Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is fhs [H]
Identifier: 187736343
GI number: 187736343
Start: 2262706
End: 2264379
Strand: Reverse
Name: fhs [H]
Synonym: Amuc_1860
Alternate gene names: 187736343
Gene position: 2264379-2262706 (Counterclockwise)
Preceding gene: 187736344
Following gene: 187736342
Centisome position: 85.0
GC content: 57.83
Gene sequence:
>1674_bases ATGCCCATGAACCTTCTTGCCAAAAGAGGGGGCTTCCGTCATCATGTGCGCATGGTTACACCTGCATTCTCCGACTGTAT CAACAAGCTGGGCGTCGATGAAAAAGACGTCATTCCCTTCGGCCGCAACAAGGCCAAAATTTCCCTGGACGTATTGGACA AGCCGGCAACCCCCGGCAAACTCATCCTGGTATCCGCCATCACTCCCACCCCATCCGGAGAAGGCAAAACCACCGTTTCC ATCGGCTTGGCGCAGGGATTGCAGGCCATCGGCAAAAAAGTCTGCCTGGCGCTCCGGCAACCTTCCATGGGACCGGTGTT CGGCCGCAAGGGCGGAGCTACCGGAGGCGGCAAAAGCTCCCTGACGCCGGCAGAGGAAATCAACATGCATTTCACAGGGG ACTTCCACGCCATTACATCCGCCCACAACCTCATCAGCGCCATCATTGATAACGCCATGTTCTTCCACACGCTGAACATT GACGAACGCAAAGTCATATGGAAGCGGGTCATGGACATGAACGACCGTTCCCTGCGTTCCATCATCGTGGGGCTCAACAA GCAGGGGTTCCCCCGAGAAACAGGCTTCGATATCACCCCGGCTTCGGAAATCATGGCGTGCCTGTGCCTTGCCACTTCCT ACAAGGACATGGAAGAACGCATCAACCGCATCGTGATCGGATTCACGACGGATGACAAGCCCGTATTCGCAAGGGAACTG GGCATTACCGGTTCCGTCATGTCCCTGCTGAAAGATGCCCTGATGCCCAATCTGGTTCAATCCGTGGAAGGAGTGCCCTG TTTCCTGCACGGCGGCCCGTTTGCCAACATTGCCCACGGCTGCAACTCCGTGCTGGCCACCAGGATGGCCCTGCATTTTG GGGACTATGCCGTCACGGAAGCCGGATTCGCGTTTGACCTGGGTGCAGAGAAATTCCTGGATATCAAATGCCGCCAGTCC GGACTGGATCCGGCGGCCATTGTCATCGTAGCTACGGCACGCGCGCTGAAAATGCACGGGGGAACTGCCCTTGCGGATCT GAAAAACACGGATGTGGATGCGCTGAAAAAAGGCCTTGCCAACCTGGATGCGCATCTGGACGCTGCCGCCCACTACAAAC GCCCCGTTGTGGTCGCCGTCAACAAATTCTTTGACGACTCCCGGGAAGAACTGGACGCTATCGTGAAACACTGCGCGGAA CGCGGTATTCCCTGCGCCATTGCGGATATCTTCTCCCAGGGAGGAGAAGGAGGCAAAGACCTGGCCCAAATGGTTGTGGA AGCTGCGGACAGGAGTTCCGCCCCTTTCAAGCCCCTCTATGAATCCGCCCTGCCGGTGGAAGAAAAACTCAACATCATTG CCCGCAACATTTACGGGGCGGACGGTGTGGAATTGACAGCCGCCGCCAAAAAGAAGCTGGCCCAGTTTGAAGCCAGCCGC CTGACGGACCTTCCCATCTGCATGGCAAAAACCCAGAACTCCCTTTCCGACAACGGACGCCTCCGAGGACGCCCCACCGG CTTCACCATCACCGTGCGCGACTTTGAAATCGCCAACGGGGCCGGCTTCCTGGTGGCCCTCTGCGGGGAAATCATGCGCA TGCCCGCCCTTCCCGTCTCACCGAACGCCATGCACATCTACCTGGATGACAAGGGCAACGTCCAGGGGCTCTGA
Upstream 100 bases:
>100_bases TATTTCCGGAGGTTCTCCCGGAGTTGCATGGATATCCGGGGAATGTCGCGGGACAGGAAGAAGGCGGCCCTTTCCCTCTC ATTGATTCATCCGGTCCGGA
Downstream 100 bases:
>100_bases AAAATATCACCAACCGCGCCGCACGCCATGAAAATCGCCATTCTGGGAGCCGGAGCCCTGGGTTGCTATTACGGAGCCAG ACTTCAGGAATCGGGGCAGG
Product: Formate--tetrahydrofolate ligase
Products: NA
Alternate protein names: Formyltetrahydrofolate synthetase; FHS; FTHFS [H]
Number of amino acids: Translated: 557; Mature: 556
Protein sequence:
>557_residues MPMNLLAKRGGFRHHVRMVTPAFSDCINKLGVDEKDVIPFGRNKAKISLDVLDKPATPGKLILVSAITPTPSGEGKTTVS IGLAQGLQAIGKKVCLALRQPSMGPVFGRKGGATGGGKSSLTPAEEINMHFTGDFHAITSAHNLISAIIDNAMFFHTLNI DERKVIWKRVMDMNDRSLRSIIVGLNKQGFPRETGFDITPASEIMACLCLATSYKDMEERINRIVIGFTTDDKPVFAREL GITGSVMSLLKDALMPNLVQSVEGVPCFLHGGPFANIAHGCNSVLATRMALHFGDYAVTEAGFAFDLGAEKFLDIKCRQS GLDPAAIVIVATARALKMHGGTALADLKNTDVDALKKGLANLDAHLDAAAHYKRPVVVAVNKFFDDSREELDAIVKHCAE RGIPCAIADIFSQGGEGGKDLAQMVVEAADRSSAPFKPLYESALPVEEKLNIIARNIYGADGVELTAAAKKKLAQFEASR LTDLPICMAKTQNSLSDNGRLRGRPTGFTITVRDFEIANGAGFLVALCGEIMRMPALPVSPNAMHIYLDDKGNVQGL
Sequences:
>Translated_557_residues MPMNLLAKRGGFRHHVRMVTPAFSDCINKLGVDEKDVIPFGRNKAKISLDVLDKPATPGKLILVSAITPTPSGEGKTTVS IGLAQGLQAIGKKVCLALRQPSMGPVFGRKGGATGGGKSSLTPAEEINMHFTGDFHAITSAHNLISAIIDNAMFFHTLNI DERKVIWKRVMDMNDRSLRSIIVGLNKQGFPRETGFDITPASEIMACLCLATSYKDMEERINRIVIGFTTDDKPVFAREL GITGSVMSLLKDALMPNLVQSVEGVPCFLHGGPFANIAHGCNSVLATRMALHFGDYAVTEAGFAFDLGAEKFLDIKCRQS GLDPAAIVIVATARALKMHGGTALADLKNTDVDALKKGLANLDAHLDAAAHYKRPVVVAVNKFFDDSREELDAIVKHCAE RGIPCAIADIFSQGGEGGKDLAQMVVEAADRSSAPFKPLYESALPVEEKLNIIARNIYGADGVELTAAAKKKLAQFEASR LTDLPICMAKTQNSLSDNGRLRGRPTGFTITVRDFEIANGAGFLVALCGEIMRMPALPVSPNAMHIYLDDKGNVQGL >Mature_556_residues PMNLLAKRGGFRHHVRMVTPAFSDCINKLGVDEKDVIPFGRNKAKISLDVLDKPATPGKLILVSAITPTPSGEGKTTVSI GLAQGLQAIGKKVCLALRQPSMGPVFGRKGGATGGGKSSLTPAEEINMHFTGDFHAITSAHNLISAIIDNAMFFHTLNID ERKVIWKRVMDMNDRSLRSIIVGLNKQGFPRETGFDITPASEIMACLCLATSYKDMEERINRIVIGFTTDDKPVFARELG ITGSVMSLLKDALMPNLVQSVEGVPCFLHGGPFANIAHGCNSVLATRMALHFGDYAVTEAGFAFDLGAEKFLDIKCRQSG LDPAAIVIVATARALKMHGGTALADLKNTDVDALKKGLANLDAHLDAAAHYKRPVVVAVNKFFDDSREELDAIVKHCAER GIPCAIADIFSQGGEGGKDLAQMVVEAADRSSAPFKPLYESALPVEEKLNIIARNIYGADGVELTAAAKKKLAQFEASRL TDLPICMAKTQNSLSDNGRLRGRPTGFTITVRDFEIANGAGFLVALCGEIMRMPALPVSPNAMHIYLDDKGNVQGL
Specific function: Unknown
COG id: COG2759
COG function: function code F; Formyltetrahydrofolate synthetase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the formate--tetrahydrofolate ligase family [H]
Homologues:
Organism=Homo sapiens, GI222136639, Length=600, Percent_Identity=41.6666666666667, Blast_Score=404, Evalue=1e-112, Organism=Homo sapiens, GI36796743, Length=617, Percent_Identity=40.5186385737439, Blast_Score=381, Evalue=1e-106, Organism=Homo sapiens, GI310124614, Length=105, Percent_Identity=35.2380952380952, Blast_Score=68, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17568737, Length=593, Percent_Identity=43.8448566610455, Blast_Score=423, Evalue=1e-118, Organism=Caenorhabditis elegans, GI17568739, Length=593, Percent_Identity=43.8448566610455, Blast_Score=423, Evalue=1e-118, Organism=Saccharomyces cerevisiae, GI6321643, Length=609, Percent_Identity=40.0656814449918, Blast_Score=395, Evalue=1e-111, Organism=Saccharomyces cerevisiae, GI6319558, Length=639, Percent_Identity=38.1846635367762, Blast_Score=392, Evalue=1e-110, Organism=Drosophila melanogaster, GI62472483, Length=600, Percent_Identity=39.8333333333333, Blast_Score=403, Evalue=1e-112, Organism=Drosophila melanogaster, GI45551871, Length=600, Percent_Identity=39.8333333333333, Blast_Score=403, Evalue=1e-112, Organism=Drosophila melanogaster, GI24645718, Length=600, Percent_Identity=39.8333333333333, Blast_Score=402, Evalue=1e-112, Organism=Drosophila melanogaster, GI17137370, Length=600, Percent_Identity=39.8333333333333, Blast_Score=402, Evalue=1e-112,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000559 - InterPro: IPR020628 [H]
Pfam domain/function: PF01268 FTHFS [H]
EC number: =6.3.4.3 [H]
Molecular weight: Translated: 59797; Mature: 59666
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMNLLAKRGGFRHHVRMVTPAFSDCINKLGVDEKDVIPFGRNKAKISLDVLDKPATPGK CCCHHHHHCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCC LILVSAITPTPSGEGKTTVSIGLAQGLQAIGKKVCLALRQPSMGPVFGRKGGATGGGKSS EEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC LTPAEEINMHFTGDFHAITSAHNLISAIIDNAMFFHTLNIDERKVIWKRVMDMNDRSLRS CCCHHHCCEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCHHHHH IIVGLNKQGFPRETGFDITPASEIMACLCLATSYKDMEERINRIVIGFTTDDKPVFAREL HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHH GITGSVMSLLKDALMPNLVQSVEGVPCFLHGGPFANIAHGCNSVLATRMALHFGDYAVTE CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHC AGFAFDLGAEKFLDIKCRQSGLDPAAIVIVATARALKMHGGTALADLKNTDVDALKKGLA CCCEEECCCCHHEEEEHHCCCCCCEEEEEEEHHHHHHCCCCEEEECCCCCCHHHHHHHHH NLDAHLDAAAHYKRPVVVAVNKFFDDSREELDAIVKHCAERGIPCAIADIFSQGGEGGKD HHHHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHHHHHHHHCCCCEEHHHHHHCCCCCHHH LAQMVVEAADRSSAPFKPLYESALPVEEKLNIIARNIYGADGVELTAAAKKKLAQFEASR HHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHH LTDLPICMAKTQNSLSDNGRLRGRPTGFTITVRDFEIANGAGFLVALCGEIMRMPALPVS CCCCCEEHHHCCCCCCCCCEECCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCC PNAMHIYLDDKGNVQGL CCEEEEEECCCCCCCCC >Mature Secondary Structure PMNLLAKRGGFRHHVRMVTPAFSDCINKLGVDEKDVIPFGRNKAKISLDVLDKPATPGK CCHHHHHCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCC LILVSAITPTPSGEGKTTVSIGLAQGLQAIGKKVCLALRQPSMGPVFGRKGGATGGGKSS EEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC LTPAEEINMHFTGDFHAITSAHNLISAIIDNAMFFHTLNIDERKVIWKRVMDMNDRSLRS CCCHHHCCEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCHHHHH IIVGLNKQGFPRETGFDITPASEIMACLCLATSYKDMEERINRIVIGFTTDDKPVFAREL HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHH GITGSVMSLLKDALMPNLVQSVEGVPCFLHGGPFANIAHGCNSVLATRMALHFGDYAVTE CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHC AGFAFDLGAEKFLDIKCRQSGLDPAAIVIVATARALKMHGGTALADLKNTDVDALKKGLA CCCEEECCCCHHEEEEHHCCCCCCEEEEEEEHHHHHHCCCCEEEECCCCCCHHHHHHHHH NLDAHLDAAAHYKRPVVVAVNKFFDDSREELDAIVKHCAERGIPCAIADIFSQGGEGGKD HHHHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHHHHHHHHCCCCEEHHHHHHCCCCCHHH LAQMVVEAADRSSAPFKPLYESALPVEEKLNIIARNIYGADGVELTAAAKKKLAQFEASR HHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHH LTDLPICMAKTQNSLSDNGRLRGRPTGFTITVRDFEIANGAGFLVALCGEIMRMPALPVS CCCCCEEHHHCCCCCCCCCEECCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCC PNAMHIYLDDKGNVQGL CCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA