Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is yqxC [H]

Identifier: 187736312

GI number: 187736312

Start: 2216321

End: 2217049

Strand: Reverse

Name: yqxC [H]

Synonym: Amuc_1825

Alternate gene names: 187736312

Gene position: 2217049-2216321 (Counterclockwise)

Preceding gene: 187736314

Following gene: 187736308

Centisome position: 83.22

GC content: 56.93

Gene sequence:

>729_bases
ATGAGCAAGCAACGACTCGATATCCTTCTGGTTTCCCGCAATCTCGTAGAATCCCGGGAGCTGGCCCAGCGGCTCATCAT
TGCCGGAGAAGTGAACGTGGGGGGGCATCCCTCTACCAAGCCCGGTCTCAAGGTTAATGAAGACGCGGATATCACCATTA
GAAACCGTCCCCGCTATGTCAGCCGCGGCGGCCTGAAAATGGAAGGAGCCCTGAATGCCTTCCCCGTTTCTGCGGAAGGC
AAGGTCTGCCTTGACATTGGGGCTTCCACCGGAGGTTTTACGGACTGCCTGCTCCAGCACGGAGCCGCCAGGGTGCATGC
CATAGACGTAGGAACCAACCAGCTTGTCTGGAAACTGCGGCAGGATCCCCGCGTCATTGTGAAGGAAAAATTCAACGCCC
GCTACATGACTCCGGAGGATATTGGGGAACAAGTGGATCTGATCGTTTCCGACGTCTCCTTTATCTCTCTGAAAAAAATC
CTTCCCGCCGCCTTTCCTCTGCTTAAACAAGGGGGGGATGCCCTGGTGCTCATCAAGCCCCAGTTTGAACTCCAGCCGGA
AGATATAGGCCCCGGCGGCATCGTCCGGGACCCGGCTTTGCACCGGAGGGCGGTGGACTCCATACGCACTTTCGTCACGG
ACGAACTGAACCGTTCCTGGATGGGGTGCGAACCTTCCCCTATCACGGGAACTGACGGCAACCATGAATTCCTGGCATGG
CTCAAATAG

Upstream 100 bases:

>100_bases
AATGCCGCATTTTTACGCCCGAATGCCTCTCTGCGCTCGGTTTTTCTTGATTCTTCATGCGGTTTCATGAAATACCTGCG
TTCACACCTTTTTCCGAATC

Downstream 100 bases:

>100_bases
CCCCGGCCTTTTCCTGTCCGAAGAAATCCTCCCGGCACACCGTGGACGGGTTCAACAGTTTTCCTCAAACCTGTTGTCAT
CCCATAATTCCGCCTCAAAG

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSKQRLDILLVSRNLVESRELAQRLIIAGEVNVGGHPSTKPGLKVNEDADITIRNRPRYVSRGGLKMEGALNAFPVSAEG
KVCLDIGASTGGFTDCLLQHGAARVHAIDVGTNQLVWKLRQDPRVIVKEKFNARYMTPEDIGEQVDLIVSDVSFISLKKI
LPAAFPLLKQGGDALVLIKPQFELQPEDIGPGGIVRDPALHRRAVDSIRTFVTDELNRSWMGCEPSPITGTDGNHEFLAW
LK

Sequences:

>Translated_242_residues
MSKQRLDILLVSRNLVESRELAQRLIIAGEVNVGGHPSTKPGLKVNEDADITIRNRPRYVSRGGLKMEGALNAFPVSAEG
KVCLDIGASTGGFTDCLLQHGAARVHAIDVGTNQLVWKLRQDPRVIVKEKFNARYMTPEDIGEQVDLIVSDVSFISLKKI
LPAAFPLLKQGGDALVLIKPQFELQPEDIGPGGIVRDPALHRRAVDSIRTFVTDELNRSWMGCEPSPITGTDGNHEFLAW
LK
>Mature_241_residues
SKQRLDILLVSRNLVESRELAQRLIIAGEVNVGGHPSTKPGLKVNEDADITIRNRPRYVSRGGLKMEGALNAFPVSAEGK
VCLDIGASTGGFTDCLLQHGAARVHAIDVGTNQLVWKLRQDPRVIVKEKFNARYMTPEDIGEQVDLIVSDVSFISLKKIL
PAAFPLLKQGGDALVLIKPQFELQPEDIGPGGIVRDPALHRRAVDSIRTFVTDELNRSWMGCEPSPITGTDGNHEFLAWL
K

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26566; Mature: 26435

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQRLDILLVSRNLVESRELAQRLIIAGEVNVGGHPSTKPGLKVNEDADITIRNRPRYV
CCCCCEEEEEECHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEECCCCCEEECCCCCEE
SRGGLKMEGALNAFPVSAEGKVCLDIGASTGGFTDCLLQHGAARVHAIDVGTNQLVWKLR
CCCCEEECCCCCEEEECCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCEEEEEC
QDPRVIVKEKFNARYMTPEDIGEQVDLIVSDVSFISLKKILPAAFPLLKQGGDALVLIKP
CCCEEEEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
QFELQPEDIGPGGIVRDPALHRRAVDSIRTFVTDELNRSWMGCEPSPITGTDGNHEFLAW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE
LK
EC
>Mature Secondary Structure 
SKQRLDILLVSRNLVESRELAQRLIIAGEVNVGGHPSTKPGLKVNEDADITIRNRPRYV
CCCCEEEEEECHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEECCCCCEEECCCCCEE
SRGGLKMEGALNAFPVSAEGKVCLDIGASTGGFTDCLLQHGAARVHAIDVGTNQLVWKLR
CCCCEEECCCCCEEEECCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCEEEEEC
QDPRVIVKEKFNARYMTPEDIGEQVDLIVSDVSFISLKKILPAAFPLLKQGGDALVLIKP
CCCEEEEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
QFELQPEDIGPGGIVRDPALHRRAVDSIRTFVTDELNRSWMGCEPSPITGTDGNHEFLAW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE
LK
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]