Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736145
Identifier: 187736145
GI number: 187736145
Start: 2002974
End: 2004176
Strand: Direct
Name: 187736145
Synonym: Amuc_1657
Alternate gene names: NA
Gene position: 2002974-2004176 (Clockwise)
Preceding gene: 187736143
Following gene: 187736146
Centisome position: 75.18
GC content: 60.76
Gene sequence:
>1203_bases ATGTCCGCCTTTATCATCAGCCTGCCGGCCCTGGAACGCAACGCTCTTATCCTGAGGGATGTGGCGGATGCCGCAGGGTG CCGCATCGCTCTGGCGCTGAAGGGGTTTTCCTGCTGGCCCTGTTTTGAGGCCCTGTCCCCCTGGCTGGACGGCTGCTGCG CTTCCGGCCTGTGGGAGGCGCGGCTGGCCCGGCGCAGGTTCGGGAAGCATGTGCTGACTTATTCTCCCGGCCATGCCCCG GAGGAAATAGCGGAGCTGGCGGAGATTTCCAGCCATCTTGATTTTAACAGCCTGACGCAGTGGAGCCGTTTCCGGGAGGA AGTGATGCGGCATCCCCGCTTTGTTTCCGGTGAATTGAAATGCGGCTTGCGCGTCAATCCCCAATGTTCCACCGGGCATA CGCCCATATATGACCCCTGTGCCCCCGGTTCCCGCCTGGGCGTGACGCCGGACATGATGCAGGGGGCGGACCTGTCCGGC ATTTCCGGTCTTCATTTCCATACTTTATGCGAACAGGGAGCGGATGACCTGGCGGTAACGATGGAGGCGGTGGAACGCCA CTTCGGCCATCTTCTGAGCCGCCCGGAGATTTCCTGGCTGAATATGGGAGGAGGTCATTGGATTACCAAACCCGACTATG ACCGGAAGCTGCTGGCGGCACTTATCCGCCGCATCCGCGAACGCTACGGTGTGGAGGTATGGCTGGAACCGGGAGAGGCC GCTGCCATTCATACCGGGGTGCTGCGGTGCCGGGTGCTGGACCTTTTTTCCGCGGAGGGGGTGAATCATGCCATTCTGGA TGTTTCCGCATCCGCCCACATGCCGGATACGCTGGAAATGCCTTATCGGCCGGATGTGTTCCAGATTGCAGGAGACGCTT CCCTCCGTTCCGCGCAGCAGCCCGCCGTACGGTTGGAAGGGGAGAGCTATGCGCTGGCGGGGAAGGCCGGGGAAAAAGCT TATACGTACCGGCTGGGCGCCCCCACGTGCCTGGCGGGAGACCGGCTTGGAGATTATTCCTTCGCGGAGCCCCTGGCGGT AGGTGACGAACTTGTGTTTGACGATATGGCGCATTATACGATGGTGAAGACTACGTTTTTCAATGGCGTGCGCCATCCGG ACATCGCCGTTCAGAGAAAAGACGGTTCCGTGGAGACGGTGCGCCGTTTTTCCTATGAAGATTTTGAGGCCCGCCTGGGC TAG
Upstream 100 bases:
>100_bases AGTGGGGAAGGCGTTCTCATGCCCGTCTCGCAGGTATGATGGTAAATTACTAAAATTTTTCTCGCAAATCGTTCTGAATC GCTTAGGTTGTCGTTGCTTT
Downstream 100 bases:
>100_bases AATATTTGACCAGACAGATTGACATGGCAGCAGCTAAAGAAGGCATCAAGCAGAAAGTCCGCGGGTGGAGTCACCATGAT TCCGCAGATTTGTACGGCAT
Product: carboxynorspermidine decarboxylase
Products: NA
Alternate protein names: Carboxynorspermidine Decarboxylase NspC; Diaminopimelate Decarboxylase; Pyridoxal-Dependent Decarboxylase NspC; LOW QUALITY PROTEIN Orn/DAP/Arg Decarboxylase; Carboxynorspermidine/Carboxyspermidine Decarboxylase; Pyridoxal-Dependent Decarboxylase; Carboxynorspermide Decarboxylase; 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MSAFIISLPALERNALILRDVADAAGCRIALALKGFSCWPCFEALSPWLDGCCASGLWEARLARRRFGKHVLTYSPGHAP EEIAELAEISSHLDFNSLTQWSRFREEVMRHPRFVSGELKCGLRVNPQCSTGHTPIYDPCAPGSRLGVTPDMMQGADLSG ISGLHFHTLCEQGADDLAVTMEAVERHFGHLLSRPEISWLNMGGGHWITKPDYDRKLLAALIRRIRERYGVEVWLEPGEA AAIHTGVLRCRVLDLFSAEGVNHAILDVSASAHMPDTLEMPYRPDVFQIAGDASLRSAQQPAVRLEGESYALAGKAGEKA YTYRLGAPTCLAGDRLGDYSFAEPLAVGDELVFDDMAHYTMVKTTFFNGVRHPDIAVQRKDGSVETVRRFSYEDFEARLG
Sequences:
