residues MMTPLPLGITLALSLTCGSMPLLAQGSYMPGPMPATAGTKQDPTDMYLEALRLVTQAAGLVEKRDYIGAIRLTQQAEDKF GRLAKSYPQWRPNLLQTRRQLNRENLDQWQKLAQQQAAASSSSGLELERPASVPKRPRPKPNIALPPGYKGVEFPTRPGE SLINTIPSPSVSPGAAPEVVESNYERIRRLLDKTTMENNALIQALKRTRREQEEILAKLAVASAGESVYRDELLKVKKQM EDERKTSNKLIQTLTRRVEELEQNVTSLSQDKARYLAQIADLQLQLKEYQDKLDKVTDEKNALQKDRDQLAALVELNSPD KTKNLLDRNLTLAAQLKDAQDKIAALETAKSDSEEQRKANLKALEEAREESADLKQKLIAIRDENIGYRKRITELNTKLI NADVELSKLEANPEKSPLLLEENQLLRSTIAKQLRILSVQDQSRSLLISTYKRLHQENPDTAEIASLMDNEEAIKLTPAE KQIVNAIARDNNINVPLTDQQKEKINKLAQALSAERGKAAQLARDLELARSQMKTKADKSARNDKKQAEALARAQKALEQ KNIQVEELTRQMEELKSRSAEQARLAAISAGTITPDQEKALNRSMEATVRRKLEAEALGQGAAEAFAKKRYAAAEQLYRT LLDFQPAHVPALVNLGTILLQRNKAEEAIKFLKKATELDASSSPAWFMMGVAQYRAGEDHHAIASLTETVRLDPANAPAL LYLGNLETSAGNYEKAVAHFENALKIQPESPDAHFNLAWTYSRLGRTAQARKSYDAAIRCGGLPDSDLELAITGTTTLPR KKQAADQNPASAAKEDGPQLAAAISDPSAIPHDANEVPAHVAEDPNAQEKPSAGPKQVVVSHRPETEPISLAAQMRETAP AAASAQPPAEAATAATETPKPEKQEPPRRKSRFRIGS
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 7 TPR repeats [H]
Homologues:
Organism=Caenorhabditis elegans, GI115532690, Length=159, Percent_Identity=30.8176100628931, Blast_Score=66, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00515 TPR_1 [H]
EC number: NA
Molecular weight: Translated: 101185; Mature: 101185
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTPLPLGITLALSLTCGSMPLLAQGSYMPGPMPATAGTKQDPTDMYLEALRLVTQAAGL CCCCCCCCHHHEEEHHCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH VEKRDYIGAIRLTQQAEDKFGRLAKSYPQWRPNLLQTRRQLNRENLDQWQKLAQQQAAAS HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC SSSGLELERPASVPKRPRPKPNIALPPGYKGVEFPTRPGESLINTIPSPSVSPGAAPEVV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHH ESNYERIRRLLDKTTMENNALIQALKRTRREQEEILAKLAVASAGESVYRDELLKVKKQM HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH EDERKTSNKLIQTLTRRVEELEQNVTSLSQDKARYLAQIADLQLQLKEYQDKLDKVTDEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH NALQKDRDQLAALVELNSPDKTKNLLDRNLTLAAQLKDAQDKIAALETAKSDSEEQRKAN HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LKALEEAREESADLKQKLIAIRDENIGYRKRITELNTKLINADVELSKLEANPEKSPLLL HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEE EENQLLRSTIAKQLRILSVQDQSRSLLISTYKRLHQENPDTAEIASLMDNEEAIKLTPAE CHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEECCHH KQIVNAIARDNNINVPLTDQQKEKINKLAQALSAERGKAAQLARDLELARSQMKTKADKS HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH ARNDKKQAEALARAQKALEQKNIQVEELTRQMEELKSRSAEQARLAAISAGTITPDQEKA HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHH LNRSMEATVRRKLEAEALGQGAAEAFAKKRYAAAEQLYRTLLDFQPAHVPALVNLGTILL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH QRNKAEEAIKFLKKATELDASSSPAWFMMGVAQYRAGEDHHAIASLTETVRLDPANAPAL HCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCEE LYLGNLETSAGNYEKAVAHFENALKIQPESPDAHFNLAWTYSRLGRTAQARKSYDAAIRC EEECCCCCCCCCHHHHHHHHHHHEEECCCCCCCCEEEEEEHHHHCCHHHHHHHHHHHEEE GGLPDSDLELAITGTTTLPRKKQAADQNPASAAKEDGPQLAAAISDPSAIPHDANEVPAH CCCCCCCCEEEEECCCCCCCHHHHCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCH VAEDPNAQEKPSAGPKQVVVSHRPETEPISLAAQMRETAPAAASAQPPAEAATAATETPK HCCCCCCCCCCCCCCHHEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCC PEKQEPPRRKSRFRIGS CCCCCCCCHHCCCCCCC >Mature Secondary Structure MMTPLPLGITLALSLTCGSMPLLAQGSYMPGPMPATAGTKQDPTDMYLEALRLVTQAAGL CCCCCCCCHHHEEEHHCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH VEKRDYIGAIRLTQQAEDKFGRLAKSYPQWRPNLLQTRRQLNRENLDQWQKLAQQQAAAS HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC SSSGLELERPASVPKRPRPKPNIALPPGYKGVEFPTRPGESLINTIPSPSVSPGAAPEVV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHH ESNYERIRRLLDKTTMENNALIQALKRTRREQEEILAKLAVASAGESVYRDELLKVKKQM HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH EDERKTSNKLIQTLTRRVEELEQNVTSLSQDKARYLAQIADLQLQLKEYQDKLDKVTDEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH NALQKDRDQLAALVELNSPDKTKNLLDRNLTLAAQLKDAQDKIAALETAKSDSEEQRKAN HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LKALEEAREESADLKQKLIAIRDENIGYRKRITELNTKLINADVELSKLEANPEKSPLLL HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEE EENQLLRSTIAKQLRILSVQDQSRSLLISTYKRLHQENPDTAEIASLMDNEEAIKLTPAE CHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEECCHH KQIVNAIARDNNINVPLTDQQKEKINKLAQALSAERGKAAQLARDLELARSQMKTKADKS HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH ARNDKKQAEALARAQKALEQKNIQVEELTRQMEELKSRSAEQARLAAISAGTITPDQEKA HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHH LNRSMEATVRRKLEAEALGQGAAEAFAKKRYAAAEQLYRTLLDFQPAHVPALVNLGTILL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH QRNKAEEAIKFLKKATELDASSSPAWFMMGVAQYRAGEDHHAIASLTETVRLDPANAPAL HCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCEE LYLGNLETSAGNYEKAVAHFENALKIQPESPDAHFNLAWTYSRLGRTAQARKSYDAAIRC EEECCCCCCCCCHHHHHHHHHHHEEECCCCCCCCEEEEEEHHHHCCHHHHHHHHHHHEEE GGLPDSDLELAITGTTTLPRKKQAADQNPASAAKEDGPQLAAAISDPSAIPHDANEVPAH CCCCCCCCEEEEECCCCCCCHHHHCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCH VAEDPNAQEKPSAGPKQVVVSHRPETEPISLAAQMRETAPAAASAQPPAEAATAATETPK HCCCCCCCCCCCCCCHHEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCC PEKQEPPRRKSRFRIGS CCCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]