Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is gatA
Identifier: 187736269
GI number: 187736269
Start: 2170400
End: 2171812
Strand: Reverse
Name: gatA
Synonym: Amuc_1782
Alternate gene names: 187736269
Gene position: 2171812-2170400 (Counterclockwise)
Preceding gene: 187736270
Following gene: 187736268
Centisome position: 81.52
GC content: 62.77
Gene sequence:
>1413_bases ATGTCAAAAATTCAAGGCACCCTGGCCCAGTGGCGTGACCGCCTGCGCCGCAAGGAACTCTCCCCTGCCGAACTGGTCAA CCTGACGGCGGACGCCATTGAGGCGGACCGGACAACCAACGCCTACATCTCCTTTGACCGTGAAGCAGCCCTCCACGCCG CGGCCGGAGCGGATATTTCCAGCCCCCTGGCTGGCATCCCCATCGCCGTGAAGGACAATATTAATGTCCTGGGCCAGCCG ACGCGCTGCGCCTCCCGCCTTCTTTCCCCTTATGTCGCTCCTTATGACGCCACCTCCATCCGCCTGCTGAAGGAGGCGGG CGGCATCCCGCTGGGCCGCACGAACATGGATGAATTCGCCATGGGTGCCAGCGGAGAAAACTCTGCTTACGGCATCACGC GCAACCCGGAAGCCCCGGACCGCATTCCCGGAGGCTCCTCCAGCGGCTCTGCCGCCGCCGTCGCATCCGCTACCGCCATT GCCGCACTCGGTTCCGACACGGGCGGCTCCATCCGGCAGCCGGCCGGGCACTGCGGCATCGTGGGCCTCAAGCCTACCTA CGGGCGCGTTTCCCGCTACGGACTGGTAGCCTTTGCCTCTTCCCTGGACCAGATCGGCCCCATGACCCGGACAGTGGAAG ACGCCGCCATCCTGCTCCAGGCCATCTCCGGACACGACCGTAAAGACTCCACATCCGCAAACTGCCCCGTGCCGGACTTT GAAGCTGCGCTGGGCCGTGACGTCAAAGGGCTAAAAGTGGGCATCCCTTCGGAATACTTTACCTCCGGCAACCATCCGGG CATTTCCGAGGCAGTGCAAAACACCGTCAAACAGCTGGAAAGCCTGGGAGCGGAGCTGGTGGAAGTCAACCTGCCCCACG CGGATGCCGTCGTCGCCGCCTACTATATCATCGCCTGCGCGGAAGCGTCTTCCAACCTCTCCCGGTTTGACGGCGTGCGC TACGGAAAGAGGGCGGAAGACGCCGCCGGACTGGTGGAACTCTTCTCACGCACCCGTGAAGAGGGATTCGGGCCGGAAGT CAAGCGCCGCATCATCCTGGGCACCTACGTGCTCAGCTCCGGTTACTATGACGCTTACTACTCCCGCGCTCAAAAAGTCC GCTCCCTGGTCGCCAGAGATTTCGCGGAAGCCTTCTCCAGGGTGGATATCATCGTAGGCCCCACCTCGCCCGCTCCCGCT CCCAAAATCGGAGATTCCGCGCTGGATCACCTCCAGACCTATCTGGCGGACATCTACACGATCCCCGCCAACCTGGCCGG CCTCCCCGCCATGTCCATTCCCTGCGGAACCGTCAGGGAAAGCGGCATGGAACTTCCCGTGGGCTTTCAGATGATGGCTC CCCATTTCCGGGAAGACCTCCTGTTGAAAACCGGATTTGCCCTTGGGAAATAA
Upstream 100 bases:
>100_bases GTCCCAGGGGCAATTCCGCACGCCCAAGGTGGTGGAATCCGCCTGATCCTCCCGCTTCCTTTTCCCTTCACCTTTCAACC GTCTTTACCCTTTCCTTCTC
Downstream 100 bases:
>100_bases TAGGATTTTTTCAACGTAAGTGCCCGGCATACTGTCTCACCCGCTATCAGAATCATGGACACCCGAGAATTCAACGAAAT TATCGCCGCGAACTCATCGT
Product: glutamyl-tRNA(Gln) amidotransferase, A subunit
Products: NA
Alternate protein names: Glu-ADT subunit A
Number of amino acids: Translated: 470; Mature: 469
Protein sequence:
>470_residues MSKIQGTLAQWRDRLRRKELSPAELVNLTADAIEADRTTNAYISFDREAALHAAAGADISSPLAGIPIAVKDNINVLGQP TRCASRLLSPYVAPYDATSIRLLKEAGGIPLGRTNMDEFAMGASGENSAYGITRNPEAPDRIPGGSSSGSAAAVASATAI AALGSDTGGSIRQPAGHCGIVGLKPTYGRVSRYGLVAFASSLDQIGPMTRTVEDAAILLQAISGHDRKDSTSANCPVPDF EAALGRDVKGLKVGIPSEYFTSGNHPGISEAVQNTVKQLESLGAELVEVNLPHADAVVAAYYIIACAEASSNLSRFDGVR YGKRAEDAAGLVELFSRTREEGFGPEVKRRIILGTYVLSSGYYDAYYSRAQKVRSLVARDFAEAFSRVDIIVGPTSPAPA PKIGDSALDHLQTYLADIYTIPANLAGLPAMSIPCGTVRESGMELPVGFQMMAPHFREDLLLKTGFALGK
Sequences:
>Translated_470_residues MSKIQGTLAQWRDRLRRKELSPAELVNLTADAIEADRTTNAYISFDREAALHAAAGADISSPLAGIPIAVKDNINVLGQP TRCASRLLSPYVAPYDATSIRLLKEAGGIPLGRTNMDEFAMGASGENSAYGITRNPEAPDRIPGGSSSGSAAAVASATAI AALGSDTGGSIRQPAGHCGIVGLKPTYGRVSRYGLVAFASSLDQIGPMTRTVEDAAILLQAISGHDRKDSTSANCPVPDF EAALGRDVKGLKVGIPSEYFTSGNHPGISEAVQNTVKQLESLGAELVEVNLPHADAVVAAYYIIACAEASSNLSRFDGVR YGKRAEDAAGLVELFSRTREEGFGPEVKRRIILGTYVLSSGYYDAYYSRAQKVRSLVARDFAEAFSRVDIIVGPTSPAPA PKIGDSALDHLQTYLADIYTIPANLAGLPAMSIPCGTVRESGMELPVGFQMMAPHFREDLLLKTGFALGK >Mature_469_residues SKIQGTLAQWRDRLRRKELSPAELVNLTADAIEADRTTNAYISFDREAALHAAAGADISSPLAGIPIAVKDNINVLGQPT RCASRLLSPYVAPYDATSIRLLKEAGGIPLGRTNMDEFAMGASGENSAYGITRNPEAPDRIPGGSSSGSAAAVASATAIA ALGSDTGGSIRQPAGHCGIVGLKPTYGRVSRYGLVAFASSLDQIGPMTRTVEDAAILLQAISGHDRKDSTSANCPVPDFE AALGRDVKGLKVGIPSEYFTSGNHPGISEAVQNTVKQLESLGAELVEVNLPHADAVVAAYYIIACAEASSNLSRFDGVRY GKRAEDAAGLVELFSRTREEGFGPEVKRRIILGTYVLSSGYYDAYYSRAQKVRSLVARDFAEAFSRVDIIVGPTSPAPAP KIGDSALDHLQTYLADIYTIPANLAGLPAMSIPCGTVRESGMELPVGFQMMAPHFREDLLLKTGFALGK
Specific function: Furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu- tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activa
COG id: COG0154
COG function: function code J; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amidase family
Homologues:
Organism=Homo sapiens, GI222831590, Length=484, Percent_Identity=37.8099173553719, Blast_Score=306, Evalue=4e-83, Organism=Homo sapiens, GI195972892, Length=480, Percent_Identity=25, Blast_Score=112, Evalue=6e-25, Organism=Homo sapiens, GI166795287, Length=298, Percent_Identity=32.8859060402685, Blast_Score=98, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17543272, Length=432, Percent_Identity=38.1944444444444, Blast_Score=255, Evalue=3e-68, Organism=Caenorhabditis elegans, GI71990152, Length=323, Percent_Identity=29.4117647058824, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17538252, Length=509, Percent_Identity=24.75442043222, Blast_Score=109, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17556264, Length=274, Percent_Identity=29.9270072992701, Blast_Score=104, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17537465, Length=232, Percent_Identity=32.3275862068966, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17538254, Length=301, Percent_Identity=26.9102990033223, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17556276, Length=283, Percent_Identity=30.0353356890459, Blast_Score=83, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17556278, Length=276, Percent_Identity=30.4347826086957, Blast_Score=82, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6323950, Length=416, Percent_Identity=36.2980769230769, Blast_Score=231, Evalue=1e-61, Organism=Saccharomyces cerevisiae, GI6319685, Length=443, Percent_Identity=29.3453724604966, Blast_Score=112, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6320448, Length=467, Percent_Identity=23.982869379015, Blast_Score=79, Evalue=1e-15, Organism=Drosophila melanogaster, GI24648113, Length=470, Percent_Identity=40.8510638297872, Blast_Score=303, Evalue=1e-82, Organism=Drosophila melanogaster, GI24644968, Length=502, Percent_Identity=27.4900398406374, Blast_Score=128, Evalue=9e-30, Organism=Drosophila melanogaster, GI24652985, Length=479, Percent_Identity=27.1398747390397, Blast_Score=119, Evalue=6e-27, Organism=Drosophila melanogaster, GI19922090, Length=479, Percent_Identity=27.1398747390397, Blast_Score=119, Evalue=6e-27, Organism=Drosophila melanogaster, GI24652981, Length=479, Percent_Identity=27.1398747390397, Blast_Score=119, Evalue=6e-27, Organism=Drosophila melanogaster, GI24652983, Length=479, Percent_Identity=27.1398747390397, Blast_Score=119, Evalue=6e-27, Organism=Drosophila melanogaster, GI161078093, Length=507, Percent_Identity=26.8244575936884, Blast_Score=105, Evalue=7e-23, Organism=Drosophila melanogaster, GI45550774, Length=198, Percent_Identity=35.3535353535354, Blast_Score=100, Evalue=4e-21, Organism=Drosophila melanogaster, GI24648435, Length=198, Percent_Identity=35.3535353535354, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24648437, Length=198, Percent_Identity=35.3535353535354, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24648441, Length=168, Percent_Identity=39.2857142857143, Blast_Score=99, Evalue=8e-21, Organism=Drosophila melanogaster, GI24648439, Length=168, Percent_Identity=39.2857142857143, Blast_Score=99, Evalue=8e-21, Organism=Drosophila melanogaster, GI21356731, Length=172, Percent_Identity=34.8837209302326, Blast_Score=92, Evalue=1e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GATA_AKKM8 (B2UMP4)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001878381.1 - ProteinModelPortal: B2UMP4 - SMR: B2UMP4 - GeneID: 6275761 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_1782 - HOGENOM: HBG481888 - OMA: RWGLIAF - GO: GO:0006412 - HAMAP: MF_00120 - InterPro: IPR000120 - InterPro: IPR020556 - InterPro: IPR004412 - Gene3D: G3DSA:3.90.1300.10 - PANTHER: PTHR11895 - TIGRFAMs: TIGR00132
Pfam domain/function: PF01425 Amidase; SSF75304 Amidase_sig_enz
EC number: 6.3.5.-
Molecular weight: Translated: 49650; Mature: 49518
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: PS00571 AMIDASES
Important sites: ACT_SITE 71-71 ACT_SITE 146-146 ACT_SITE 170-170
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIQGTLAQWRDRLRRKELSPAELVNLTADAIEADRTTNAYISFDREAALHAAAGADIS CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCC SPLAGIPIAVKDNINVLGQPTRCASRLLSPYVAPYDATSIRLLKEAGGIPLGRTNMDEFA CCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHH MGASGENSAYGITRNPEAPDRIPGGSSSGSAAAVASATAIAALGSDTGGSIRQPAGHCGI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE VGLKPTYGRVSRYGLVAFASSLDQIGPMTRTVEDAAILLQAISGHDRKDSTSANCPVPDF EECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH EAALGRDVKGLKVGIPSEYFTSGNHPGISEAVQNTVKQLESLGAELVEVNLPHADAVVAA HHHHCCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH YYIIACAEASSNLSRFDGVRYGKRAEDAAGLVELFSRTREEGFGPEVKRRIILGTYVLSS HHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC GYYDAYYSRAQKVRSLVARDFAEAFSRVDIIVGPTSPAPAPKIGDSALDHLQTYLADIYT CCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH IPANLAGLPAMSIPCGTVRESGMELPVGFQMMAPHFREDLLLKTGFALGK CCCHHCCCCCCCCCCHHHHHCCCCCCCCHHHHCCHHHHHHHHHHCCCCCC >Mature Secondary Structure SKIQGTLAQWRDRLRRKELSPAELVNLTADAIEADRTTNAYISFDREAALHAAAGADIS CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCC SPLAGIPIAVKDNINVLGQPTRCASRLLSPYVAPYDATSIRLLKEAGGIPLGRTNMDEFA CCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHH MGASGENSAYGITRNPEAPDRIPGGSSSGSAAAVASATAIAALGSDTGGSIRQPAGHCGI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE VGLKPTYGRVSRYGLVAFASSLDQIGPMTRTVEDAAILLQAISGHDRKDSTSANCPVPDF EECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH EAALGRDVKGLKVGIPSEYFTSGNHPGISEAVQNTVKQLESLGAELVEVNLPHADAVVAA HHHHCCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH YYIIACAEASSNLSRFDGVRYGKRAEDAAGLVELFSRTREEGFGPEVKRRIILGTYVLSS HHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC GYYDAYYSRAQKVRSLVARDFAEAFSRVDIIVGPTSPAPAPKIGDSALDHLQTYLADIYT CCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH IPANLAGLPAMSIPCGTVRESGMELPVGFQMMAPHFREDLLLKTGFALGK CCCHHCCCCCCCCCCHHHHHCCCCCCCCHHHHCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA