Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736293
Identifier: 187736293
GI number: 187736293
Start: 2193005
End: 2193772
Strand: Direct
Name: 187736293
Synonym: Amuc_1806
Alternate gene names: NA
Gene position: 2193005-2193772 (Clockwise)
Preceding gene: 187736292
Following gene: 187736294
Centisome position: 82.32
GC content: 51.69
Gene sequence:
>768_bases ATGGCGCAGGAAAAGATAGTACAGACGGCGGGACGCACTCAGTTAGGAGAGTTTGCTCCCAAATTTGCGGAACTTAACGA TGATGTCCTTTTCGGTGAAGTATGGAGCCGGACTGACAAGCTCGGTCTGCGTGATCGCAGTTTGGTAACCATCACCTCCC TCATTAGTCAGGGCATTACCGACAATTCGCTCGTTTTCCATCTTCAGTCGGCAAAGAAGAATGGAGTTACCCGTACCGAG ATTGCAGAAATCATCACCCACATCGGTTTTTATGCCGGTTGGCCGAAAGCATGGGCGGCATTTAATCTGGCCAAAGACGT ATGGGCGGAAGATGCGGCTGGCGAAGATGCCAAAGCCGCTTTCCAACGCGAGATGATTTTCCCTTTAGGCGAGCCGAATA CGGCATATGCCAAGTATTTCACAGGCAACAGTTATCTTGCACCCGTTTCACGCGAACAGGTGAATATCTCCAATGTAACT TTTGAACCCCGTTGCCGCAATAACTGGCATATTCACAAAGCGACGAAAGGCGGCGGGCAGATGCTTATCGGTGTGGCCGG ACGCGGCTGGTATCAGGAAGAAGGAAAGCCTGCTGTGGAAATTCTTCCTGGCACAATCATCCATATTCCCGCCAACGTGA AGCACTGGCACGGGGCTGCCTCCGACAGCTGGTTCTCCCACTTGGCTATTGAGGTTCCCGGTGAGAATGCATCCAGTGAA TGGCTTGAGCCGGTAACGGATGAAGAGTATGCCAAGGCCGTGAAATAA
Upstream 100 bases:
>100_bases CCACTGAATCCTTCAAACAGTATTACTAATATTATTAAATAATACAATAATGAATAAGATTATTTTATTTCTTTCAATTA GTTTTTTCATAACAAATGCT
Downstream 100 bases:
>100_bases TGTGGATACTTCCATGTGAAACAATTATAGTGCAATCTGTTGTGTTGGTAATGTAACTGTTTGATACAAATGTAATTAAG AATTTGTTAGATCTGTCGCT
Product: Carboxymuconolactone decarboxylase
Products: NA
Alternate protein names: Cupin 2 Conserved Barrel Domain Protein; Cupin 2 Domain-Containing Protein; 4-Carboxymuconolactone Decarboxylase; Carboxymuconolactone Decarboxylase Family Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin Domain Protein; Transcriptional Regulator; Double-Stranded Beta-Helix-Like Protein; Cupin 2 Barrel; Cupin Family Protein; Gamma-Carboxymuconolactone Decarboxylase Subunit; 4-Carboxymuconolactone Decarboxylase Protein; Cupin 2 Barrel Domain-Containing Protein; Cupin Region; Cupin Domain-Containing Protein; RmlC-Type Cupin; Carboxymuconolactone Decarboxylase Protein; Exported RmlC-Type Cupin; Gamma-Carboxymuconolactone Decarboxylase; Decarboxylase; Conserved Protein; LOW QUALITY PROTEIN Cupin Domain-Containing Protein; ABC-2 Type Transporter; LOW QUALITY PROTEIN Carboxymuconolactone Decarboxylase; Double-Stranded Beta-Helix Protein; Secreted Protein
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MAQEKIVQTAGRTQLGEFAPKFAELNDDVLFGEVWSRTDKLGLRDRSLVTITSLISQGITDNSLVFHLQSAKKNGVTRTE IAEIITHIGFYAGWPKAWAAFNLAKDVWAEDAAGEDAKAAFQREMIFPLGEPNTAYAKYFTGNSYLAPVSREQVNISNVT FEPRCRNNWHIHKATKGGGQMLIGVAGRGWYQEEGKPAVEILPGTIIHIPANVKHWHGAASDSWFSHLAIEVPGENASSE WLEPVTDEEYAKAVK
Sequences:
>Translated_255_residues MAQEKIVQTAGRTQLGEFAPKFAELNDDVLFGEVWSRTDKLGLRDRSLVTITSLISQGITDNSLVFHLQSAKKNGVTRTE IAEIITHIGFYAGWPKAWAAFNLAKDVWAEDAAGEDAKAAFQREMIFPLGEPNTAYAKYFTGNSYLAPVSREQVNISNVT FEPRCRNNWHIHKATKGGGQMLIGVAGRGWYQEEGKPAVEILPGTIIHIPANVKHWHGAASDSWFSHLAIEVPGENASSE WLEPVTDEEYAKAVK >Mature_254_residues AQEKIVQTAGRTQLGEFAPKFAELNDDVLFGEVWSRTDKLGLRDRSLVTITSLISQGITDNSLVFHLQSAKKNGVTRTEI AEIITHIGFYAGWPKAWAAFNLAKDVWAEDAAGEDAKAAFQREMIFPLGEPNTAYAKYFTGNSYLAPVSREQVNISNVTF EPRCRNNWHIHKATKGGGQMLIGVAGRGWYQEEGKPAVEILPGTIIHIPANVKHWHGAASDSWFSHLAIEVPGENASSEW LEPVTDEEYAKAVK
Specific function: Unknown
COG id: COG0599
COG function: function code S; Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28210; Mature: 28079
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQEKIVQTAGRTQLGEFAPKFAELNDDVLFGEVWSRTDKLGLRDRSLVTITSLISQGIT CCHHHHHHHCCCCHHHHHCHHHHCCCCCEEEHHHHCCHHHCCCCCCHHHHHHHHHHCCCC DNSLVFHLQSAKKNGVTRTEIAEIITHIGFYAGWPKAWAAFNLAKDVWAEDAAGEDAKAA CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHH FQREMIFPLGEPNTAYAKYFTGNSYLAPVSREQVNISNVTFEPRCRNNWHIHKATKGGGQ HHHHHCCCCCCCCCEEEEEEECCCEECCCCCCEEEECCEEECCCCCCCCEEEEECCCCCE MLIGVAGRGWYQEEGKPAVEILPGTIIHIPANVKHWHGAASDSWFSHLAIEVPGENASSE EEEEECCCCEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHH WLEPVTDEEYAKAVK HCCCCCCHHHHHHCC >Mature Secondary Structure AQEKIVQTAGRTQLGEFAPKFAELNDDVLFGEVWSRTDKLGLRDRSLVTITSLISQGIT CHHHHHHHCCCCHHHHHCHHHHCCCCCEEEHHHHCCHHHCCCCCCHHHHHHHHHHCCCC DNSLVFHLQSAKKNGVTRTEIAEIITHIGFYAGWPKAWAAFNLAKDVWAEDAAGEDAKAA CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHH FQREMIFPLGEPNTAYAKYFTGNSYLAPVSREQVNISNVTFEPRCRNNWHIHKATKGGGQ HHHHHCCCCCCCCCEEEEEEECCCEECCCCCCEEEECCEEECCCCCCCCEEEEECCCCCE MLIGVAGRGWYQEEGKPAVEILPGTIIHIPANVKHWHGAASDSWFSHLAIEVPGENASSE EEEEECCCCEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHH WLEPVTDEEYAKAVK HCCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA