Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is 187736425

Identifier: 187736425

GI number: 187736425

Start: 2358729

End: 2361482

Strand: Direct

Name: 187736425

Synonym: Amuc_1943

Alternate gene names: NA

Gene position: 2358729-2361482 (Clockwise)

Preceding gene: 187736420

Following gene: 187736426

Centisome position: 88.54

GC content: 59.01

Gene sequence:

>2754_bases
ATGATGACTCCTCTCCCCCTTGGCATTACCCTTGCTTTGTCCCTGACCTGCGGCTCCATGCCCCTTCTGGCCCAGGGGTC
GTATATGCCCGGCCCCATGCCCGCCACCGCCGGGACAAAGCAGGATCCAACGGACATGTACCTGGAGGCGTTGAGGCTGG
TGACCCAAGCCGCAGGACTGGTGGAAAAACGGGATTATATAGGAGCCATCCGCCTGACACAGCAGGCGGAAGACAAGTTC
GGACGCCTGGCTAAGTCTTATCCCCAATGGCGCCCCAACCTGCTGCAAACGCGCCGCCAGCTCAACAGGGAAAATCTGGA
CCAGTGGCAGAAGCTGGCCCAGCAGCAGGCCGCCGCCTCTTCTTCATCCGGCCTGGAGCTGGAACGCCCGGCCTCCGTGC
CGAAGCGCCCCAGGCCAAAACCCAACATAGCCCTCCCTCCCGGCTACAAGGGCGTGGAATTCCCTACCCGTCCCGGAGAA
TCCCTGATCAATACCATCCCGTCCCCTTCCGTTTCTCCCGGGGCGGCTCCGGAAGTGGTGGAGAGCAATTACGAACGCAT
CCGCAGACTGCTGGATAAAACCACCATGGAGAACAATGCTCTGATCCAGGCTCTCAAGCGCACCCGCCGGGAGCAGGAGG
AGATTCTGGCAAAACTGGCCGTGGCATCCGCCGGAGAATCCGTTTACCGAGATGAATTGCTCAAGGTCAAAAAGCAGATG
GAGGATGAAAGAAAGACCAGCAACAAGCTTATTCAGACTCTCACCAGGAGAGTGGAGGAACTGGAACAAAATGTCACCTC
CCTCAGCCAGGACAAAGCCCGTTATCTGGCGCAGATCGCCGATCTTCAGCTGCAGCTCAAGGAGTACCAGGACAAGCTGG
ACAAAGTGACGGATGAGAAAAACGCCCTTCAGAAAGACCGGGACCAATTGGCGGCCCTGGTGGAGCTCAACAGCCCGGAC
AAAACAAAAAACCTGTTGGACCGCAACCTGACGCTGGCGGCCCAGCTCAAGGATGCCCAGGACAAAATCGCCGCTCTGGA
AACAGCCAAATCCGATTCCGAAGAACAGCGGAAAGCCAACCTGAAAGCGTTGGAAGAGGCGCGTGAGGAATCCGCAGACC
TGAAACAGAAACTGATTGCCATCCGGGATGAAAACATCGGCTACCGCAAACGCATCACAGAGTTGAATACCAAGCTCATC
AATGCGGATGTGGAACTGTCCAAGCTGGAGGCCAATCCGGAAAAAAGCCCGCTTCTTCTGGAAGAAAACCAGCTGCTGCG
CTCCACCATCGCCAAGCAGCTCCGCATACTTTCCGTGCAGGACCAGAGCCGCTCCCTGCTCATCAGCACTTATAAGCGGC
TGCATCAGGAAAATCCGGACACGGCGGAAATAGCCTCCCTGATGGACAATGAAGAAGCCATCAAGCTCACTCCTGCGGAA
AAACAAATTGTCAACGCCATTGCCAGGGATAACAATATCAATGTTCCCCTGACGGATCAGCAGAAGGAAAAAATCAACAA
GCTGGCACAGGCCCTCTCTGCGGAACGCGGCAAGGCCGCCCAGCTTGCTCGGGATTTGGAACTGGCGCGCAGCCAGATGA
AGACCAAAGCGGACAAATCCGCCAGAAACGACAAGAAACAGGCGGAAGCCCTGGCGCGGGCCCAGAAGGCCCTGGAACAG
AAAAACATTCAGGTGGAGGAACTCACCCGGCAGATGGAAGAACTGAAAAGCCGTTCCGCCGAACAGGCCCGCCTGGCCGC
CATCTCCGCCGGAACCATTACTCCGGACCAGGAAAAAGCGCTGAACCGGAGCATGGAAGCCACGGTACGCCGGAAGCTGG
AGGCGGAAGCCCTGGGGCAAGGCGCCGCAGAAGCCTTCGCCAAAAAACGCTATGCCGCCGCAGAACAGCTGTACCGGACT
TTGCTGGACTTCCAGCCGGCTCACGTTCCGGCCCTGGTCAATCTGGGGACCATTCTGCTTCAGCGCAACAAGGCGGAGGA
AGCCATCAAATTTCTGAAAAAAGCCACGGAACTGGACGCCTCCTCCTCCCCCGCATGGTTCATGATGGGGGTGGCCCAAT
ACCGCGCCGGGGAAGACCACCACGCCATCGCCTCCCTGACGGAAACGGTCAGGCTGGATCCGGCCAACGCTCCCGCCCTG
CTTTACCTGGGCAACCTGGAAACCAGCGCCGGGAACTATGAAAAAGCGGTGGCCCACTTTGAAAACGCCCTGAAAATCCA
GCCGGAATCACCGGACGCGCACTTCAACCTGGCCTGGACCTATTCCCGGCTGGGCCGCACGGCGCAGGCACGCAAAAGCT
ATGATGCAGCCATCCGCTGCGGAGGCTTGCCGGATTCCGACCTGGAGCTTGCCATTACCGGAACCACCACCCTTCCCCGC
AAAAAACAGGCTGCGGACCAGAATCCCGCCTCCGCCGCAAAAGAGGACGGCCCCCAGCTGGCCGCGGCAATAAGCGATCC
GTCTGCCATTCCCCACGACGCCAATGAAGTGCCTGCTCATGTGGCGGAGGATCCGAATGCGCAGGAAAAGCCGTCCGCCG
GTCCCAAACAGGTCGTCGTCAGCCACCGTCCGGAAACCGAACCCATCTCTCTGGCAGCCCAAATGAGGGAAACTGCCCCT
GCGGCGGCATCCGCACAACCTCCGGCAGAAGCCGCAACTGCCGCAACGGAAACGCCCAAGCCGGAAAAGCAGGAACCTCC
GCGCAGGAAAAGCCGTTTCCGAATCGGTTCCTGA

Upstream 100 bases:

>100_bases
TGGCAAGAGTCTACCACCCGCCCCCGCGAACACAAGCACAAGACACGGTTTATTCTTGCGATTCAGGACGGTGTGCCGTA
TGTAAACAAAGCTTCTCCCC

Downstream 100 bases:

>100_bases
TGGAATTCTTCCCTTTCCCACTAAATAAAGCCATGTATCACGTTTCCATTTTAGGACTGGGCCTCATTGGCTCACGGATT
GCACGCCATATGGCCGGAAT

Product: Tetratricopeptide TPR_2 repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 917; Mature: 917

Protein sequence:

>917_residues
MMTPLPLGITLALSLTCGSMPLLAQGSYMPGPMPATAGTKQDPTDMYLEALRLVTQAAGLVEKRDYIGAIRLTQQAEDKF
GRLAKSYPQWRPNLLQTRRQLNRENLDQWQKLAQQQAAASSSSGLELERPASVPKRPRPKPNIALPPGYKGVEFPTRPGE
SLINTIPSPSVSPGAAPEVVESNYERIRRLLDKTTMENNALIQALKRTRREQEEILAKLAVASAGESVYRDELLKVKKQM
EDERKTSNKLIQTLTRRVEELEQNVTSLSQDKARYLAQIADLQLQLKEYQDKLDKVTDEKNALQKDRDQLAALVELNSPD
KTKNLLDRNLTLAAQLKDAQDKIAALETAKSDSEEQRKANLKALEEAREESADLKQKLIAIRDENIGYRKRITELNTKLI
NADVELSKLEANPEKSPLLLEENQLLRSTIAKQLRILSVQDQSRSLLISTYKRLHQENPDTAEIASLMDNEEAIKLTPAE
KQIVNAIARDNNINVPLTDQQKEKINKLAQALSAERGKAAQLARDLELARSQMKTKADKSARNDKKQAEALARAQKALEQ
KNIQVEELTRQMEELKSRSAEQARLAAISAGTITPDQEKALNRSMEATVRRKLEAEALGQGAAEAFAKKRYAAAEQLYRT
LLDFQPAHVPALVNLGTILLQRNKAEEAIKFLKKATELDASSSPAWFMMGVAQYRAGEDHHAIASLTETVRLDPANAPAL
LYLGNLETSAGNYEKAVAHFENALKIQPESPDAHFNLAWTYSRLGRTAQARKSYDAAIRCGGLPDSDLELAITGTTTLPR
KKQAADQNPASAAKEDGPQLAAAISDPSAIPHDANEVPAHVAEDPNAQEKPSAGPKQVVVSHRPETEPISLAAQMRETAP
AAASAQPPAEAATAATETPKPEKQEPPRRKSRFRIGS

Sequences:

>Translated_917_residues
MMTPLPLGITLALSLTCGSMPLLAQGSYMPGPMPATAGTKQDPTDMYLEALRLVTQAAGLVEKRDYIGAIRLTQQAEDKF
GRLAKSYPQWRPNLLQTRRQLNRENLDQWQKLAQQQAAASSSSGLELERPASVPKRPRPKPNIALPPGYKGVEFPTRPGE
SLINTIPSPSVSPGAAPEVVESNYERIRRLLDKTTMENNALIQALKRTRREQEEILAKLAVASAGESVYRDELLKVKKQM
EDERKTSNKLIQTLTRRVEELEQNVTSLSQDKARYLAQIADLQLQLKEYQDKLDKVTDEKNALQKDRDQLAALVELNSPD
KTKNLLDRNLTLAAQLKDAQDKIAALETAKSDSEEQRKANLKALEEAREESADLKQKLIAIRDENIGYRKRITELNTKLI
NADVELSKLEANPEKSPLLLEENQLLRSTIAKQLRILSVQDQSRSLLISTYKRLHQENPDTAEIASLMDNEEAIKLTPAE
KQIVNAIARDNNINVPLTDQQKEKINKLAQALSAERGKAAQLARDLELARSQMKTKADKSARNDKKQAEALARAQKALEQ
KNIQVEELTRQMEELKSRSAEQARLAAISAGTITPDQEKALNRSMEATVRRKLEAEALGQGAAEAFAKKRYAAAEQLYRT
LLDFQPAHVPALVNLGTILLQRNKAEEAIKFLKKATELDASSSPAWFMMGVAQYRAGEDHHAIASLTETVRLDPANAPAL
LYLGNLETSAGNYEKAVAHFENALKIQPESPDAHFNLAWTYSRLGRTAQARKSYDAAIRCGGLPDSDLELAITGTTTLPR
KKQAADQNPASAAKEDGPQLAAAISDPSAIPHDANEVPAHVAEDPNAQEKPSAGPKQVVVSHRPETEPISLAAQMRETAP
AAASAQPPAEAATAATETPKPEKQEPPRRKSRFRIGS
>Mature_917_residues
MMTPLPLGITLALSLTCGSMPLLAQGSYMPGPMPATAGTKQDPTDMYLEALRLVTQAAGLVEKRDYIGAIRLTQQAEDKF
GRLAKSYPQWRPNLLQTRRQLNRENLDQWQKLAQQQAAASSSSGLELERPASVPKRPRPKPNIALPPGYKGVEFPTRPGE
SLINTIPSPSVSPGAAPEVVESNYERIRRLLDKTTMENNALIQALKRTRREQEEILAKLAVASAGESVYRDELLKVKKQM
EDERKTSNKLIQTLTRRVEELEQNVTSLSQDKARYLAQIADLQLQLKEYQDKLDKVTDEKNALQKDRDQLAALVELNSPD
KTKNLLDRNLTLAAQLKDAQDKIAALETAKSDSEEQRKANLKALEEAREESADLKQKLIAIRDENIGYRKRITELNTKLI
NADVELSKLEANPEKSPLLLEENQLLRSTIAKQLRILSVQDQSRSLLISTYKRLHQENPDTAEIASLMDNEEAIKLTPAE
KQIVNAIARDNNINVPLTDQQKEKINKLAQALSAERGKAAQLARDLELARSQMKTKADKSARNDKKQAEALARAQKALEQ
KNIQVEELTRQMEELKSRSAEQARLAAISAGTITPDQEKALNRSMEATVRRKLEAEALGQGAAEAFAKKRYAAAEQLYRT
LLDFQPAHVPALVNLGTILLQRNKAEEAIKFLKKATELDASSSPAWFMMGVAQYRAGEDHHAIASLTETVRLDPANAPAL
LYLGNLETSAGNYEKAVAHFENALKIQPESPDAHFNLAWTYSRLGRTAQARKSYDAAIRCGGLPDSDLELAITGTTTLPR
KKQAADQNPASAAKEDGPQLAAAISDPSAIPHDANEVPAHVAEDPNAQEKPSAGPKQVVVSHRPETEPISLAAQMRETAP
AAASAQPPAEAATAATETPKPEKQEPPRRKSRFRIGS

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 7 TPR repeats [H]

Homologues:

Organism=Caenorhabditis elegans, GI115532690, Length=159, Percent_Identity=30.8176100628931, Blast_Score=66, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 101185; Mature: 101185

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTPLPLGITLALSLTCGSMPLLAQGSYMPGPMPATAGTKQDPTDMYLEALRLVTQAAGL
CCCCCCCCHHHEEEHHCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VEKRDYIGAIRLTQQAEDKFGRLAKSYPQWRPNLLQTRRQLNRENLDQWQKLAQQQAAAS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
SSSGLELERPASVPKRPRPKPNIALPPGYKGVEFPTRPGESLINTIPSPSVSPGAAPEVV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHH
ESNYERIRRLLDKTTMENNALIQALKRTRREQEEILAKLAVASAGESVYRDELLKVKKQM
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EDERKTSNKLIQTLTRRVEELEQNVTSLSQDKARYLAQIADLQLQLKEYQDKLDKVTDEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
NALQKDRDQLAALVELNSPDKTKNLLDRNLTLAAQLKDAQDKIAALETAKSDSEEQRKAN
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LKALEEAREESADLKQKLIAIRDENIGYRKRITELNTKLINADVELSKLEANPEKSPLLL
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEE
EENQLLRSTIAKQLRILSVQDQSRSLLISTYKRLHQENPDTAEIASLMDNEEAIKLTPAE
CHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEECCHH
KQIVNAIARDNNINVPLTDQQKEKINKLAQALSAERGKAAQLARDLELARSQMKTKADKS
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ARNDKKQAEALARAQKALEQKNIQVEELTRQMEELKSRSAEQARLAAISAGTITPDQEKA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHH
LNRSMEATVRRKLEAEALGQGAAEAFAKKRYAAAEQLYRTLLDFQPAHVPALVNLGTILL
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
QRNKAEEAIKFLKKATELDASSSPAWFMMGVAQYRAGEDHHAIASLTETVRLDPANAPAL
HCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCEE
LYLGNLETSAGNYEKAVAHFENALKIQPESPDAHFNLAWTYSRLGRTAQARKSYDAAIRC
EEECCCCCCCCCHHHHHHHHHHHEEECCCCCCCCEEEEEEHHHHCCHHHHHHHHHHHEEE
GGLPDSDLELAITGTTTLPRKKQAADQNPASAAKEDGPQLAAAISDPSAIPHDANEVPAH
CCCCCCCCEEEEECCCCCCCHHHHCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCH
VAEDPNAQEKPSAGPKQVVVSHRPETEPISLAAQMRETAPAAASAQPPAEAATAATETPK
HCCCCCCCCCCCCCCHHEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCC
PEKQEPPRRKSRFRIGS
CCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MMTPLPLGITLALSLTCGSMPLLAQGSYMPGPMPATAGTKQDPTDMYLEALRLVTQAAGL
CCCCCCCCHHHEEEHHCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VEKRDYIGAIRLTQQAEDKFGRLAKSYPQWRPNLLQTRRQLNRENLDQWQKLAQQQAAAS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
SSSGLELERPASVPKRPRPKPNIALPPGYKGVEFPTRPGESLINTIPSPSVSPGAAPEVV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHH
ESNYERIRRLLDKTTMENNALIQALKRTRREQEEILAKLAVASAGESVYRDELLKVKKQM
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EDERKTSNKLIQTLTRRVEELEQNVTSLSQDKARYLAQIADLQLQLKEYQDKLDKVTDEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
NALQKDRDQLAALVELNSPDKTKNLLDRNLTLAAQLKDAQDKIAALETAKSDSEEQRKAN
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LKALEEAREESADLKQKLIAIRDENIGYRKRITELNTKLINADVELSKLEANPEKSPLLL
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEE
EENQLLRSTIAKQLRILSVQDQSRSLLISTYKRLHQENPDTAEIASLMDNEEAIKLTPAE
CHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEECCHH
KQIVNAIARDNNINVPLTDQQKEKINKLAQALSAERGKAAQLARDLELARSQMKTKADKS
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ARNDKKQAEALARAQKALEQKNIQVEELTRQMEELKSRSAEQARLAAISAGTITPDQEKA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHH
LNRSMEATVRRKLEAEALGQGAAEAFAKKRYAAAEQLYRTLLDFQPAHVPALVNLGTILL
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
QRNKAEEAIKFLKKATELDASSSPAWFMMGVAQYRAGEDHHAIASLTETVRLDPANAPAL
HCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCEE
LYLGNLETSAGNYEKAVAHFENALKIQPESPDAHFNLAWTYSRLGRTAQARKSYDAAIRC
EEECCCCCCCCCHHHHHHHHHHHEEECCCCCCCCEEEEEEHHHHCCHHHHHHHHHHHEEE
GGLPDSDLELAITGTTTLPRKKQAADQNPASAAKEDGPQLAAAISDPSAIPHDANEVPAH
CCCCCCCCEEEEECCCCCCCHHHHCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCH
VAEDPNAQEKPSAGPKQVVVSHRPETEPISLAAQMRETAPAAASAQPPAEAATAATETPK
HCCCCCCCCCCCCCCHHEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCC
PEKQEPPRRKSRFRIGS
CCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]