Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yrkO [H]
Identifier: 187736223
GI number: 187736223
Start: 2117493
End: 2118725
Strand: Reverse
Name: yrkO [H]
Synonym: Amuc_1736
Alternate gene names: 187736223
Gene position: 2118725-2117493 (Counterclockwise)
Preceding gene: 187736224
Following gene: 187736218
Centisome position: 79.53
GC content: 64.56
Gene sequence:
>1233_bases ATGACCGCCCGGACTCCCGCCGGAACGCCGCCCCCGGCCGCGCGCATCACCATTCTGGATATCCTCCGGGCCCTGGCCCT GCTGGGCATCGTCATCGTCCACACGCACGACCACTTCAACCTCTATCTTCCCATGCCCCCGGCGGAAGGATGGCAGGCTG CGGCCAACAGTGCGGCGGACTGGGCCTATGAACATCTCTTTGTCAGCAAATCCTTCCTGCTCTTCTCCTTCCTGTTTGGC CTCAGCTTCTTCATCCAGCTGGACAGGCGGGAGCAGCAAGGAATCGACTTCCGGAAACGCTTCATGTGGCGCCTGACGCT CCTGTTCCTGCTGGGGCTGGCGCATACCCTGTTCTATGACGGGGACATCCTCACCCTCTTCGGCATTCTGGGCTTTGCCC TGGTCATGCTCTACAAATGCGGGACACCCCTGCTCATCACCCTCTGCGCCCTGTGCCTGCTCCAGCCGGTCATGCTCATG GACCTGCTGAACCATGCCGGGCTGGCGGACTGGTGGCCCCACTCCTCCGGCTGGTTCCATACGGCCTCCCCGGCTGCGAG CCCCACGCGGGAATTCCTGTACGCCCACGGCAGCTGGGGCCAGGCGGCCCTGTGGAACCTGACGCAGGGACAGGCGGGCA AATGGCATTTCTTCCTGCTCAGCGGCCGCCTCTGGCAAACGCTGGGCCTCTTCATCCTGGGCATGCTGGCGGGCAGATGG CGCACCTTTGAAGACGCGCCCGACAAACGCCGCCTGTTCCTGCGGATGCTGGGAATCTCCGGAACCCTGTTCCTGGCTCT GCTGGCGGCGCGCCTGTTACTCCCCTCCCGGCTGGACTCCGCGCTGGAAGTGGACGCAGGACACCTTCTGCACCAATGGG AAAACCTGGCCTATACCGCGGCTTTCGTCTCCGCCGCCGTCCTGCTGTTCACCCATCCCGGCCTCCCCCTGCCTGCCAGA CTGCTCAGCAGCGCCGGCAAATGCACGCTGACCTGCTACATCACCCAGACGCTGGTCTTCACCTTCCTCTTCTTCGGGTG GGGGCTGGGCCTGGCCCAGGACATGGGGCCGTGGCCATGCCTGTGCGCAGCCGTTGCCGTCTTCCTCCTCCAGGCCTGGG CCTGCCGCCTCTGGCTAAGCCATTTCCTGTACGGCCCCTTGGAATGGCTCTGGCGCACCGCCACCATGTGCCGCATGCAG CCCTTCCGCAAGCGGATTTCCCAGAAAAATTGA
Upstream 100 bases:
>100_bases GATCCCTGCGGGGAACTGGCCCCCATTCTGGAAGCGGACCAATGGGCCAGGAGGCGCGCGGCGGAGCTGCTCCCATCCTT TTCCCGCCCCTGCTGACGCC
Downstream 100 bases:
>100_bases GATATTACTCTCCTTCTTCCTGTTCAATCCCGGTTTCTCCGAACGTAGGAGGAATCAAACGCACAGCCTCCTGCGTCCGG TCCGGAAAGAAACCATTCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 410; Mature: 409
Protein sequence:
>410_residues MTARTPAGTPPPAARITILDILRALALLGIVIVHTHDHFNLYLPMPPAEGWQAAANSAADWAYEHLFVSKSFLLFSFLFG LSFFIQLDRREQQGIDFRKRFMWRLTLLFLLGLAHTLFYDGDILTLFGILGFALVMLYKCGTPLLITLCALCLLQPVMLM DLLNHAGLADWWPHSSGWFHTASPAASPTREFLYAHGSWGQAALWNLTQGQAGKWHFFLLSGRLWQTLGLFILGMLAGRW RTFEDAPDKRRLFLRMLGISGTLFLALLAARLLLPSRLDSALEVDAGHLLHQWENLAYTAAFVSAAVLLFTHPGLPLPAR LLSSAGKCTLTCYITQTLVFTFLFFGWGLGLAQDMGPWPCLCAAVAVFLLQAWACRLWLSHFLYGPLEWLWRTATMCRMQ PFRKRISQKN
Sequences:
>Translated_410_residues MTARTPAGTPPPAARITILDILRALALLGIVIVHTHDHFNLYLPMPPAEGWQAAANSAADWAYEHLFVSKSFLLFSFLFG LSFFIQLDRREQQGIDFRKRFMWRLTLLFLLGLAHTLFYDGDILTLFGILGFALVMLYKCGTPLLITLCALCLLQPVMLM DLLNHAGLADWWPHSSGWFHTASPAASPTREFLYAHGSWGQAALWNLTQGQAGKWHFFLLSGRLWQTLGLFILGMLAGRW RTFEDAPDKRRLFLRMLGISGTLFLALLAARLLLPSRLDSALEVDAGHLLHQWENLAYTAAFVSAAVLLFTHPGLPLPAR LLSSAGKCTLTCYITQTLVFTFLFFGWGLGLAQDMGPWPCLCAAVAVFLLQAWACRLWLSHFLYGPLEWLWRTATMCRMQ PFRKRISQKN >Mature_409_residues TARTPAGTPPPAARITILDILRALALLGIVIVHTHDHFNLYLPMPPAEGWQAAANSAADWAYEHLFVSKSFLLFSFLFGL SFFIQLDRREQQGIDFRKRFMWRLTLLFLLGLAHTLFYDGDILTLFGILGFALVMLYKCGTPLLITLCALCLLQPVMLMD LLNHAGLADWWPHSSGWFHTASPAASPTREFLYAHGSWGQAALWNLTQGQAGKWHFFLLSGRLWQTLGLFILGMLAGRWR TFEDAPDKRRLFLRMLGISGTLFLALLAARLLLPSRLDSALEVDAGHLLHQWENLAYTAAFVSAAVLLFTHPGLPLPARL LSSAGKCTLTCYITQTLVFTFLFFGWGLGLAQDMGPWPCLCAAVAVFLLQAWACRLWLSHFLYGPLEWLWRTATMCRMQP FRKRISQKN
Specific function: Involved in transport (Potential) [H]
COG id: COG2311
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788475, Length=403, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007349 [H]
Pfam domain/function: PF04235 DUF418 [H]
EC number: NA
Molecular weight: Translated: 46215; Mature: 46084
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTARTPAGTPPPAARITILDILRALALLGIVIVHTHDHFNLYLPMPPAEGWQAAANSAAD CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCHHHHHCCHHH WAYEHLFVSKSFLLFSFLFGLSFFIQLDRREQQGIDFRKRFMWRLTLLFLLGLAHTLFYD HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC GDILTLFGILGFALVMLYKCGTPLLITLCALCLLQPVMLMDLLNHAGLADWWPHSSGWFH CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE TASPAASPTREFLYAHGSWGQAALWNLTQGQAGKWHFFLLSGRLWQTLGLFILGMLAGRW CCCCCCCCHHHHHEECCCCCCHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCC RTFEDAPDKRRLFLRMLGISGTLFLALLAARLLLPSRLDSALEVDAGHLLHQWENLAYTA CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH AFVSAAVLLFTHPGLPLPARLLSSAGKCTLTCYITQTLVFTFLFFGWGLGLAQDMGPWPC HHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHH LCAAVAVFLLQAWACRLWLSHFLYGPLEWLWRTATMCRMQPFRKRISQKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TARTPAGTPPPAARITILDILRALALLGIVIVHTHDHFNLYLPMPPAEGWQAAANSAAD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCHHHHHCCHHH WAYEHLFVSKSFLLFSFLFGLSFFIQLDRREQQGIDFRKRFMWRLTLLFLLGLAHTLFYD HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC GDILTLFGILGFALVMLYKCGTPLLITLCALCLLQPVMLMDLLNHAGLADWWPHSSGWFH CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE TASPAASPTREFLYAHGSWGQAALWNLTQGQAGKWHFFLLSGRLWQTLGLFILGMLAGRW CCCCCCCCHHHHHEECCCCCCHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCC RTFEDAPDKRRLFLRMLGISGTLFLALLAARLLLPSRLDSALEVDAGHLLHQWENLAYTA CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH AFVSAAVLLFTHPGLPLPARLLSSAGKCTLTCYITQTLVFTFLFFGWGLGLAQDMGPWPC HHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHH LCAAVAVFLLQAWACRLWLSHFLYGPLEWLWRTATMCRMQPFRKRISQKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]