Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736192
Identifier: 187736192
GI number: 187736192
Start: 2071161
End: 2071631
Strand: Direct
Name: 187736192
Synonym: Amuc_1705
Alternate gene names: NA
Gene position: 2071161-2071631 (Clockwise)
Preceding gene: 187736178
Following gene: 187736193
Centisome position: 77.74
GC content: 54.56
Gene sequence:
>471_bases ATGCTCTATATGGATAAAATACGTCAACGACTTTCCGACCTTGGTTACGCCATTTACGATGCTCCCGCTCCCGTAGGCTC CTATGTGCAATGCGTACGCACGGGCAACCTGCTTCACCTCTCCGGCGGCATTTCCGTGAACGGGGACGACAAATACTTTG GCAAAGTAGGGCAGGAGCTGACGGTGGAAGAAGGTCAGGCCGCTGCGCGCGCCGCTATTTTGAATCGTCTGGCCGTTATT GTGCAGGTGGTGGGGTCTCTGGAAAAAGTATCCCGAATCGTGGCCGTGAACGGATTTGTGAATGCCGGCCCGGATTTTTA TGACCATCCTAAAGTATTGAATGGCGCATCCGACCTGCTGGTGGAAGCCTTTGGAGAAATTGGCCGCCACAGCCGTACGG CGGTAGGCGTATCCGCCCTGCCGCTCAATGTAGCGGTGGAAATCAGCATGGTGGTGGAAGTTCGTGATTAA
Upstream 100 bases:
>100_bases ATTTTACGTGCAAACAGACCGAAAATTGTTCAAAATGTCATGAAAGGCATCTGGAAATGCAACTATTTCCGGTGTATCCT TTCAACTCAACTTCTGTCAA
Downstream 100 bases:
>100_bases TATTTAAAAACCGGAAGGGATTCGTGCTTGAATCCCGGCGGCATTCCTGTAGAGTGCCGTCCGGTCAATGCCCCCGTGGC GGAATGGTAGACGCTGCAGA
Product: Endoribonuclease L-PSP
Products: NA
Alternate protein names: Translation Initiation Inhibitor; Endoribonuclease L-PSP Family Protein; Translation Initiation Inhibitor YjgF Family; Endoribonuclease L-Psp; Endoribonuclease; Endoribonuclease L-PSP Superfamily; Translation Initiation Inhibitor Protein; Transcriptional Regulator; Transcription Regulator; Endoribonuclease Family Protein; Endoribonuclease L-PSP Family; Translation Initiation Inhibitor Protein YjgF Family; 2-Aminomuconate Deaminase; YjgF-Family Protein; Creatininase; Translation Initiation Inhibitor YjgF; L-PSP Family Endoribonuclease; YjgF Family Translation Initiation Inhibitor; Endoribonuclease-L-PSP Family Protein
Number of amino acids: Translated: 156; Mature: 156
Protein sequence:
>156_residues MLYMDKIRQRLSDLGYAIYDAPAPVGSYVQCVRTGNLLHLSGGISVNGDDKYFGKVGQELTVEEGQAAARAAILNRLAVI VQVVGSLEKVSRIVAVNGFVNAGPDFYDHPKVLNGASDLLVEAFGEIGRHSRTAVGVSALPLNVAVEISMVVEVRD
Sequences:
>Translated_156_residues MLYMDKIRQRLSDLGYAIYDAPAPVGSYVQCVRTGNLLHLSGGISVNGDDKYFGKVGQELTVEEGQAAARAAILNRLAVI VQVVGSLEKVSRIVAVNGFVNAGPDFYDHPKVLNGASDLLVEAFGEIGRHSRTAVGVSALPLNVAVEISMVVEVRD >Mature_156_residues MLYMDKIRQRLSDLGYAIYDAPAPVGSYVQCVRTGNLLHLSGGISVNGDDKYFGKVGQELTVEEGQAAARAAILNRLAVI VQVVGSLEKVSRIVAVNGFVNAGPDFYDHPKVLNGASDLLVEAFGEIGRHSRTAVGVSALPLNVAVEISMVVEVRD
Specific function: Unknown
COG id: COG0251
COG function: function code J; Putative translation initiation inhibitor, yjgF family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16641; Mature: 16641
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYMDKIRQRLSDLGYAIYDAPAPVGSYVQCVRTGNLLHLSGGISVNGDDKYFGKVGQEL CCCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCEEEECCCEEECCCCHHHHHCCCEE TVEEGQAAARAAILNRLAVIVQVVGSLEKVSRIVAVNGFVNAGPDFYDHPKVLNGASDLL ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCHHHHH VEAFGEIGRHSRTAVGVSALPLNVAVEISMVVEVRD HHHHHHHCCCCCCCCCEEECCEEEEEEEEEEEEECC >Mature Secondary Structure MLYMDKIRQRLSDLGYAIYDAPAPVGSYVQCVRTGNLLHLSGGISVNGDDKYFGKVGQEL CCCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCEEEECCCEEECCCCHHHHHCCCEE TVEEGQAAARAAILNRLAVIVQVVGSLEKVSRIVAVNGFVNAGPDFYDHPKVLNGASDLL ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCHHHHH VEAFGEIGRHSRTAVGVSALPLNVAVEISMVVEVRD HHHHHHHCCCCCCCCCEEECCEEEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA