Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is cydB [H]
Identifier: 187736181
GI number: 187736181
Start: 2059502
End: 2060539
Strand: Reverse
Name: cydB [H]
Synonym: Amuc_1694
Alternate gene names: 187736181
Gene position: 2060539-2059502 (Counterclockwise)
Preceding gene: 187736182
Following gene: 187736180
Centisome position: 77.34
GC content: 56.45
Gene sequence:
>1038_bases ATGTTGGACAATCTCACTCTCGCAGACCTGCAAATCATCTGGTTCATCCTCGTCGGCGTGCTTTTCTCCGGATACGCCAT CCTGGACGGCTTTGACCTGGGCACCGGAGCTCTTCAGCTTTTCATCAAGGGCGATGAAAACAGAAGACTCACACTAAATG CCGTGGGCCCTGTATGGGACGGAAACGAAGTCTGGCTCATCACAGGCGGAGGAGCCCTCTTCGCTGCCTTTCCGTACGTA TACGCCTCCGTCTTCTCCGGGTTTTACCTGGCCTTCATGCTCCTGCTGCTCACCCTTATCTTCCGTGCCGTGTCCATTGA ATTCAGAAGCAAACAGCCCATGAAATGGTGGCGCAGGGGATGGGACACCACTTTCTCCATCAGCAGCCTTCTGGCAGCTC TGCTCATCGGCGTAGCCATGGGGAACGTCACCAAAGGCATTCCTCTGGACGACCATGGCAACTTCACCGGAACATTTCTC AGCCTGCTGAATCCTTATTCCATTCTTCTGGGACTGACGACGGTCGCCCTGTTCTCCATGCACGGGGGAATCTACCTGCT GATGAAAACCCAGGGAAGCCTGCAGGAACAAATCAGAAAACTGCTCAGACCCTGCGTCATCATCTTCACTGTCCTGATCA TCCTGCACGGGGCGGCCACCCTGCTGTACGTGCCGCACGTAGCGGCCGCCCTGGAACGCTCCCCCTGGATTTACGGAATC GCTGCCCTGGCAGTCATTTCCATCGCGTCCATCTGGATATTCATCCACAGGAACCGTCCGGGCTGGGCCTTTGTCGCCTC CTGCTCCACCATGGGCTGCATGATGGCTCTCTTCGGGACAGCGATGTTCCCCAACCTGCTCTACTCCATGCCCAATCCGG AACATTCCCTGACGCTCGCCAACGGCTCATCCACCCGGGAAAGCCTGGTCGTGATGACATACATAGCCATTCTGGGCGTG CCGCTCGTCCTGGCTTATTCCGCTGCCATTTACTGGGTCTTCCGCGGAAAAGTCCAGCTCAACGAACACAGTTACTGA
Upstream 100 bases:
>100_bases AAAGGTCCGGACCAGGAAGCTGGCGAAGACGACGGCGCCGGGGAAGGCAAACTCCAGGTTCCTTTTGTCAAAGACTAATC TTTATCCCTCTTTAAAAATC
Downstream 100 bases:
>100_bases TGCCCTGCGGGCAAAAATAGCGATCAGCGAACCGAAAACGCCCTGTACCATCCGCCCTGCCGCATGAATGCCTCCATCTT CTCCAAACTCCCGCCGGAGG
Product: cytochrome d ubiquinol oxidase, subunit II
Products: NA
Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MLDNLTLADLQIIWFILVGVLFSGYAILDGFDLGTGALQLFIKGDENRRLTLNAVGPVWDGNEVWLITGGGALFAAFPYV YASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRGWDTTFSISSLLAALLIGVAMGNVTKGIPLDDHGNFTGTFL SLLNPYSILLGLTTVALFSMHGGIYLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAALERSPWIYGI AALAVISIASIWIFIHRNRPGWAFVASCSTMGCMMALFGTAMFPNLLYSMPNPEHSLTLANGSSTRESLVVMTYIAILGV PLVLAYSAAIYWVFRGKVQLNEHSY
Sequences:
>Translated_345_residues MLDNLTLADLQIIWFILVGVLFSGYAILDGFDLGTGALQLFIKGDENRRLTLNAVGPVWDGNEVWLITGGGALFAAFPYV YASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRGWDTTFSISSLLAALLIGVAMGNVTKGIPLDDHGNFTGTFL SLLNPYSILLGLTTVALFSMHGGIYLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAALERSPWIYGI AALAVISIASIWIFIHRNRPGWAFVASCSTMGCMMALFGTAMFPNLLYSMPNPEHSLTLANGSSTRESLVVMTYIAILGV PLVLAYSAAIYWVFRGKVQLNEHSY >Mature_345_residues MLDNLTLADLQIIWFILVGVLFSGYAILDGFDLGTGALQLFIKGDENRRLTLNAVGPVWDGNEVWLITGGGALFAAFPYV YASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRGWDTTFSISSLLAALLIGVAMGNVTKGIPLDDHGNFTGTFL SLLNPYSILLGLTTVALFSMHGGIYLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAALERSPWIYGI AALAVISIASIWIFIHRNRPGWAFVASCSTMGCMMALFGTAMFPNLLYSMPNPEHSLTLANGSSTRESLVVMTYIAILGV PLVLAYSAAIYWVFRGKVQLNEHSY
Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]
COG id: COG1294
COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli AppB [H]
Homologues:
Organism=Escherichia coli, GI1786954, Length=371, Percent_Identity=37.1967654986523, Blast_Score=229, Evalue=2e-61, Organism=Escherichia coli, GI1787213, Length=360, Percent_Identity=32.5, Blast_Score=182, Evalue=2e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003317 [H]
Pfam domain/function: PF02322 Cyto_ox_2 [H]
EC number: 1.10.3.-
Molecular weight: Translated: 38005; Mature: 38005
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDNLTLADLQIIWFILVGVLFSGYAILDGFDLGTGALQLFIKGDENRRLTLNAVGPVWD CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCC GNEVWLITGGGALFAAFPYVYASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRG CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC WDTTFSISSLLAALLIGVAMGNVTKGIPLDDHGNFTGTFLSLLNPYSILLGLTTVALFSM CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH HGGIYLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAALERSPWIYGI CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH AALAVISIASIWIFIHRNRPGWAFVASCSTMGCMMALFGTAMFPNLLYSMPNPEHSLTLA HHHHHHHHHHHEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE NGSSTRESLVVMTYIAILGVPLVLAYSAAIYWVFRGKVQLNEHSY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECEEEECCCCC >Mature Secondary Structure MLDNLTLADLQIIWFILVGVLFSGYAILDGFDLGTGALQLFIKGDENRRLTLNAVGPVWD CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCC GNEVWLITGGGALFAAFPYVYASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRG CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC WDTTFSISSLLAALLIGVAMGNVTKGIPLDDHGNFTGTFLSLLNPYSILLGLTTVALFSM CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH HGGIYLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAALERSPWIYGI CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH AALAVISIASIWIFIHRNRPGWAFVASCSTMGCMMALFGTAMFPNLLYSMPNPEHSLTLA HHHHHHHHHHHEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE NGSSTRESLVVMTYIAILGVPLVLAYSAAIYWVFRGKVQLNEHSY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]