Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187736364
Identifier: 187736364
GI number: 187736364
Start: 2286667
End: 2287359
Strand: Reverse
Name: 187736364
Synonym: Amuc_1881
Alternate gene names: NA
Gene position: 2287359-2286667 (Counterclockwise)
Preceding gene: 187736365
Following gene: 187736363
Centisome position: 85.86
GC content: 57.14
Gene sequence:
>693_bases ATGAGCGGATCCTCCCCCACCTTTTTCCATTCCCCCGCCGTTGTCGCGCTGGCCAGGGGTGCCGTTCTGATAGGAGTGCT GGCCGTATTGTTCTGGGGCGTGCGCACCTGCATCACCGCCCCGGCGGAAAAGCCGATGGCTGTAGCGGAAAAACTGATTG AAGCCGGCAGGGAAGCGGGCCTCACCCTGATCAATAAAGGTTTTTCCTCCAACCACGGCGGCGTGGCCCTGATTGTGCAG AAGGATGAAAAAGTGGCCAACCTGGTAACAGTGGAACGGACTTTTGAATATGAATACCGTTACTCCACCACCTGGTGGTG GAGCAGGAAAACGCTGATTCTGAAAGCGGCCTACCGCGCCCACGGGGGCATCAATCTGGAAGGGCCCGAACCTCTTCGGA TTATCATTCCCGCAAGAAACAAAGGCCCCATTACGGCAGAGGGCCTTCATGGCAAGCTGATTTCCTGTGAGATGGTGGAG GGGTCCCTGCGAATCGTGAAGGATGACGCCGGCATCTGGAACAGGCTGACTTCCGAAGATGCCGCCATTGCCGTCAACCA GCTGAACGAAAACGCCCGGAAGCATATCATGGAGAGCGGTTTGAAACACCAGGCTGAAGAAAATTTCCTCAAACGCCTCC GGGAAGAAGCCGGTCGGCCGGAAGAACCTTCCGGGAAGGACCGCTGGTTCTGA
Upstream 100 bases:
>100_bases TCATTGCCTTCACCTTCCTGGCCCTGTTCATGCCCCCCATCAGGGAACATGGTTCCCATGAAGACCCGGAACCCTGAATT TCCGCCACGCACAACATCTC
Downstream 100 bases:
>100_bases GACACGCGCATGCGGGATGAGGAAAACATTTTCAAGGCCGGTTGCTCCACGAAGCGCAGTTCCCCATTCCGCTCTTTTAT CTTGCCAAACCGGGTTGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MSGSSPTFFHSPAVVALARGAVLIGVLAVLFWGVRTCITAPAEKPMAVAEKLIEAGREAGLTLINKGFSSNHGGVALIVQ KDEKVANLVTVERTFEYEYRYSTTWWWSRKTLILKAAYRAHGGINLEGPEPLRIIIPARNKGPITAEGLHGKLISCEMVE GSLRIVKDDAGIWNRLTSEDAAIAVNQLNENARKHIMESGLKHQAEENFLKRLREEAGRPEEPSGKDRWF
Sequences:
>Translated_230_residues MSGSSPTFFHSPAVVALARGAVLIGVLAVLFWGVRTCITAPAEKPMAVAEKLIEAGREAGLTLINKGFSSNHGGVALIVQ KDEKVANLVTVERTFEYEYRYSTTWWWSRKTLILKAAYRAHGGINLEGPEPLRIIIPARNKGPITAEGLHGKLISCEMVE GSLRIVKDDAGIWNRLTSEDAAIAVNQLNENARKHIMESGLKHQAEENFLKRLREEAGRPEEPSGKDRWF >Mature_229_residues SGSSPTFFHSPAVVALARGAVLIGVLAVLFWGVRTCITAPAEKPMAVAEKLIEAGREAGLTLINKGFSSNHGGVALIVQK DEKVANLVTVERTFEYEYRYSTTWWWSRKTLILKAAYRAHGGINLEGPEPLRIIIPARNKGPITAEGLHGKLISCEMVEG SLRIVKDDAGIWNRLTSEDAAIAVNQLNENARKHIMESGLKHQAEENFLKRLREEAGRPEEPSGKDRWF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25414; Mature: 25283
Theoretical pI: Translated: 9.10; Mature: 9.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGSSPTFFHSPAVVALARGAVLIGVLAVLFWGVRTCITAPAEKPMAVAEKLIEAGREAG CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC LTLINKGFSSNHGGVALIVQKDEKVANLVTVERTFEYEYRYSTTWWWSRKTLILKAAYRA CEEEECCCCCCCCCEEEEEECCCCHHHEEEEEEEEEEEEEEEEEEEECCCEEEEEEHHHH HGGINLEGPEPLRIIIPARNKGPITAEGLHGKLISCEMVEGSLRIVKDDAGIWNRLTSED CCCCCCCCCCCEEEEEECCCCCCEEECCCCCCEEEEEEECCCEEEEECCCCHHHHHCCCC AAIAVNQLNENARKHIMESGLKHQAEENFLKRLREEAGRPEEPSGKDRWF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure SGSSPTFFHSPAVVALARGAVLIGVLAVLFWGVRTCITAPAEKPMAVAEKLIEAGREAG CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC LTLINKGFSSNHGGVALIVQKDEKVANLVTVERTFEYEYRYSTTWWWSRKTLILKAAYRA CEEEECCCCCCCCCEEEEEECCCCHHHEEEEEEEEEEEEEEEEEEEECCCEEEEEEHHHH HGGINLEGPEPLRIIIPARNKGPITAEGLHGKLISCEMVEGSLRIVKDDAGIWNRLTSED CCCCCCCCCCCEEEEEECCCCCCEEECCCCCCEEEEEEECCCEEEEECCCCHHHHHCCCC AAIAVNQLNENARKHIMESGLKHQAEENFLKRLREEAGRPEEPSGKDRWF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA