Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is nikA [C]

Identifier: 187736172

GI number: 187736172

Start: 2046109

End: 2048115

Strand: Direct

Name: nikA [C]

Synonym: Amuc_1685

Alternate gene names: 187736172

Gene position: 2046109-2048115 (Clockwise)

Preceding gene: 187736171

Following gene: 187736173

Centisome position: 76.8

GC content: 55.41

Gene sequence:

>2007_bases
ATGGACGGCAGGGGGATGCCTGCCGTATTTGACGGTTTTGTGGAACGCTGGAACAGGGCCGTGGAACGGGAACTGCGCCG
TGAATTGGCTGAAGGGGAGAGGAAGGAAAAACTTCTGGTCGTTTCCCGCGGGGAAGGGGACGGCCGGCGTTTGGCGGAAC
AGGCTCGTTCCGTGGAACGCATCAGGAAAAGGCTGTTATTGAAAGACCATATCCGCCTTCTTCCTTTGGAAGACGTTCCG
GACGGATTGGAATGGCAAACCGGAATGGAAGAGCCGGATGTGGGTGATCCGCGCGCCGTCAAGGGTGGAAAAGTCCGGCT
GTGGATCAATACTCCGTTTCCCGGAACTTTGCGTGCTTTCGGGCCGGGAAGTGAAAATTTTTTCAATTATTCCGCCATTG
ACAACGTGTGGCTTCCCCTCGTGGGGCTTCATCCGGAAACCTTCCGTCCCATTCCGGGCCTGGCGGACCGCTGGGCTTTG
TCCGCAGACGGAAAAACCGTTTTTTATCATCTGGATCCGGAAGCGGCCTATTCGGACGGACGCATCGTGAAAGCGCAGGA
TTTTCTGCTGAACATTTGCCTCCGTACGTCCGGTTTTGCCCGGGATCCGTTCTGGACTACCCTGTTCCGTTCCATGTATG
ATCAGATTACGGTATACGGGGATTCCGTCATTGCCCTTACGCTGCCGTCCCGCGGGCCGCTGCTGCCTTACATGGCCTGT
GCGGATTTTCATCCGGCCCATCCCGGTTTTTACCATGATTTCAACGCTCTGTTTCTGGAACGCTACCAGTGGAAAGTCCC
TCCAAATACGGGTGGCTACATGGTTGTTCCCTCTAAAATCCGGATAGGAGAAAGCATTACCCTGGCCCGCGTGAAAAATT
GGTGGGCGAAGGAGAGGAAGTATTACCGCCATTCCTGCAATGCGGACCAGGTGGAACATGTGTTTGTGAACATGGAAAAC
AAGGCGGTTGAAATGTTCCGCCGCGGGGAACTGGACATCATGAACGTTCGCAAGCCGGAGGTGTGGGAAACCGGGCTGGA
GCTGCCGGAAGTGCACCGGGGCTATATAGATAAATACAGCCTGGAAGCCAATTACGCCTGTCCCCCGTACGGACTGTATC
TGAATTGCTCGGACAAGTTGTTGAAAAATCCGGATATCCGCCGCGGTCTGGCGCATTCCGTGAACATGGGCCTGGTGATT
GATACTTTGTTCCGCGGGAATATGAGAAGGCTCGGTTCCTACATGGAGGGGTACGGAGACCTGACTCTTCCGTTGAAAGC
TCCGGAATACAGCAAGAAAAAAGCCATGGAATATTTTGCCCGCGCCGGCTACCGGGAAATGGGGACTGACGGAGTGCTGA
AAAATGAACGGGGAGAGCGGCTGGTGGTGGAACTGACGTTTGCGGATTCATCCACCCTGATGACCAACGTCTGTTCCATC
CTCCGGCAGGAGGCCCTGAAGTGCGGGGTGGACCTGCGTCTGGATTCCCTTACCTACAGTGTCTGTTCCCGTAAGGTTTT
TGAAAAACGGTATCAGGCGGCTCTATGGGCGTGGCCGCTGCAGACGCCGTTCCCCCGGCTGTATGAAACATTCTCTTCCG
AACTGGCGTATGATGCCCGCGGAAATCCCGTAGGCAATACGAATAATATTATGGCCGTGTCGGACGCTGGACTGGATGCC
GCCCTGGATGCGGAACGCAATGCCCCGGATACCGGTTCCCTGAAACTGGCCCTTCACCGTGCCCAGCAGCGTCTTCATGA
ACTTTGCGTCTGGATTCCCGGCTGGAGGGAACCCTACACGCATATCGCCTGCTGGCGCTGGATACGCTGGCCGGAATCTC
CCACCCGGTTCTGTTCCCCCAGAATTTACAATCCGCTGGAGTCGCATCTGTACTGGGTGGATGAAGAAATGAAGAAGGAG
ACGCTGGAGGCTCGGAGCCGGGGCGTACCGTTTGAGGAAAAGCATCAAATAATATATCTTGAAAGACAGGATGGTGCCGC
TCCGTAA

Upstream 100 bases:

>100_bases
GATATCCATACTGGGGGCATTGGCCCTTTCCGTCTTTCTGGGAGGTGTCTTTTACTTTTCCCAGCGTGAGAAGAATGTTT
GGCATGAATTTTCCGGACGG

Downstream 100 bases:

>100_bases
TAAAACCGGGTCACCGTCTCCTTTTTAAATTGAAAGGAGGTGGTTTTTCATCATAATCTCCCTCTCATTTACCGTAATTA
ATTATTAATTCCATAATCAT

Product: extracellular solute-binding protein family 5

Products: Ni2; [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 668; Mature: 668

Protein sequence:

>668_residues
MDGRGMPAVFDGFVERWNRAVERELRRELAEGERKEKLLVVSRGEGDGRRLAEQARSVERIRKRLLLKDHIRLLPLEDVP
DGLEWQTGMEEPDVGDPRAVKGGKVRLWINTPFPGTLRAFGPGSENFFNYSAIDNVWLPLVGLHPETFRPIPGLADRWAL
SADGKTVFYHLDPEAAYSDGRIVKAQDFLLNICLRTSGFARDPFWTTLFRSMYDQITVYGDSVIALTLPSRGPLLPYMAC
ADFHPAHPGFYHDFNALFLERYQWKVPPNTGGYMVVPSKIRIGESITLARVKNWWAKERKYYRHSCNADQVEHVFVNMEN
KAVEMFRRGELDIMNVRKPEVWETGLELPEVHRGYIDKYSLEANYACPPYGLYLNCSDKLLKNPDIRRGLAHSVNMGLVI
DTLFRGNMRRLGSYMEGYGDLTLPLKAPEYSKKKAMEYFARAGYREMGTDGVLKNERGERLVVELTFADSSTLMTNVCSI
LRQEALKCGVDLRLDSLTYSVCSRKVFEKRYQAALWAWPLQTPFPRLYETFSSELAYDARGNPVGNTNNIMAVSDAGLDA
ALDAERNAPDTGSLKLALHRAQQRLHELCVWIPGWREPYTHIACWRWIRWPESPTRFCSPRIYNPLESHLYWVDEEMKKE
TLEARSRGVPFEEKHQIIYLERQDGAAP

Sequences:

>Translated_668_residues
MDGRGMPAVFDGFVERWNRAVERELRRELAEGERKEKLLVVSRGEGDGRRLAEQARSVERIRKRLLLKDHIRLLPLEDVP
DGLEWQTGMEEPDVGDPRAVKGGKVRLWINTPFPGTLRAFGPGSENFFNYSAIDNVWLPLVGLHPETFRPIPGLADRWAL
SADGKTVFYHLDPEAAYSDGRIVKAQDFLLNICLRTSGFARDPFWTTLFRSMYDQITVYGDSVIALTLPSRGPLLPYMAC
ADFHPAHPGFYHDFNALFLERYQWKVPPNTGGYMVVPSKIRIGESITLARVKNWWAKERKYYRHSCNADQVEHVFVNMEN
KAVEMFRRGELDIMNVRKPEVWETGLELPEVHRGYIDKYSLEANYACPPYGLYLNCSDKLLKNPDIRRGLAHSVNMGLVI
DTLFRGNMRRLGSYMEGYGDLTLPLKAPEYSKKKAMEYFARAGYREMGTDGVLKNERGERLVVELTFADSSTLMTNVCSI
LRQEALKCGVDLRLDSLTYSVCSRKVFEKRYQAALWAWPLQTPFPRLYETFSSELAYDARGNPVGNTNNIMAVSDAGLDA
ALDAERNAPDTGSLKLALHRAQQRLHELCVWIPGWREPYTHIACWRWIRWPESPTRFCSPRIYNPLESHLYWVDEEMKKE
TLEARSRGVPFEEKHQIIYLERQDGAAP
>Mature_668_residues
MDGRGMPAVFDGFVERWNRAVERELRRELAEGERKEKLLVVSRGEGDGRRLAEQARSVERIRKRLLLKDHIRLLPLEDVP
DGLEWQTGMEEPDVGDPRAVKGGKVRLWINTPFPGTLRAFGPGSENFFNYSAIDNVWLPLVGLHPETFRPIPGLADRWAL
SADGKTVFYHLDPEAAYSDGRIVKAQDFLLNICLRTSGFARDPFWTTLFRSMYDQITVYGDSVIALTLPSRGPLLPYMAC
ADFHPAHPGFYHDFNALFLERYQWKVPPNTGGYMVVPSKIRIGESITLARVKNWWAKERKYYRHSCNADQVEHVFVNMEN
KAVEMFRRGELDIMNVRKPEVWETGLELPEVHRGYIDKYSLEANYACPPYGLYLNCSDKLLKNPDIRRGLAHSVNMGLVI
DTLFRGNMRRLGSYMEGYGDLTLPLKAPEYSKKKAMEYFARAGYREMGTDGVLKNERGERLVVELTFADSSTLMTNVCSI
LRQEALKCGVDLRLDSLTYSVCSRKVFEKRYQAALWAWPLQTPFPRLYETFSSELAYDARGNPVGNTNNIMAVSDAGLDA
ALDAERNAPDTGSLKLALHRAQQRLHELCVWIPGWREPYTHIACWRWIRWPESPTRFCSPRIYNPLESHLYWVDEEMKKE
TLEARSRGVPFEEKHQIIYLERQDGAAP

Specific function: Involved In A Nickel Transport System, Probably Represents The Nickel Binder. [C]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 76762; Mature: 76762