>Translated_400_residues MSAFIISLPALERNALILRDVADAAGCRIALALKGFSCWPCFEALSPWLDGCCASGLWEARLARRRFGKHVLTYSPGHAP EEIAELAEISSHLDFNSLTQWSRFREEVMRHPRFVSGELKCGLRVNPQCSTGHTPIYDPCAPGSRLGVTPDMMQGADLSG ISGLHFHTLCEQGADDLAVTMEAVERHFGHLLSRPEISWLNMGGGHWITKPDYDRKLLAALIRRIRERYGVEVWLEPGEA AAIHTGVLRCRVLDLFSAEGVNHAILDVSASAHMPDTLEMPYRPDVFQIAGDASLRSAQQPAVRLEGESYALAGKAGEKA YTYRLGAPTCLAGDRLGDYSFAEPLAVGDELVFDDMAHYTMVKTTFFNGVRHPDIAVQRKDGSVETVRRFSYEDFEARLG >Mature_399_residues SAFIISLPALERNALILRDVADAAGCRIALALKGFSCWPCFEALSPWLDGCCASGLWEARLARRRFGKHVLTYSPGHAPE EIAELAEISSHLDFNSLTQWSRFREEVMRHPRFVSGELKCGLRVNPQCSTGHTPIYDPCAPGSRLGVTPDMMQGADLSGI SGLHFHTLCEQGADDLAVTMEAVERHFGHLLSRPEISWLNMGGGHWITKPDYDRKLLAALIRRIRERYGVEVWLEPGEAA AIHTGVLRCRVLDLFSAEGVNHAILDVSASAHMPDTLEMPYRPDVFQIAGDASLRSAQQPAVRLEGESYALAGKAGEKAY TYRLGAPTCLAGDRLGDYSFAEPLAVGDELVFDDMAHYTMVKTTFFNGVRHPDIAVQRKDGSVETVRRFSYEDFEARLG
Specific function: Unknown
COG id: COG0019
COG function: function code E; Diaminopimelate decarboxylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44193; Mature: 44062
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAFIISLPALERNALILRDVADAAGCRIALALKGFSCWPCFEALSPWLDGCCASGLWEA CCEEEEECCCCCCCCEEEEHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHH RLARRRFGKHVLTYSPGHAPEEIAELAEISSHLDFNSLTQWSRFREEVMRHPRFVSGELK HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEECCCEE CGLRVNPQCSTGHTPIYDPCAPGSRLGVTPDMMQGADLSGISGLHFHTLCEQGADDLAVT ECEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHH MEAVERHFGHLLSRPEISWLNMGGGHWITKPDYDRKLLAALIRRIRERYGVEVWLEPGEA HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCC AAIHTGVLRCRVLDLFSAEGVNHAILDVSASAHMPDTLEMPYRPDVFQIAGDASLRSAQQ HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHCCC PAVRLEGESYALAGKAGEKAYTYRLGAPTCLAGDRLGDYSFAEPLAVGDELVFDDMAHYT CCEEECCCCEEEECCCCCCEEEEECCCCCEECCCCCCCCCCCCCHHCCCHHHHHHHHHHH MVKTTFFNGVRHPDIAVQRKDGSVETVRRFSYEDFEARLG HHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCHHHHHCCC >Mature Secondary Structure SAFIISLPALERNALILRDVADAAGCRIALALKGFSCWPCFEALSPWLDGCCASGLWEA CEEEEECCCCCCCCEEEEHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHH RLARRRFGKHVLTYSPGHAPEEIAELAEISSHLDFNSLTQWSRFREEVMRHPRFVSGELK HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEECCCEE CGLRVNPQCSTGHTPIYDPCAPGSRLGVTPDMMQGADLSGISGLHFHTLCEQGADDLAVT ECEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHH MEAVERHFGHLLSRPEISWLNMGGGHWITKPDYDRKLLAALIRRIRERYGVEVWLEPGEA HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCC AAIHTGVLRCRVLDLFSAEGVNHAILDVSASAHMPDTLEMPYRPDVFQIAGDASLRSAQQ HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHCCC PAVRLEGESYALAGKAGEKAYTYRLGAPTCLAGDRLGDYSFAEPLAVGDELVFDDMAHYT CCEEECCCCEEEECCCCCCEEEEECCCCCEECCCCCCCCCCCCCHHCCCHHHHHHHHHHH MVKTTFFNGVRHPDIAVQRKDGSVETVRRFSYEDFEARLG HHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA