Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is gltX
Identifier: 187736371
GI number: 187736371
Start: 2293947
End: 2295248
Strand: Reverse
Name: gltX
Synonym: Amuc_1888
Alternate gene names: 187736371
Gene position: 2295248-2293947 (Counterclockwise)
Preceding gene: 187736374
Following gene: 187736370
Centisome position: 86.15
GC content: 58.29
Gene sequence:
>1302_bases ATGAGTCTCGTCAGAACAAGATTTGCACCTTCCCCCACGGGCTACCTTCACATCGGGGGCGCCCGCACCGCCCTGTTCAA CTGGCTGTTTGCCCGCAAGATGGGGGGAACCTTCATCCTCCGCATTGAAGATACGGATAACGCCCGCAACACGGAGGAGG CTACCCGCGCAATCTTCACCGGCATGGAATGGCTGGGGCTGGACTGGGATGAGGGGCCCATGAAGGGCGGCGATTGCGGT CCCTATTTCCAAAGCCAGCGCAACGATATTTACGACGCCTATTTCAAGAAGCTCCAGGACGCCGGCCGCGTGTACGAGGA TGAAGGAGCCTGGCGTTTCCGCTTTGACCGCTCCAAACCCGTCACCTTCCATGACCTGATTTGCGGAAACATCACCATCG ACTACCGGGACGCCTCCAACACCCCGGACATGGCTATCCGCCGCGCGGACGGTTCCTACATCTTCCACTTTGTCAACGTG GTGGACGATATTGAGATGAAGATGACCCATGTCATTCGCGGGGAAGACCACATCATGAACACGCCCAAGCACATCCAGCT GTTTGAGGCTTTCGGCGTCACTCCCCCTGTTTTCGCCCACATGCCGCTGATTTTGAACCAGGACGGCTCCAAAATGTCCA AGCGCGACGTGGGCGCTGCCCTGGGAACCTACCCGGAAGAAGGCTTTCTGCCGGAAGGCGTCATGAACTTTCTGGCCCTG CTGGGCTGGTCTCCCAAGGACGATACGGAAATTTTCTCCCCTCAGGAGCTGATCGGACGCTTCTCTCTGGAAGCCGTGAA CCACTCCGCCGCCAAATTCGATATCACCAAATGCCGCTGGGTCAACCAGCAGCACATCATCGCCCTGCCTGCGGAAGAAT TCGCCCTCCGGGCACGCCCCTTCTGTTTGAAAGCCGGCCTGCCGGATTCCCCGATTCTGGACGCCGCCATCGCCACCGTG CAAACGAAGGTGCAGACTCTGGCGGAAGTCCCGGATAAAATCCGTTTCTTTTTTGACCTGGGCATGGATCCGGAAGCCGT CTCCAAAGTTCAGCCGGAAGCCCTGGAACTGCTTTTCAAACTGGCGGACAGGCTGGAACAGGAACCGGAATGGGATGGAC ATGAACTCATTGGCGTGCTGAAAGCCTTTGCCAAGGAAAACGGCGTAAAAATGGGAGCCGTGATGTTCCCGGCCCGGGTG GCCCTCACCGGGTTAAGCGGCGGCCCGGACCTTTCCTCCGTCTTTTCCCTGCTGGGCCGGGAGGAAACCGTAAGGAGAAT CCGTTCCTTTTCTCTGGACTGA
Upstream 100 bases:
>100_bases ACGTCCTAAAAAATCCACTGCTTCCGCATCCCCGTTTTTTGGCATGCACCCCCTGTATCTGCTTGACGCGGGCAGACAGG CCCTTACTCTCTTACCCATC
Downstream 100 bases:
>100_bases TTCCCGCCGGAGTATTCATCTTTTCAAACGCACCGGAAATTCTCCGGTGCGGTTCCTGTTTACGGAAGGGCATCTTCCGG GGATTCGGGAAATGATGCCG
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS
Number of amino acids: Translated: 433; Mature: 432
Protein sequence:
>433_residues MSLVRTRFAPSPTGYLHIGGARTALFNWLFARKMGGTFILRIEDTDNARNTEEATRAIFTGMEWLGLDWDEGPMKGGDCG PYFQSQRNDIYDAYFKKLQDAGRVYEDEGAWRFRFDRSKPVTFHDLICGNITIDYRDASNTPDMAIRRADGSYIFHFVNV VDDIEMKMTHVIRGEDHIMNTPKHIQLFEAFGVTPPVFAHMPLILNQDGSKMSKRDVGAALGTYPEEGFLPEGVMNFLAL LGWSPKDDTEIFSPQELIGRFSLEAVNHSAAKFDITKCRWVNQQHIIALPAEEFALRARPFCLKAGLPDSPILDAAIATV QTKVQTLAEVPDKIRFFFDLGMDPEAVSKVQPEALELLFKLADRLEQEPEWDGHELIGVLKAFAKENGVKMGAVMFPARV ALTGLSGGPDLSSVFSLLGREETVRRIRSFSLD
Sequences:
>Translated_433_residues MSLVRTRFAPSPTGYLHIGGARTALFNWLFARKMGGTFILRIEDTDNARNTEEATRAIFTGMEWLGLDWDEGPMKGGDCG PYFQSQRNDIYDAYFKKLQDAGRVYEDEGAWRFRFDRSKPVTFHDLICGNITIDYRDASNTPDMAIRRADGSYIFHFVNV VDDIEMKMTHVIRGEDHIMNTPKHIQLFEAFGVTPPVFAHMPLILNQDGSKMSKRDVGAALGTYPEEGFLPEGVMNFLAL LGWSPKDDTEIFSPQELIGRFSLEAVNHSAAKFDITKCRWVNQQHIIALPAEEFALRARPFCLKAGLPDSPILDAAIATV QTKVQTLAEVPDKIRFFFDLGMDPEAVSKVQPEALELLFKLADRLEQEPEWDGHELIGVLKAFAKENGVKMGAVMFPARV ALTGLSGGPDLSSVFSLLGREETVRRIRSFSLD >Mature_432_residues SLVRTRFAPSPTGYLHIGGARTALFNWLFARKMGGTFILRIEDTDNARNTEEATRAIFTGMEWLGLDWDEGPMKGGDCGP YFQSQRNDIYDAYFKKLQDAGRVYEDEGAWRFRFDRSKPVTFHDLICGNITIDYRDASNTPDMAIRRADGSYIFHFVNVV DDIEMKMTHVIRGEDHIMNTPKHIQLFEAFGVTPPVFAHMPLILNQDGSKMSKRDVGAALGTYPEEGFLPEGVMNFLALL GWSPKDDTEIFSPQELIGRFSLEAVNHSAAKFDITKCRWVNQQHIIALPAEEFALRARPFCLKAGLPDSPILDAAIATVQ TKVQTLAEVPDKIRFFFDLGMDPEAVSKVQPEALELLFKLADRLEQEPEWDGHELIGVLKAFAKENGVKMGAVMFPARVA LTGLSGGPDLSSVFSLLGREETVRRIRSFSLD
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI134288884, Length=491, Percent_Identity=30.7535641547862, Blast_Score=204, Evalue=2e-52, Organism=Escherichia coli, GI1788743, Length=467, Percent_Identity=37.2591006423983, Blast_Score=295, Evalue=5e-81, Organism=Escherichia coli, GI226510925, Length=242, Percent_Identity=35.1239669421488, Blast_Score=115, Evalue=7e-27, Organism=Caenorhabditis elegans, GI71993394, Length=476, Percent_Identity=31.0924369747899, Blast_Score=198, Evalue=6e-51, Organism=Saccharomyces cerevisiae, GI6324540, Length=497, Percent_Identity=30.9859154929577, Blast_Score=204, Evalue=3e-53, Organism=Saccharomyces cerevisiae, GI6321192, Length=117, Percent_Identity=32.4786324786325, Blast_Score=67, Evalue=4e-12, Organism=Drosophila melanogaster, GI24665321, Length=486, Percent_Identity=31.4814814814815, Blast_Score=224, Evalue=6e-59,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYE_AKKM8 (B2UN91)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001878483.1 - GeneID: 6274856 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_1888 - HOGENOM: HBG628189 - OMA: IVRIATT - GO: GO:0005737 - HAMAP: MF_00022_B - InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:1.10.1160.10 - Gene3D: G3DSA:3.40.50.620 - Gene3D: G3DSA:1.10.10.350 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR00464
Pfam domain/function: PF00749 tRNA-synt_1c; SSF48163 tRNA-synt_bind
EC number: =6.1.1.17
Molecular weight: Translated: 48607; Mature: 48476
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 214-214
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLVRTRFAPSPTGYLHIGGARTALFNWLFARKMGGTFILRIEDTDNARNTEEATRAIFT CCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH GMEWLGLDWDEGPMKGGDCGPYFQSQRNDIYDAYFKKLQDAGRVYEDEGAWRFRFDRSKP CHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCEEECCCCEEEEECCCCC VTFHDLICGNITIDYRDASNTPDMAIRRADGSYIFHFVNVVDDIEMKMTHVIRGEDHIMN CCHHHEEECCEEEEECCCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHCCCHHHCC TPKHIQLFEAFGVTPPVFAHMPLILNQDGSKMSKRDVGAALGTYPEEGFLPEGVMNFLAL CCHHHHHHHHHCCCCHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH LGWSPKDDTEIFSPQELIGRFSLEAVNHSAAKFDITKCRWVNQQHIIALPAEEFALRARP HCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHEEECHHHEECCCCCEEEECHHHHHHHCCC FCLKAGLPDSPILDAAIATVQTKVQTLAEVPDKIRFFFDLGMDPEAVSKVQPEALELLFK EEEECCCCCCCHHHHHHHHHHHHHHHHHHCHHHEEEEEECCCCHHHHHHCCHHHHHHHHH LADRLEQEPEWDGHELIGVLKAFAKENGVKMGAVMFPARVALTGLSGGPDLSSVFSLLGR HHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEHEECCHHHEEECCCCCCCHHHHHHHHCC EETVRRIRSFSLD HHHHHHHHHCCCC >Mature Secondary Structure SLVRTRFAPSPTGYLHIGGARTALFNWLFARKMGGTFILRIEDTDNARNTEEATRAIFT CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH GMEWLGLDWDEGPMKGGDCGPYFQSQRNDIYDAYFKKLQDAGRVYEDEGAWRFRFDRSKP CHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCEEECCCCEEEEECCCCC VTFHDLICGNITIDYRDASNTPDMAIRRADGSYIFHFVNVVDDIEMKMTHVIRGEDHIMN CCHHHEEECCEEEEECCCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHCCCHHHCC TPKHIQLFEAFGVTPPVFAHMPLILNQDGSKMSKRDVGAALGTYPEEGFLPEGVMNFLAL CCHHHHHHHHHCCCCHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH LGWSPKDDTEIFSPQELIGRFSLEAVNHSAAKFDITKCRWVNQQHIIALPAEEFALRARP HCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHEEECHHHEECCCCCEEEECHHHHHHHCCC FCLKAGLPDSPILDAAIATVQTKVQTLAEVPDKIRFFFDLGMDPEAVSKVQPEALELLFK EEEECCCCCCCHHHHHHHHHHHHHHHHHHCHHHEEEEEECCCCHHHHHHCCHHHHHHHHH LADRLEQEPEWDGHELIGVLKAFAKENGVKMGAVMFPARVALTGLSGGPDLSSVFSLLGR HHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEHEECCHHHEEECCCCCCCHHHHHHHHCC EETVRRIRSFSLD HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA