Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736267
Identifier: 187736267
GI number: 187736267
Start: 2168373
End: 2169263
Strand: Reverse
Name: 187736267
Synonym: Amuc_1780
Alternate gene names: NA
Gene position: 2169263-2168373 (Counterclockwise)
Preceding gene: 187736268
Following gene: 187736266
Centisome position: 81.43
GC content: 57.8
Gene sequence:
>891_bases ATGGATAAAGCCTCAGACATTCTCAAGCGCGTACGCCGCATTGAACTGCGCGCCAGGCATCTGGCCACGGAAAACTTCGC CGGGCAATACCAGTCCGGCTTCCGCGGACAGGGGCTGGACTTTGACGACTTCCGGGAATACATGCCGGGAGATGACCCCC GCTTCATTGACTGGAAGGTAACGGCCAGGATGAACTCCCCTTTTGTCCGCCGTTTCCGGGAGGAACGGGAACAGGCCGTC ATTCTGGCGGTGGACGTCAGCGGCTCCATGCACTACGCCTCCTCCGCGGCCCGCGTCTCCAAACTGGACTATGCGGCGGA AGTAGCGGCAGTGCTCGCCTACAGCGCTGCCCAGAGCGGAGACAAATGCGGCCTCCTTATCTACGGGAACAGCCACTCCC ATTACATCCCCCCGGCCAAGGGAGTCAAGCAGACCCTGCGCATCGTCCGCGAAATCGTAGCCAGTAAAAACGATGGAGCC GACCAGAACATTTCCGATGTAGCCCGGCAACTTGTCCTTTCCCAGAAAAAAGCGGCCATGGTCATCATGATCAGTGACTT TTGGGGTGAGAACAATAAAGCCGCCCTGGGGCAGCTCAACTTCAAGCATGACTTCATCCCCATCCGCATCGCAGACCCGA TGGAACTGCATCTGCCGGATGCCGGACGCGTCATCCTGAAAGATCCGGAAACTGGCAAAAGCATGTTCCTGAACCTTTCC CGTCAGGATGTCCGGGAAACCCACGCCAACGTCGTTCATCTGCACCGCGAGAAATGGACGCAGGATTTCCGCCGCCTGGG CATTGACTTCCTGGACTTGCAGACCACAGACAACTTCATGCCTCCCCTCCGGGCCCTTTTTGCCAGAAGATCCCGTAAAT TTTCACGCTAA
Upstream 100 bases:
>100_bases GACAGCAGGAGGCGGACGCTTCCGCGCCCGCCCTTATCCTTCAGGCCCCAAGGGGCGCCTTGCCGGAACCTGATTGAACC CAAACAGGGAAAATCATTTC
Downstream 100 bases:
>100_bases TCCTCTTCTCTATCAGCCATGCCACCCCCCGCCACCTTTCAGCCCCCCCCCACGGCAATTCCGGAACCGCCGGCGTTTCC CTCCCTGATGGAAACACAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 296; Mature: 296
Protein sequence:
>296_residues MDKASDILKRVRRIELRARHLATENFAGQYQSGFRGQGLDFDDFREYMPGDDPRFIDWKVTARMNSPFVRRFREEREQAV ILAVDVSGSMHYASSAARVSKLDYAAEVAAVLAYSAAQSGDKCGLLIYGNSHSHYIPPAKGVKQTLRIVREIVASKNDGA DQNISDVARQLVLSQKKAAMVIMISDFWGENNKAALGQLNFKHDFIPIRIADPMELHLPDAGRVILKDPETGKSMFLNLS RQDVRETHANVVHLHREKWTQDFRRLGIDFLDLQTTDNFMPPLRALFARRSRKFSR
Sequences:
>Translated_296_residues MDKASDILKRVRRIELRARHLATENFAGQYQSGFRGQGLDFDDFREYMPGDDPRFIDWKVTARMNSPFVRRFREEREQAV ILAVDVSGSMHYASSAARVSKLDYAAEVAAVLAYSAAQSGDKCGLLIYGNSHSHYIPPAKGVKQTLRIVREIVASKNDGA DQNISDVARQLVLSQKKAAMVIMISDFWGENNKAALGQLNFKHDFIPIRIADPMELHLPDAGRVILKDPETGKSMFLNLS RQDVRETHANVVHLHREKWTQDFRRLGIDFLDLQTTDNFMPPLRALFARRSRKFSR >Mature_296_residues MDKASDILKRVRRIELRARHLATENFAGQYQSGFRGQGLDFDDFREYMPGDDPRFIDWKVTARMNSPFVRRFREEREQAV ILAVDVSGSMHYASSAARVSKLDYAAEVAAVLAYSAAQSGDKCGLLIYGNSHSHYIPPAKGVKQTLRIVREIVASKNDGA DQNISDVARQLVLSQKKAAMVIMISDFWGENNKAALGQLNFKHDFIPIRIADPMELHLPDAGRVILKDPETGKSMFLNLS RQDVRETHANVVHLHREKWTQDFRRLGIDFLDLQTTDNFMPPLRALFARRSRKFSR
Specific function: Unknown
COG id: COG1721
COG function: function code R; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.avium MAV169 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002881 - InterPro: IPR002035 [H]
Pfam domain/function: PF01882 DUF58 [H]
EC number: NA
Molecular weight: Translated: 33721; Mature: 33721
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKASDILKRVRRIELRARHLATENFAGQYQSGFRGQGLDFDDFREYMPGDDPRFIDWKV CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEEE TARMNSPFVRRFREEREQAVILAVDVSGSMHYASSAARVSKLDYAAEVAAVLAYSAAQSG EEECCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DKCGLLIYGNSHSHYIPPAKGVKQTLRIVREIVASKNDGADQNISDVARQLVLSQKKAAM CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEE VIMISDFWGENNKAALGQLNFKHDFIPIRIADPMELHLPDAGRVILKDPETGKSMFLNLS EEEEECCCCCCCCEEEEECCCCCCEEEEEECCCCEEECCCCCEEEEECCCCCCHHEEECC RQDVRETHANVVHLHREKWTQDFRRLGIDFLDLQTTDNFMPPLRALFARRSRKFSR HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure MDKASDILKRVRRIELRARHLATENFAGQYQSGFRGQGLDFDDFREYMPGDDPRFIDWKV CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEEE TARMNSPFVRRFREEREQAVILAVDVSGSMHYASSAARVSKLDYAAEVAAVLAYSAAQSG EEECCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DKCGLLIYGNSHSHYIPPAKGVKQTLRIVREIVASKNDGADQNISDVARQLVLSQKKAAM CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEE VIMISDFWGENNKAALGQLNFKHDFIPIRIADPMELHLPDAGRVILKDPETGKSMFLNLS EEEEECCCCCCCCEEEEECCCCCCEEEEEECCCCEEECCCCCEEEEECCCCCCHHEEECC RQDVRETHANVVHLHREKWTQDFRRLGIDFLDLQTTDNFMPPLRALFARRSRKFSR HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]