Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is tatC [H]
Identifier: 187736372
GI number: 187736372
Start: 2295502
End: 2296548
Strand: Direct
Name: tatC [H]
Synonym: Amuc_1889
Alternate gene names: 187736372
Gene position: 2295502-2296548 (Clockwise)
Preceding gene: 187736367
Following gene: 187736373
Centisome position: 86.16
GC content: 56.26
Gene sequence:
>1047_bases ATGCTGCTGAGGATGGCTCTGTGCCTGACCGTCAGCACAATTCTGTGCGCCGGGTTTGCGTCCAATCTGATGGACATCCT GAGGCGTCCCGTCAACCAGGTGTGGGATATGTTTGAAGAATCCCATCTTCCGGCAGGGATTGGTCTGGATGCCTGGAGTA AGGCCAAGGAAATGGCAACGGCCATGACGAGCCTGGGAGCTTCCCAGCGGGCATTGTTTCTCCGCCAGGTTTCCCCGTCC CAGGCAGATTTGACGGAGGCTGCCCTGGTTCTTCGCGGCGCGCAGCCGCTGCCGGAGGACAGGAAGCAGGTTTTCATCAG GGAAGGCAGCCCCTCCACGGCCGTGAGGGATCTGGCGGAAGCCCTGTATTCCAAAGGAGCCGTGCTGGCAGACGGAACGG GGCGGGGGGCCCTCAAGATGATGAGCGCGTTCCAGCCCGGGGAGGCGTTTATGCTGACCATCAAGCTTTCCCTGTATGCC GGAGTGGTCATTTCCTTCCCGCTTCTGTTGTACTTCCTGCTGCAATTCATCATTCCGGGGCTGCTGGAACATGAACGCAA GCTGCTGTACAAGTGCATGGCTGTCGGCTTCGGTCTCTTCCTGGCCGGGACGCTGTTTTGTTACTTCATCGTCCTCCCGC GGGTATTGACGTTTTTTTACACCTATTCCCTGGAATTCGGCATCTCCAATGAATGGCGCATCGGCTATTACCTGTCCTTC GCCACGCAGATGATTTTAATGTTCGGACTGGCTTTTGAATTGCCTGTGGTAGTGATGCCCTTCGTCAAGCTGGGGGTGCT GACCTATGACATGATGAAGTCCACGAGACGCTATGCCATTGTGGCTATCGCCGTCCTGGCCGCGGTTATCACCCCTACGC CGGATGTAGCTACCATGATGCTGATGGCCGTTCCCATGTATGCGCTGTATGAAATATGCATCATTCTGGCCTGGATGCAT GAACGCAAGGAGGCCGCGCGCACCCGGGAAGAAATCGCCCGGTTTGAAGAAGATTTCAACAACAACAATTCTCCCTACAA CCAGTAA
Upstream 100 bases:
>100_bases GTTCTTTTTAAAACACATATTCCGTCTGCGGGAGAAGTGGCAGATTAAAAGGGAAGATGAGGAAAAGCCCTTTCTGGAGC ATCTGGACGACCTGCGGACC
Downstream 100 bases:
>100_bases ATACATCCAACCCACGCCAATATCATGAACATTCTGGAAATTATTATCCTGGGCATTGTGGAAGGCCTGACCGAATATTT GCCGGTCAGCTCCACGGGCC
Product: Sec-independent protein translocase, TatC subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MLLRMALCLTVSTILCAGFASNLMDILRRPVNQVWDMFEESHLPAGIGLDAWSKAKEMATAMTSLGASQRALFLRQVSPS QADLTEAALVLRGAQPLPEDRKQVFIREGSPSTAVRDLAEALYSKGAVLADGTGRGALKMMSAFQPGEAFMLTIKLSLYA GVVISFPLLLYFLLQFIIPGLLEHERKLLYKCMAVGFGLFLAGTLFCYFIVLPRVLTFFYTYSLEFGISNEWRIGYYLSF ATQMILMFGLAFELPVVVMPFVKLGVLTYDMMKSTRRYAIVAIAVLAAVITPTPDVATMMLMAVPMYALYEICIILAWMH ERKEAARTREEIARFEEDFNNNNSPYNQ
Sequences:
>Translated_348_residues MLLRMALCLTVSTILCAGFASNLMDILRRPVNQVWDMFEESHLPAGIGLDAWSKAKEMATAMTSLGASQRALFLRQVSPS QADLTEAALVLRGAQPLPEDRKQVFIREGSPSTAVRDLAEALYSKGAVLADGTGRGALKMMSAFQPGEAFMLTIKLSLYA GVVISFPLLLYFLLQFIIPGLLEHERKLLYKCMAVGFGLFLAGTLFCYFIVLPRVLTFFYTYSLEFGISNEWRIGYYLSF ATQMILMFGLAFELPVVVMPFVKLGVLTYDMMKSTRRYAIVAIAVLAAVITPTPDVATMMLMAVPMYALYEICIILAWMH ERKEAARTREEIARFEEDFNNNNSPYNQ >Mature_348_residues MLLRMALCLTVSTILCAGFASNLMDILRRPVNQVWDMFEESHLPAGIGLDAWSKAKEMATAMTSLGASQRALFLRQVSPS QADLTEAALVLRGAQPLPEDRKQVFIREGSPSTAVRDLAEALYSKGAVLADGTGRGALKMMSAFQPGEAFMLTIKLSLYA GVVISFPLLLYFLLQFIIPGLLEHERKLLYKCMAVGFGLFLAGTLFCYFIVLPRVLTFFYTYSLEFGISNEWRIGYYLSF ATQMILMFGLAFELPVVVMPFVKLGVLTYDMMKSTRRYAIVAIAVLAAVITPTPDVATMMLMAVPMYALYEICIILAWMH ERKEAARTREEIARFEEDFNNNNSPYNQ
