Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736306
Identifier: 187736306
GI number: 187736306
Start: 2207845
End: 2210313
Strand: Direct
Name: 187736306
Synonym: Amuc_1819
Alternate gene names: NA
Gene position: 2207845-2210313 (Clockwise)
Preceding gene: 187736305
Following gene: 187736309
Centisome position: 82.87
GC content: 59.05
Gene sequence:
>2469_bases ATGGCAAAACAAGTATTGCAGCGGCTCAGTTTTACGGCCGGGGAGCTGACCCCGTGGCTGGCCGGACGCGCCGACCTGGA TCCCGTGTCCCGTGGCGCCTCCCGGCTGATAAATTTTCTGGTCAGCCCCTTCGGCGGTCTCCGGCGCAGGCCGGGAACAC GCCTGGTCGCCCGCGCGGGATGCCGGGAGGGCATGGTGAGGCTGGTTTCCTTCAAGTACTCCACGGGCGTGCAGTTCATG CTGGAAGTGGGGCGCGGCTACGTCCGGTATTTTAAAAATGGCGCGCTTCTGACGGATACGGAAGGCGGGGTGCTGGAAAC GCTTACTCCGTGGAAGACGGATGAACAGGTAAGCAACCTCCGGATGCAGCAGCTGAATGACGTGATTTACTGCGTGGAAC CTTCTACGCCGCCTATGACGCTGGCCCGCTACGCAGACGATGACTGGCGGCTGGAAGCGTTGGAGTTTTCCGGAATTCCT TATGAGAGTTCCCTGTTGAATGCCGTGCGGCTGGAATGCCGCATGGTGCGGGAGGGGGGCGTCAACAGGCTGCTGGCGAC GGCGGACGATGATGTATTCACTCCGGAAATGGAGGGAAAGGAGTTTCTGCGCATCACCAGGAAATATGGAGAAACCGTGG CGGAGGGAAACCAGATGCCTTTTTACCATTTGACGACTCTGAGCCGGGATCTTTACAAGGGAGAGACTTTTTCCATGAAC CGGGAGGACGGCTGGCGGCAGGCTTATACCTGCATCCGCGATTTCAGCCGGGAAAGCGACTACCAGGAAGGGGTGGACCG CCCGGAGAGGTACACGGCCTTTTTTGAAAAAGGGGCCGATGCCAGTACCCGCATTTATGTCAACGGCGCGTGGACGTTGG AGACGACGGGGACCTGGGATGCGGAGTGGGAAATCTGCCGGGGGTATCCGGACGGCTCCAATTACCTTCCCAACCGTCCG GAATTAGTGTGGCATTCCGTGAAGAGCTTCCAGCAGAGGGAGGGGTTCCGGAATAATTTCACCCTGAGCGGCAATGAAGA GGAAATGTCCTACTACAAAATCCGCCTCATGGCTTACAAGGACGGGTCTTCTGCGGGAACGCCCGTATTCCGCGCATCAG CCGGCTCCTTTAACCATGAAGTGGTGGTGGAGGAATATGTTTCCCCGCGCAGCGCCTATCTTGCGAGTGCCCTTCATCTG TCCTATCATACGCTGAGTGACTGTGATACCAATGACTGGTCTTTTGGTGCGTTCGGGGTCCGGAACGGTTATCCGTGCAC GGTAGAGTTCCATCAGGGGCGGCTGTGGTTCGGAGGCACTCCTGGGCAGCCCCAGACGCTGTGGGCCAGCAGGGTGGATG ATTTTTCCGCGTTTACGCCCGGCATTCCGGCGGATTCCCCCATGATTCTGACAATGGCCGCTTCCCAGCAGAACCGCATT TCCTGGATAGCTTCCCTCCGGGGGCTGATGATTGGAACCAGCGAGGGGGAATGGCGTCTGTCCGCCACCAATTCAGAAGG GTTGAATGCCTCTAATGCCGGATTTGAGCGCCATTCCGGCGTGGGGTCTGCCTCCCTGGATGCCCTGTCTGTAGAAAACA GCCTTCTTTTTGTGCAGCAGGGCGGGATGAAGGTTCGGGAATTATTTTATTCTCTGGAGGCCGACGGTTACCAGACAAGG GATGTGAGCCTGTTGTCCGACCATTTGCTGGGGGAGGGAATTGTGGACTGGACTGTACAGAGGAGCACGGCGTTCCATGT CTGGTGCGTTCTGGGTGACGGCAGCGCCGTATGCATGACTCTGAACAGGGAACAGAATGTGGTGGCGTGGCATGCACACC GCCTGGAACACGGCCGCATTCTGTCCGTGGCGTCCCTGCGCGGTTCCCGCAACACACCGGACGAGGAAGTATGGTTTGCC GTGGCGCGCGGGGAAGGGGAGGAGGCCTGCATTACGGTGGAATGCATGGCGGATGGGAATGCCTGCCTGGATGCCTGCAC GGAGGCTGTCGTGAAGGGGGAGACGCTGTCCGGCCTGAGCCATTTGGCGGGATGCGGCGCCTTTCTGGTGGGCGGGGACG GCGCATGCATGGACATCAGCGTTGACGGAGCCGGGAATGCCGCCTGTCCCGGAAGGGGGGACGGGGAAACAGTATCCGTA GGCCTGGCCGCTCCGGCGGAAGTAAGGACGATGCCCCTGGAAACGCTTGAGACGCTGGGTTGCTTTAAAAAGCAGCTCGG TGCGCGCGTCCTGCTTCATGAAAGCACCCTGAAATTCCGCTACGGAACGGGAACTCCGGAGGCATGGAAGGATTTCCAGC CCGGCAGGTACGGTGTTTCCGAACCTTACTCCGGCTATGTGCGGATGATTCACAACTATGGTATGGATGAGCAGTCTTCC TTTGCCCTCCGTGTGGAGACTCCGGCTCCATTTAACCTTCTGGCCCTGGTGCTGGATGTGGAATTATAG
Upstream 100 bases:
>100_bases ATTGCCCTGTAGCTGGAGGTTGAGGCCCGGGATGCATTTCGGAAAAACCTTTCAGGCGTGTTGACGTTCTTTGCCCCTCT CTGCTTTCGTGGTGAGGAAT
Downstream 100 bases:
>100_bases GCGCAGGAGTGCGTTTACGGCTGTTCAGCCGCCTCTTCATGGGAAAGCATATGCACAATGACCTTGATGCCGTGTTTTTC CCCAGCCGCCTTCGCCAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 822; Mature: 821
Protein sequence:
>822_residues MAKQVLQRLSFTAGELTPWLAGRADLDPVSRGASRLINFLVSPFGGLRRRPGTRLVARAGCREGMVRLVSFKYSTGVQFM LEVGRGYVRYFKNGALLTDTEGGVLETLTPWKTDEQVSNLRMQQLNDVIYCVEPSTPPMTLARYADDDWRLEALEFSGIP YESSLLNAVRLECRMVREGGVNRLLATADDDVFTPEMEGKEFLRITRKYGETVAEGNQMPFYHLTTLSRDLYKGETFSMN REDGWRQAYTCIRDFSRESDYQEGVDRPERYTAFFEKGADASTRIYVNGAWTLETTGTWDAEWEICRGYPDGSNYLPNRP ELVWHSVKSFQQREGFRNNFTLSGNEEEMSYYKIRLMAYKDGSSAGTPVFRASAGSFNHEVVVEEYVSPRSAYLASALHL SYHTLSDCDTNDWSFGAFGVRNGYPCTVEFHQGRLWFGGTPGQPQTLWASRVDDFSAFTPGIPADSPMILTMAASQQNRI SWIASLRGLMIGTSEGEWRLSATNSEGLNASNAGFERHSGVGSASLDALSVENSLLFVQQGGMKVRELFYSLEADGYQTR DVSLLSDHLLGEGIVDWTVQRSTAFHVWCVLGDGSAVCMTLNREQNVVAWHAHRLEHGRILSVASLRGSRNTPDEEVWFA VARGEGEEACITVECMADGNACLDACTEAVVKGETLSGLSHLAGCGAFLVGGDGACMDISVDGAGNAACPGRGDGETVSV GLAAPAEVRTMPLETLETLGCFKKQLGARVLLHESTLKFRYGTGTPEAWKDFQPGRYGVSEPYSGYVRMIHNYGMDEQSS FALRVETPAPFNLLALVLDVEL
Sequences:
>Translated_822_residues MAKQVLQRLSFTAGELTPWLAGRADLDPVSRGASRLINFLVSPFGGLRRRPGTRLVARAGCREGMVRLVSFKYSTGVQFM LEVGRGYVRYFKNGALLTDTEGGVLETLTPWKTDEQVSNLRMQQLNDVIYCVEPSTPPMTLARYADDDWRLEALEFSGIP YESSLLNAVRLECRMVREGGVNRLLATADDDVFTPEMEGKEFLRITRKYGETVAEGNQMPFYHLTTLSRDLYKGETFSMN REDGWRQAYTCIRDFSRESDYQEGVDRPERYTAFFEKGADASTRIYVNGAWTLETTGTWDAEWEICRGYPDGSNYLPNRP ELVWHSVKSFQQREGFRNNFTLSGNEEEMSYYKIRLMAYKDGSSAGTPVFRASAGSFNHEVVVEEYVSPRSAYLASALHL SYHTLSDCDTNDWSFGAFGVRNGYPCTVEFHQGRLWFGGTPGQPQTLWASRVDDFSAFTPGIPADSPMILTMAASQQNRI SWIASLRGLMIGTSEGEWRLSATNSEGLNASNAGFERHSGVGSASLDALSVENSLLFVQQGGMKVRELFYSLEADGYQTR DVSLLSDHLLGEGIVDWTVQRSTAFHVWCVLGDGSAVCMTLNREQNVVAWHAHRLEHGRILSVASLRGSRNTPDEEVWFA VARGEGEEACITVECMADGNACLDACTEAVVKGETLSGLSHLAGCGAFLVGGDGACMDISVDGAGNAACPGRGDGETVSV GLAAPAEVRTMPLETLETLGCFKKQLGARVLLHESTLKFRYGTGTPEAWKDFQPGRYGVSEPYSGYVRMIHNYGMDEQSS FALRVETPAPFNLLALVLDVEL >Mature_821_residues AKQVLQRLSFTAGELTPWLAGRADLDPVSRGASRLINFLVSPFGGLRRRPGTRLVARAGCREGMVRLVSFKYSTGVQFML EVGRGYVRYFKNGALLTDTEGGVLETLTPWKTDEQVSNLRMQQLNDVIYCVEPSTPPMTLARYADDDWRLEALEFSGIPY ESSLLNAVRLECRMVREGGVNRLLATADDDVFTPEMEGKEFLRITRKYGETVAEGNQMPFYHLTTLSRDLYKGETFSMNR EDGWRQAYTCIRDFSRESDYQEGVDRPERYTAFFEKGADASTRIYVNGAWTLETTGTWDAEWEICRGYPDGSNYLPNRPE LVWHSVKSFQQREGFRNNFTLSGNEEEMSYYKIRLMAYKDGSSAGTPVFRASAGSFNHEVVVEEYVSPRSAYLASALHLS YHTLSDCDTNDWSFGAFGVRNGYPCTVEFHQGRLWFGGTPGQPQTLWASRVDDFSAFTPGIPADSPMILTMAASQQNRIS WIASLRGLMIGTSEGEWRLSATNSEGLNASNAGFERHSGVGSASLDALSVENSLLFVQQGGMKVRELFYSLEADGYQTRD VSLLSDHLLGEGIVDWTVQRSTAFHVWCVLGDGSAVCMTLNREQNVVAWHAHRLEHGRILSVASLRGSRNTPDEEVWFAV ARGEGEEACITVECMADGNACLDACTEAVVKGETLSGLSHLAGCGAFLVGGDGACMDISVDGAGNAACPGRGDGETVSVG LAAPAEVRTMPLETLETLGCFKKQLGARVLLHESTLKFRYGTGTPEAWKDFQPGRYGVSEPYSGYVRMIHNYGMDEQSSF ALRVETPAPFNLLALVLDVEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90929; Mature: 90798
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKQVLQRLSFTAGELTPWLAGRADLDPVSRGASRLINFLVSPFGGLRRRPGTRLVARAG CHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHC CREGMVRLVSFKYSTGVQFMLEVGRGYVRYFKNGALLTDTEGGVLETLTPWKTDEQVSNL HHHHHEEEEEEECCCCHHHHHHHCCHHHHHHCCCCEEEECCCCEEECCCCCCCHHHHHHH RMQQLNDVIYCVEPSTPPMTLARYADDDWRLEALEFSGIPYESSLLNAVRLECRMVREGG HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC VNRLLATADDDVFTPEMEGKEFLRITRKYGETVAEGNQMPFYHLTTLSRDLYKGETFSMN CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCEECC REDGWRQAYTCIRDFSRESDYQEGVDRPERYTAFFEKGADASTRIYVNGAWTLETTGTWD CCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCC AEWEICRGYPDGSNYLPNRPELVWHSVKSFQQREGFRNNFTLSGNEEEMSYYKIRLMAYK CCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEEEEE DGSSAGTPVFRASAGSFNHEVVVEEYVSPRSAYLASALHLSYHTLSDCDTNDWSFGAFGV CCCCCCCCEEEECCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEC RNGYPCTVEFHQGRLWFGGTPGQPQTLWASRVDDFSAFTPGIPADSPMILTMAASQQNRI CCCCEEEEEEECCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHH SWIASLRGLMIGTSEGEWRLSATNSEGLNASNAGFERHSGVGSASLDALSVENSLLFVQQ HHHHHHCCEEEECCCCCEEEEECCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCEEEEEC GGMKVRELFYSLEADGYQTRDVSLLSDHLLGEGIVDWTVQRSTAFHVWCVLGDGSAVCMT CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCEEEEE LNREQNVVAWHAHRLEHGRILSVASLRGSRNTPDEEVWFAVARGEGEEACITVECMADGN ECCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCHHEEEEEECCCCCCEEEEEEEECCCC ACLDACTEAVVKGETLSGLSHLAGCGAFLVGGDGACMDISVDGAGNAACPGRGDGETVSV HHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEE GLAAPAEVRTMPLETLETLGCFKKQLGARVLLHESTLKFRYGTGTPEAWKDFQPGRYGVS EECCCCHHEECCHHHHHHHHHHHHHHCCEEEEEECEEEEEECCCCCHHHHCCCCCCCCCC EPYSGYVRMIHNYGMDEQSSFALRVETPAPFNLLALVLDVEL CCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHEEEEEEEECC >Mature Secondary Structure AKQVLQRLSFTAGELTPWLAGRADLDPVSRGASRLINFLVSPFGGLRRRPGTRLVARAG HHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHC CREGMVRLVSFKYSTGVQFMLEVGRGYVRYFKNGALLTDTEGGVLETLTPWKTDEQVSNL HHHHHEEEEEEECCCCHHHHHHHCCHHHHHHCCCCEEEECCCCEEECCCCCCCHHHHHHH RMQQLNDVIYCVEPSTPPMTLARYADDDWRLEALEFSGIPYESSLLNAVRLECRMVREGG HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC VNRLLATADDDVFTPEMEGKEFLRITRKYGETVAEGNQMPFYHLTTLSRDLYKGETFSMN CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCEECC REDGWRQAYTCIRDFSRESDYQEGVDRPERYTAFFEKGADASTRIYVNGAWTLETTGTWD CCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCC AEWEICRGYPDGSNYLPNRPELVWHSVKSFQQREGFRNNFTLSGNEEEMSYYKIRLMAYK CCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEEEEEE DGSSAGTPVFRASAGSFNHEVVVEEYVSPRSAYLASALHLSYHTLSDCDTNDWSFGAFGV CCCCCCCCEEEECCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEC RNGYPCTVEFHQGRLWFGGTPGQPQTLWASRVDDFSAFTPGIPADSPMILTMAASQQNRI CCCCEEEEEEECCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHH SWIASLRGLMIGTSEGEWRLSATNSEGLNASNAGFERHSGVGSASLDALSVENSLLFVQQ HHHHHHCCEEEECCCCCEEEEECCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCEEEEEC GGMKVRELFYSLEADGYQTRDVSLLSDHLLGEGIVDWTVQRSTAFHVWCVLGDGSAVCMT CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCEEEEE LNREQNVVAWHAHRLEHGRILSVASLRGSRNTPDEEVWFAVARGEGEEACITVECMADGN ECCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCHHEEEEEECCCCCCEEEEEEEECCCC ACLDACTEAVVKGETLSGLSHLAGCGAFLVGGDGACMDISVDGAGNAACPGRGDGETVSV HHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEE GLAAPAEVRTMPLETLETLGCFKKQLGARVLLHESTLKFRYGTGTPEAWKDFQPGRYGVS EECCCCHHEECCHHHHHHHHHHHHHHCCEEEEEECEEEEEECCCCCHHHHCCCCCCCCCC EPYSGYVRMIHNYGMDEQSSFALRVETPAPFNLLALVLDVEL CCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA