Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yqxC [H]
Identifier: 187736312
GI number: 187736312
Start: 2216321
End: 2217049
Strand: Reverse
Name: yqxC [H]
Synonym: Amuc_1825
Alternate gene names: 187736312
Gene position: 2217049-2216321 (Counterclockwise)
Preceding gene: 187736314
Following gene: 187736308
Centisome position: 83.22
GC content: 56.93
Gene sequence:
>729_bases ATGAGCAAGCAACGACTCGATATCCTTCTGGTTTCCCGCAATCTCGTAGAATCCCGGGAGCTGGCCCAGCGGCTCATCAT TGCCGGAGAAGTGAACGTGGGGGGGCATCCCTCTACCAAGCCCGGTCTCAAGGTTAATGAAGACGCGGATATCACCATTA GAAACCGTCCCCGCTATGTCAGCCGCGGCGGCCTGAAAATGGAAGGAGCCCTGAATGCCTTCCCCGTTTCTGCGGAAGGC AAGGTCTGCCTTGACATTGGGGCTTCCACCGGAGGTTTTACGGACTGCCTGCTCCAGCACGGAGCCGCCAGGGTGCATGC CATAGACGTAGGAACCAACCAGCTTGTCTGGAAACTGCGGCAGGATCCCCGCGTCATTGTGAAGGAAAAATTCAACGCCC GCTACATGACTCCGGAGGATATTGGGGAACAAGTGGATCTGATCGTTTCCGACGTCTCCTTTATCTCTCTGAAAAAAATC CTTCCCGCCGCCTTTCCTCTGCTTAAACAAGGGGGGGATGCCCTGGTGCTCATCAAGCCCCAGTTTGAACTCCAGCCGGA AGATATAGGCCCCGGCGGCATCGTCCGGGACCCGGCTTTGCACCGGAGGGCGGTGGACTCCATACGCACTTTCGTCACGG ACGAACTGAACCGTTCCTGGATGGGGTGCGAACCTTCCCCTATCACGGGAACTGACGGCAACCATGAATTCCTGGCATGG CTCAAATAG
Upstream 100 bases:
>100_bases AATGCCGCATTTTTACGCCCGAATGCCTCTCTGCGCTCGGTTTTTCTTGATTCTTCATGCGGTTTCATGAAATACCTGCG TTCACACCTTTTTCCGAATC
Downstream 100 bases:
>100_bases CCCCGGCCTTTTCCTGTCCGAAGAAATCCTCCCGGCACACCGTGGACGGGTTCAACAGTTTTCCTCAAACCTGTTGTCAT CCCATAATTCCGCCTCAAAG
Product: hemolysin A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MSKQRLDILLVSRNLVESRELAQRLIIAGEVNVGGHPSTKPGLKVNEDADITIRNRPRYVSRGGLKMEGALNAFPVSAEG KVCLDIGASTGGFTDCLLQHGAARVHAIDVGTNQLVWKLRQDPRVIVKEKFNARYMTPEDIGEQVDLIVSDVSFISLKKI LPAAFPLLKQGGDALVLIKPQFELQPEDIGPGGIVRDPALHRRAVDSIRTFVTDELNRSWMGCEPSPITGTDGNHEFLAW LK
Sequences:
>Translated_242_residues MSKQRLDILLVSRNLVESRELAQRLIIAGEVNVGGHPSTKPGLKVNEDADITIRNRPRYVSRGGLKMEGALNAFPVSAEG KVCLDIGASTGGFTDCLLQHGAARVHAIDVGTNQLVWKLRQDPRVIVKEKFNARYMTPEDIGEQVDLIVSDVSFISLKKI LPAAFPLLKQGGDALVLIKPQFELQPEDIGPGGIVRDPALHRRAVDSIRTFVTDELNRSWMGCEPSPITGTDGNHEFLAW LK >Mature_241_residues SKQRLDILLVSRNLVESRELAQRLIIAGEVNVGGHPSTKPGLKVNEDADITIRNRPRYVSRGGLKMEGALNAFPVSAEGK VCLDIGASTGGFTDCLLQHGAARVHAIDVGTNQLVWKLRQDPRVIVKEKFNARYMTPEDIGEQVDLIVSDVSFISLKKIL PAAFPLLKQGGDALVLIKPQFELQPEDIGPGGIVRDPALHRRAVDSIRTFVTDELNRSWMGCEPSPITGTDGNHEFLAWL K
Specific function: Unknown
COG id: COG1189
COG function: function code J; Predicted rRNA methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S4 RNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004538 - InterPro: IPR002877 - InterPro: IPR002942 [H]
Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]
EC number: NA
Molecular weight: Translated: 26566; Mature: 26435
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: PS50889 S4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKQRLDILLVSRNLVESRELAQRLIIAGEVNVGGHPSTKPGLKVNEDADITIRNRPRYV CCCCCEEEEEECHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEECCCCCEEECCCCCEE SRGGLKMEGALNAFPVSAEGKVCLDIGASTGGFTDCLLQHGAARVHAIDVGTNQLVWKLR CCCCEEECCCCCEEEECCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCEEEEEC QDPRVIVKEKFNARYMTPEDIGEQVDLIVSDVSFISLKKILPAAFPLLKQGGDALVLIKP CCCEEEEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC QFELQPEDIGPGGIVRDPALHRRAVDSIRTFVTDELNRSWMGCEPSPITGTDGNHEFLAW CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE LK EC >Mature Secondary Structure SKQRLDILLVSRNLVESRELAQRLIIAGEVNVGGHPSTKPGLKVNEDADITIRNRPRYV CCCCEEEEEECHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEECCCCCEEECCCCCEE SRGGLKMEGALNAFPVSAEGKVCLDIGASTGGFTDCLLQHGAARVHAIDVGTNQLVWKLR CCCCEEECCCCCEEEECCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCEEEEEC QDPRVIVKEKFNARYMTPEDIGEQVDLIVSDVSFISLKKILPAAFPLLKQGGDALVLIKP CCCEEEEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC QFELQPEDIGPGGIVRDPALHRRAVDSIRTFVTDELNRSWMGCEPSPITGTDGNHEFLAW CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE LK EC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377; 2507400 [H]