Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is yrkO [H]

Identifier: 187736223

GI number: 187736223

Start: 2117493

End: 2118725

Strand: Reverse

Name: yrkO [H]

Synonym: Amuc_1736

Alternate gene names: 187736223

Gene position: 2118725-2117493 (Counterclockwise)

Preceding gene: 187736224

Following gene: 187736218

Centisome position: 79.53

GC content: 64.56

Gene sequence:

>1233_bases
ATGACCGCCCGGACTCCCGCCGGAACGCCGCCCCCGGCCGCGCGCATCACCATTCTGGATATCCTCCGGGCCCTGGCCCT
GCTGGGCATCGTCATCGTCCACACGCACGACCACTTCAACCTCTATCTTCCCATGCCCCCGGCGGAAGGATGGCAGGCTG
CGGCCAACAGTGCGGCGGACTGGGCCTATGAACATCTCTTTGTCAGCAAATCCTTCCTGCTCTTCTCCTTCCTGTTTGGC
CTCAGCTTCTTCATCCAGCTGGACAGGCGGGAGCAGCAAGGAATCGACTTCCGGAAACGCTTCATGTGGCGCCTGACGCT
CCTGTTCCTGCTGGGGCTGGCGCATACCCTGTTCTATGACGGGGACATCCTCACCCTCTTCGGCATTCTGGGCTTTGCCC
TGGTCATGCTCTACAAATGCGGGACACCCCTGCTCATCACCCTCTGCGCCCTGTGCCTGCTCCAGCCGGTCATGCTCATG
GACCTGCTGAACCATGCCGGGCTGGCGGACTGGTGGCCCCACTCCTCCGGCTGGTTCCATACGGCCTCCCCGGCTGCGAG
CCCCACGCGGGAATTCCTGTACGCCCACGGCAGCTGGGGCCAGGCGGCCCTGTGGAACCTGACGCAGGGACAGGCGGGCA
AATGGCATTTCTTCCTGCTCAGCGGCCGCCTCTGGCAAACGCTGGGCCTCTTCATCCTGGGCATGCTGGCGGGCAGATGG
CGCACCTTTGAAGACGCGCCCGACAAACGCCGCCTGTTCCTGCGGATGCTGGGAATCTCCGGAACCCTGTTCCTGGCTCT
GCTGGCGGCGCGCCTGTTACTCCCCTCCCGGCTGGACTCCGCGCTGGAAGTGGACGCAGGACACCTTCTGCACCAATGGG
AAAACCTGGCCTATACCGCGGCTTTCGTCTCCGCCGCCGTCCTGCTGTTCACCCATCCCGGCCTCCCCCTGCCTGCCAGA
CTGCTCAGCAGCGCCGGCAAATGCACGCTGACCTGCTACATCACCCAGACGCTGGTCTTCACCTTCCTCTTCTTCGGGTG
GGGGCTGGGCCTGGCCCAGGACATGGGGCCGTGGCCATGCCTGTGCGCAGCCGTTGCCGTCTTCCTCCTCCAGGCCTGGG
CCTGCCGCCTCTGGCTAAGCCATTTCCTGTACGGCCCCTTGGAATGGCTCTGGCGCACCGCCACCATGTGCCGCATGCAG
CCCTTCCGCAAGCGGATTTCCCAGAAAAATTGA

Upstream 100 bases:

>100_bases
GATCCCTGCGGGGAACTGGCCCCCATTCTGGAAGCGGACCAATGGGCCAGGAGGCGCGCGGCGGAGCTGCTCCCATCCTT
TTCCCGCCCCTGCTGACGCC

Downstream 100 bases:

>100_bases
GATATTACTCTCCTTCTTCCTGTTCAATCCCGGTTTCTCCGAACGTAGGAGGAATCAAACGCACAGCCTCCTGCGTCCGG
TCCGGAAAGAAACCATTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MTARTPAGTPPPAARITILDILRALALLGIVIVHTHDHFNLYLPMPPAEGWQAAANSAADWAYEHLFVSKSFLLFSFLFG
LSFFIQLDRREQQGIDFRKRFMWRLTLLFLLGLAHTLFYDGDILTLFGILGFALVMLYKCGTPLLITLCALCLLQPVMLM
DLLNHAGLADWWPHSSGWFHTASPAASPTREFLYAHGSWGQAALWNLTQGQAGKWHFFLLSGRLWQTLGLFILGMLAGRW
RTFEDAPDKRRLFLRMLGISGTLFLALLAARLLLPSRLDSALEVDAGHLLHQWENLAYTAAFVSAAVLLFTHPGLPLPAR
LLSSAGKCTLTCYITQTLVFTFLFFGWGLGLAQDMGPWPCLCAAVAVFLLQAWACRLWLSHFLYGPLEWLWRTATMCRMQ
PFRKRISQKN

Sequences:

>Translated_410_residues
MTARTPAGTPPPAARITILDILRALALLGIVIVHTHDHFNLYLPMPPAEGWQAAANSAADWAYEHLFVSKSFLLFSFLFG
LSFFIQLDRREQQGIDFRKRFMWRLTLLFLLGLAHTLFYDGDILTLFGILGFALVMLYKCGTPLLITLCALCLLQPVMLM
DLLNHAGLADWWPHSSGWFHTASPAASPTREFLYAHGSWGQAALWNLTQGQAGKWHFFLLSGRLWQTLGLFILGMLAGRW
RTFEDAPDKRRLFLRMLGISGTLFLALLAARLLLPSRLDSALEVDAGHLLHQWENLAYTAAFVSAAVLLFTHPGLPLPAR
LLSSAGKCTLTCYITQTLVFTFLFFGWGLGLAQDMGPWPCLCAAVAVFLLQAWACRLWLSHFLYGPLEWLWRTATMCRMQ
PFRKRISQKN
>Mature_409_residues
TARTPAGTPPPAARITILDILRALALLGIVIVHTHDHFNLYLPMPPAEGWQAAANSAADWAYEHLFVSKSFLLFSFLFGL
SFFIQLDRREQQGIDFRKRFMWRLTLLFLLGLAHTLFYDGDILTLFGILGFALVMLYKCGTPLLITLCALCLLQPVMLMD
LLNHAGLADWWPHSSGWFHTASPAASPTREFLYAHGSWGQAALWNLTQGQAGKWHFFLLSGRLWQTLGLFILGMLAGRWR
TFEDAPDKRRLFLRMLGISGTLFLALLAARLLLPSRLDSALEVDAGHLLHQWENLAYTAAFVSAAVLLFTHPGLPLPARL
LSSAGKCTLTCYITQTLVFTFLFFGWGLGLAQDMGPWPCLCAAVAVFLLQAWACRLWLSHFLYGPLEWLWRTATMCRMQP
FRKRISQKN

Specific function: Involved in transport (Potential) [H]

COG id: COG2311

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788475, Length=403, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007349 [H]

Pfam domain/function: PF04235 DUF418 [H]

EC number: NA

Molecular weight: Translated: 46215; Mature: 46084

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARTPAGTPPPAARITILDILRALALLGIVIVHTHDHFNLYLPMPPAEGWQAAANSAAD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCHHHHHCCHHH
WAYEHLFVSKSFLLFSFLFGLSFFIQLDRREQQGIDFRKRFMWRLTLLFLLGLAHTLFYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GDILTLFGILGFALVMLYKCGTPLLITLCALCLLQPVMLMDLLNHAGLADWWPHSSGWFH
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
TASPAASPTREFLYAHGSWGQAALWNLTQGQAGKWHFFLLSGRLWQTLGLFILGMLAGRW
CCCCCCCCHHHHHEECCCCCCHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCC
RTFEDAPDKRRLFLRMLGISGTLFLALLAARLLLPSRLDSALEVDAGHLLHQWENLAYTA
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AFVSAAVLLFTHPGLPLPARLLSSAGKCTLTCYITQTLVFTFLFFGWGLGLAQDMGPWPC
HHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LCAAVAVFLLQAWACRLWLSHFLYGPLEWLWRTATMCRMQPFRKRISQKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TARTPAGTPPPAARITILDILRALALLGIVIVHTHDHFNLYLPMPPAEGWQAAANSAAD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCHHHHHCCHHH
WAYEHLFVSKSFLLFSFLFGLSFFIQLDRREQQGIDFRKRFMWRLTLLFLLGLAHTLFYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GDILTLFGILGFALVMLYKCGTPLLITLCALCLLQPVMLMDLLNHAGLADWWPHSSGWFH
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
TASPAASPTREFLYAHGSWGQAALWNLTQGQAGKWHFFLLSGRLWQTLGLFILGMLAGRW
CCCCCCCCHHHHHEECCCCCCHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCC
RTFEDAPDKRRLFLRMLGISGTLFLALLAARLLLPSRLDSALEVDAGHLLHQWENLAYTA
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AFVSAAVLLFTHPGLPLPARLLSSAGKCTLTCYITQTLVFTFLFFGWGLGLAQDMGPWPC
HHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LCAAVAVFLLQAWACRLWLSHFLYGPLEWLWRTATMCRMQPFRKRISQKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]