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGRGMPAVFDGFVERWNRAVERELRRELAEGERKEKLLVVSRGEGDGRRLAEQARSVER
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
IRKRLLLKDHIRLLPLEDVPDGLEWQTGMEEPDVGDPRAVKGGKVRLWINTPFPGTLRAF
HHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEC
GPGSENFFNYSAIDNVWLPLVGLHPETFRPIPGLADRWALSADGKTVFYHLDPEAAYSDG
CCCCCCCEECHHHCCCHHCEECCCCCCCCCCCCCHHHEEEECCCCEEEEEECCCCCCCCC
RIVKAQDFLLNICLRTSGFARDPFWTTLFRSMYDQITVYGDSVIALTLPSRGPLLPYMAC
CEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEECCEEEEEECCCCCCCCCHHHH
ADFHPAHPGFYHDFNALFLERYQWKVPPNTGGYMVVPSKIRIGESITLARVKNWWAKERK
CCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCEEEECCEEECCCCCHHHHHHHHHHHHHH
YYRHSCNADQVEHVFVNMENKAVEMFRRGELDIMNVRKPEVWETGLELPEVHRGYIDKYS
HHHHCCCCCCEEEEEEECCHHHHHHHHCCCCEEEECCCCHHHHCCCCCCHHHHCCCCCEE
LEANYACPPYGLYLNCSDKLLKNPDIRRGLAHSVNMGLVIDTLFRGNMRRLGSYMEGYGD
CCCCCCCCCCCEEECCCHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCC
LTLPLKAPEYSKKKAMEYFARAGYREMGTDGVLKNERGERLVVELTFADSSTLMTNVCSI
EEEEECCCCHHHHHHHHHHHHCCCHHCCCCCCEECCCCCEEEEEEEECCCHHHHHHHHHH
LRQEALKCGVDLRLDSLTYSVCSRKVFEKRYQAALWAWPLQTPFPRLYETFSSELAYDAR
HHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHEECCC
GNPVGNTNNIMAVSDAGLDAALDAERNAPDTGSLKLALHRAQQRLHELCVWIPGWREPYT
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCHH
HIACWRWIRWPESPTRFCSPRIYNPLESHLYWVDEEMKKETLEARSRGVPFEEKHQIIYL
HHHHHHHCCCCCCCHHHCCCCCCCCHHHHEEECCHHHHHHHHHHHHCCCCCCCCCCEEEE
ERQDGAAP
ECCCCCCC
>Mature Secondary Structure
MDGRGMPAVFDGFVERWNRAVERELRRELAEGERKEKLLVVSRGEGDGRRLAEQARSVER
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
IRKRLLLKDHIRLLPLEDVPDGLEWQTGMEEPDVGDPRAVKGGKVRLWINTPFPGTLRAF
HHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEC
GPGSENFFNYSAIDNVWLPLVGLHPETFRPIPGLADRWALSADGKTVFYHLDPEAAYSDG
CCCCCCCEECHHHCCCHHCEECCCCCCCCCCCCCHHHEEEECCCCEEEEEECCCCCCCCC
RIVKAQDFLLNICLRTSGFARDPFWTTLFRSMYDQITVYGDSVIALTLPSRGPLLPYMAC
CEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEECCEEEEEECCCCCCCCCHHHH
ADFHPAHPGFYHDFNALFLERYQWKVPPNTGGYMVVPSKIRIGESITLARVKNWWAKERK
CCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCEEEECCEEECCCCCHHHHHHHHHHHHHH
YYRHSCNADQVEHVFVNMENKAVEMFRRGELDIMNVRKPEVWETGLELPEVHRGYIDKYS
HHHHCCCCCCEEEEEEECCHHHHHHHHCCCCEEEECCCCHHHHCCCCCCHHHHCCCCCEE
LEANYACPPYGLYLNCSDKLLKNPDIRRGLAHSVNMGLVIDTLFRGNMRRLGSYMEGYGD
CCCCCCCCCCCEEECCCHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCC
LTLPLKAPEYSKKKAMEYFARAGYREMGTDGVLKNERGERLVVELTFADSSTLMTNVCSI
EEEEECCCCHHHHHHHHHHHHCCCHHCCCCCCEECCCCCEEEEEEEECCCHHHHHHHHHH
LRQEALKCGVDLRLDSLTYSVCSRKVFEKRYQAALWAWPLQTPFPRLYETFSSELAYDAR
HHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHEECCC
GNPVGNTNNIMAVSDAGLDAALDAERNAPDTGSLKLALHRAQQRLHELCVWIPGWREPYT
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCHH
HIACWRWIRWPESPTRFCSPRIYNPLESHLYWVDEEMKKETLEARSRGVPFEEKHQIIYL
HHHHHHHCCCCCCCHHHCCCCCCCCHHHHEEECCHHHHHHHHHHHHCCCCCCCCCCEEEE
ERQDGAAP
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ni2; [Periplasm]; ATP; H2O [C]

Specific reaction: Ni2+ [Periplasm] + ATP + H2O = Ni2+ [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA