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The map label for this gene is cydA [H]

Identifier: 187736182

GI number: 187736182

Start: 2060562

End: 2061941

Strand: Reverse

Name: cydA [H]

Synonym: Amuc_1695

Alternate gene names: 187736182

Gene position: 2061941-2060562 (Counterclockwise)

Preceding gene: 187736183

Following gene: 187736181

Centisome position: 77.4

GC content: 58.33

Gene sequence:

>1380_bases
ATGGACGATCCGGTCTTATTATCCCGTCTCCAATTCGCCATCACGATCATGTTCCACTACATCTTCCCGCCGATGACCAT
CGGCCTGGGGGTGGTTCTGGTCGCCCTGGAAGGCCTGTGGCTGAAAACGAAGAATGACCTCTACCACAAGCAGGCCAAAT
TCTGGACCAGAATCTTCGGTATCATCTTCGCCCTTGGCGTAGCCTCCGGCATCGTGATGGAATTCCAGTTCGGCACCAAC
TGGGCGGATTATTCCCGCTGCGTAGGCGACATCTTTGGCAGCCCCCTGGCGGCGGAGGGAATCTTCGCCTTCTTCCTGGA
ATCAGGCTTCCTGGCCATCCTGCTTTTCGGCTGGGACAAGGTGGGCCCAAAAATGCACTTTCTTTCCTCCTGCATGGTCG
CTCTTGGCGCCCATTTCAGCGCCATCTGGATCATTGTGGCCAACTCCTGGATGCAGACTCCCGCCGGATACAAGCTGGTG
GAAGTAAACGGGAAAATCCAGGCCCATATAACCAGCTTCTATGACGTGGTCTTCAATCCGTCCACCGTGGACCGCCTGAC
GCACGCGCTCGCCGGCTGCTGGCTGGCGGGAGCCACGCTCGTCCTCAGCGTCTCCGCCTGGTATATTTTGAAAAAACGTT
TTACCGGAGGATCGGAAAAAAGCTTCAAGGTGGCATTGGTCATCGGCCTCATCGGCGTGGCTGGCATGGGCATCACGGGA
GATTCCAGCGCACGAGAAGTCTCCGTCCACCAGCCTGCCAAATTCGCGGCTATGGAAGGCGTCATGGAATCCGGCGCCCC
TCAGGACCTCCATCTCATCGGCTGGATGAACCCGTCCACCCATGAAGTGACGGGAATCTCCATCCCGTACTTGCTCACCC
TCCTGACCCATCACGACCTGGACACGTCCATCACCGGCATGAACGACATCCCGCAGGACGAACGCCCTCCCATCCTGCCC
GTCTTTTACTCCTTCCATCTCATGATCCTGATCGGCTGCGCCCTGGCGGCCCTGTTTCTGGCGGGCCTGTGGGGGTGGAA
AAGAGGCTGGCTCTTCCAGAAGCGCTGGCTGCTCTGGTGCTTTGTTTTCTCCGTACTGGGCCCGCAAATAGCCAACCAGG
CGGGCTGGGCCGTAGCGGAACTGGGGCGCCAGCCATGGATTGTGTACGGCATCCTGAGAACGGAACACGCCGTATCCCCC
ACCCTCACCGCGGCGGAAGCCCTTTCCTCCCTGGGTATGTTCTTCGTCATTTATGCCCTGCTGCTGGCCCTCTTCCTCTA
TCAAATCACCCATAAGATCCACAAAGGTCCGGACCAGGAAGCTGGCGAAGACGACGGCGCCGGGGAAGGCAAACTCCAGG
TTCCTTTTGTCAAAGACTAA

Upstream 100 bases:

>100_bases
AATTGAACAAAGGGTCTCTTGGGATGTATAAAGTATGAAGGTATCGGTGTTTGGCTGCCGTCCTCCTGTTCCATAAACAT
CCACTCATCCCCAATCAATC

Downstream 100 bases:

>100_bases
TCTTTATCCCTCTTTAAAAATCATGTTGGACAATCTCACTCTCGCAGACCTGCAAATCATCTGGTTCATCCTCGTCGGCG
TGCTTTTCTCCGGATACGCC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MDDPVLLSRLQFAITIMFHYIFPPMTIGLGVVLVALEGLWLKTKNDLYHKQAKFWTRIFGIIFALGVASGIVMEFQFGTN
WADYSRCVGDIFGSPLAAEGIFAFFLESGFLAILLFGWDKVGPKMHFLSSCMVALGAHFSAIWIIVANSWMQTPAGYKLV
EVNGKIQAHITSFYDVVFNPSTVDRLTHALAGCWLAGATLVLSVSAWYILKKRFTGGSEKSFKVALVIGLIGVAGMGITG
DSSAREVSVHQPAKFAAMEGVMESGAPQDLHLIGWMNPSTHEVTGISIPYLLTLLTHHDLDTSITGMNDIPQDERPPILP
VFYSFHLMILIGCALAALFLAGLWGWKRGWLFQKRWLLWCFVFSVLGPQIANQAGWAVAELGRQPWIVYGILRTEHAVSP
TLTAAEALSSLGMFFVIYALLLALFLYQITHKIHKGPDQEAGEDDGAGEGKLQVPFVKD

Sequences:

>Translated_459_residues
MDDPVLLSRLQFAITIMFHYIFPPMTIGLGVVLVALEGLWLKTKNDLYHKQAKFWTRIFGIIFALGVASGIVMEFQFGTN
WADYSRCVGDIFGSPLAAEGIFAFFLESGFLAILLFGWDKVGPKMHFLSSCMVALGAHFSAIWIIVANSWMQTPAGYKLV
EVNGKIQAHITSFYDVVFNPSTVDRLTHALAGCWLAGATLVLSVSAWYILKKRFTGGSEKSFKVALVIGLIGVAGMGITG
DSSAREVSVHQPAKFAAMEGVMESGAPQDLHLIGWMNPSTHEVTGISIPYLLTLLTHHDLDTSITGMNDIPQDERPPILP
VFYSFHLMILIGCALAALFLAGLWGWKRGWLFQKRWLLWCFVFSVLGPQIANQAGWAVAELGRQPWIVYGILRTEHAVSP
TLTAAEALSSLGMFFVIYALLLALFLYQITHKIHKGPDQEAGEDDGAGEGKLQVPFVKD
>Mature_459_residues
MDDPVLLSRLQFAITIMFHYIFPPMTIGLGVVLVALEGLWLKTKNDLYHKQAKFWTRIFGIIFALGVASGIVMEFQFGTN
WADYSRCVGDIFGSPLAAEGIFAFFLESGFLAILLFGWDKVGPKMHFLSSCMVALGAHFSAIWIIVANSWMQTPAGYKLV
EVNGKIQAHITSFYDVVFNPSTVDRLTHALAGCWLAGATLVLSVSAWYILKKRFTGGSEKSFKVALVIGLIGVAGMGITG
DSSAREVSVHQPAKFAAMEGVMESGAPQDLHLIGWMNPSTHEVTGISIPYLLTLLTHHDLDTSITGMNDIPQDERPPILP
VFYSFHLMILIGCALAALFLAGLWGWKRGWLFQKRWLLWCFVFSVLGPQIANQAGWAVAELGRQPWIVYGILRTEHAVSP
TLTAAEALSSLGMFFVIYALLLALFLYQITHKIHKGPDQEAGEDDGAGEGKLQVPFVKD

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=517, Percent_Identity=34.6228239845261, Blast_Score=286, Evalue=3e-78,
Organism=Escherichia coli, GI87081779, Length=321, Percent_Identity=41.1214953271028, Blast_Score=249, Evalue=2e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 50518; Mature: 50518

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDPVLLSRLQFAITIMFHYIFPPMTIGLGVVLVALEGLWLKTKNDLYHKQAKFWTRIFG
CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHH
IIFALGVASGIVMEFQFGTNWADYSRCVGDIFGSPLAAEGIFAFFLESGFLAILLFGWDK
HHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCC
VGPKMHFLSSCMVALGAHFSAIWIIVANSWMQTPAGYKLVEVNGKIQAHITSFYDVVFNP
CCHHHHHHHHHHHHHCCHHHEEEEEEECCHHCCCCCEEEEEECCEEEEHHHHHHHHHCCC
STVDRLTHALAGCWLAGATLVLSVSAWYILKKRFTGGSEKSFKVALVIGLIGVAGMGITG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHCCCCCC
DSSAREVSVHQPAKFAAMEGVMESGAPQDLHLIGWMNPSTHEVTGISIPYLLTLLTHHDL
CCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCC
DTSITGMNDIPQDERPPILPVFYSFHLMILIGCALAALFLAGLWGWKRGWLFQKRWLLWC
CCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHH
FVFSVLGPQIANQAGWAVAELGRQPWIVYGILRTEHAVSPTLTAAEALSSLGMFFVIYAL
HHHHHHCHHHHHHCCHHHHHHCCCCEEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LLALFLYQITHKIHKGPDQEAGEDDGAGEGKLQVPFVKD
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCC
>Mature Secondary Structure
MDDPVLLSRLQFAITIMFHYIFPPMTIGLGVVLVALEGLWLKTKNDLYHKQAKFWTRIFG
CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHH
IIFALGVASGIVMEFQFGTNWADYSRCVGDIFGSPLAAEGIFAFFLESGFLAILLFGWDK
HHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCC
VGPKMHFLSSCMVALGAHFSAIWIIVANSWMQTPAGYKLVEVNGKIQAHITSFYDVVFNP
CCHHHHHHHHHHHHHCCHHHEEEEEEECCHHCCCCCEEEEEECCEEEEHHHHHHHHHCCC
STVDRLTHALAGCWLAGATLVLSVSAWYILKKRFTGGSEKSFKVALVIGLIGVAGMGITG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHCCCCCC
DSSAREVSVHQPAKFAAMEGVMESGAPQDLHLIGWMNPSTHEVTGISIPYLLTLLTHHDL
CCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCC
DTSITGMNDIPQDERPPILPVFYSFHLMILIGCALAALFLAGLWGWKRGWLFQKRWLLWC
CCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHH
FVFSVLGPQIANQAGWAVAELGRQPWIVYGILRTEHAVSPTLTAAEALSSLGMFFVIYAL
HHHHHHCHHHHHHCCHHHHHHCCCCEEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LLALFLYQITHKIHKGPDQEAGEDDGAGEGKLQVPFVKD
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]