Specific function: Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif S/T-R-R-X-F-L-K. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports protei
COG id: COG0805
COG function: function code U; Sec-independent protein secretion pathway component TatC
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tatC family [H]
Homologues:
Organism=Escherichia coli, GI2367313, Length=198, Percent_Identity=31.8181818181818, Blast_Score=103, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002033 - InterPro: IPR019820 - InterPro: IPR019822 [H]
Pfam domain/function: PF00902 TatC [H]
EC number: NA
Molecular weight: Translated: 38945; Mature: 38945
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 5.7 %Met (Mature Protein) 7.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLRMALCLTVSTILCAGFASNLMDILRRPVNQVWDMFEESHLPAGIGLDAWSKAKEMAT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH AMTSLGASQRALFLRQVSPSQADLTEAALVLRGAQPLPEDRKQVFIREGSPSTAVRDLAE HHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCCHHHHHHHH ALYSKGAVLADGTGRGALKMMSAFQPGEAFMLTIKLSLYAGVVISFPLLLYFLLQFIIPG HHHHCCCEEECCCCCHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH LLEHERKLLYKCMAVGFGLFLAGTLFCYFIVLPRVLTFFYTYSLEFGISNEWRIGYYLSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHH ATQMILMFGLAFELPVVVMPFVKLGVLTYDMMKSTRRYAIVAIAVLAAVITPTPDVATMM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LMAVPMYALYEICIILAWMHERKEAARTREEIARFEEDFNNNNSPYNQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MLLRMALCLTVSTILCAGFASNLMDILRRPVNQVWDMFEESHLPAGIGLDAWSKAKEMAT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH AMTSLGASQRALFLRQVSPSQADLTEAALVLRGAQPLPEDRKQVFIREGSPSTAVRDLAE HHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCCHHHHHHHH ALYSKGAVLADGTGRGALKMMSAFQPGEAFMLTIKLSLYAGVVISFPLLLYFLLQFIIPG HHHHCCCEEECCCCCHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH LLEHERKLLYKCMAVGFGLFLAGTLFCYFIVLPRVLTFFYTYSLEFGISNEWRIGYYLSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHH ATQMILMFGLAFELPVVVMPFVKLGVLTYDMMKSTRRYAIVAIAVLAAVITPTPDVATMM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LMAVPMYALYEICIILAWMHERKEAARTREEIARFEEDFNNNNSPYNQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9252185 [H]