Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is leuS [H]
Identifier: 187736142
GI number: 187736142
Start: 1997261
End: 1999834
Strand: Reverse
Name: leuS [H]
Synonym: Amuc_1654
Alternate gene names: 187736142
Gene position: 1999834-1997261 (Counterclockwise)
Preceding gene: 187736144
Following gene: 187736141
Centisome position: 75.07
GC content: 57.77
Gene sequence:
>2574_bases ATGTCCGAGCGCAAGAAACCATATCCCTTTGACGTTTTTGAACCTAAATGGCAACAGATCTGGGACGAGAGGAAAACCTT TAAAGTAAATAACCCCGGAGAAGAGGGCTTTGATGCGTCCAAACCCAAATACTACGTGCTGGACATGTTCCCCTACCCCA GCGGGGCGGGCCTGCATGTGGGCCATCCGGAAGGGTACACCGCCACGGACATTGTAGCGCGTTTCAAACGCATGAACGGC TTCAACGTGCTCCATCCCATGGGGTGGGACTCCTTCGGCCTTCCGGCGGAACAATACGCCATTAAAACCGGACAGCACCC CTCCGTCACTACCTTCCGGAATATAGACAACTTCCGCCGCCAGCTCAAAATGCTGGGGTTCTCTTACGACTGGGACCGGG AAATAGCAACAACGGACCATGAATACGTCCGTTGGACCCAGTGGATATTCCTCCAGCTTTACAACTCCTACTACAACAAG GAACTGAAAAAGGCGCGCCCCGTTTCCGAACTGGAGGAACAGGGATTGAGCCGGGAAGAAATCGACCAGCGCCGGCTGGC CTACGTAGCGGAAGCTGCCGTCAACTGGTCCCCGGACCTGGGGACCGTCCTTGCCAATGAGGAAGTGGAGGAATGGAAAT CCAAGGGACACCGCGTGGAACGCCGCCCCCTGCGCCAGTGGATGCTGCGCATCACGGACTACGCGGAACGCCTCATTGAC GAGCTGGAGCCCCTGGACTGGCCGGAATCCATTAAACTGCTTCAGCGCAACTGGATAGGCAAATCGGAAGGTGCGGAAGT GGACTTCACCTTGGACGGAGAAACGATCACTGTTTACACCACCAGGCCGGACACCCTCTTTGGAGCCACCTACATGGTTC TTTCCCCGGAGCACCCTCTGGTAGATACCGTCACCACGCCGGAACAGAAACATGCTGTGGAACAATACCGCGCCCAGTGC GCCTCCAAAAGCGACCTGGAACGCACGGACCTCTCCAAGGAAAAAACAGGGGTCTTCACCGGAGCCTATGCCGTCAATCC GGTCAATGGAAAACAAATTCCCGTCTGGATCGCGGACTATGTGCTGATGGGTTACGGAACCGGAGCCATCATGGCCGTCC CCGCCCATGACGAACGCGACTTCGCCTTTGCCCAGGTCTTCGGCCTGCCCATACTCCAGGTAGTTCAGCCGCCCAGTGAA GACACGGACTGGCGCGGCTTCTGCGGTTATGAAGGTTCCAGCGTGAACTCCGGCTTCCTGACCGGGCTGCCTACTCCGGA AGCCAAGGAAAAAATGATCCTCTGGCTGGAAGAAAACGGCAAGGGACGCCGCAAAGTAAACTACAAGCTGCGCGACTGGC TCTTCTCCCGCCAGCGTTACTGGGGGGAACCATTCCCCATCGTATGGGAAGACGGTCGCCACCGCGCCCTGCCGGAAAGC GAACTCCCCGTACTCCAGCCGGATCTGGACGACTTCGCCCCCACGGGAGACCCCCGCGGCCCGCTGGTCAAGGCTGCGGA ATGGATAGCCTACACGCCCACAGCCCACCGGGAAACAAACACCATGCCCCAATGGGCCGGCTCCTGCTGGTACTACCTGC GTTACCTGGATCCGGCCAACACGGAACGCTTCGTCAGCCGGGAAGCGGAACAATACTGGATGGGCTCCGCCGGCTCCCCC GGAGGCGTGGACCTGTACGTGGGCGGCACGGAACACGCCGTGCTCCACCTTCTCTATGCCCGCTTCTGGCACAAGGTGCT CTTTGACCTGGGCTACCTCAGCACCAATGAACCCTTCCAAAAACTCGTCAACCAGGGGCTCATCCTAGGGGAAGACGGCC AGAAAATGTCCAAATCCCGCGGCAACGTCGTCAATCCGGACGACATCGTCCGCGAATATGGCGCGGACTCCCTGCGGTTA TATGAAATGTTCATGGGCCCTCTCAAGGACGTGAAACCTTGGGCAACCAAAGGTGTGGAAGGCATTTCCCGCTTCCTGGC CCGCGTCTGGCGCGTGGCCTTCCGGGAAAATCAGGAAGGAGAATGGGAAATCAACTCCAAACTGGTGGAGAACGCTCCGG AAGCCGGGGTGCTTGCCGTACGCAAGGAATTGCACAAAACCATTAAAAAAGTGACGGAGGACATCAATGGCATGTCCTTC AACACCGCCATCGCGAAAATGATGGAATGCACCAATGCCATGACCTCCGCGGATGTGGTGGACGTTCAGGACTATGATGC TTTCCTGACTCTGCTGAATCCCTTTGCCCCCCACCTTACGGAAGAAATACACAGCCGCCTGCAAACAGCCTTCCCGGCTC TGGCCCAGACGCAGCTTTGCCAGAAAAGCTGGCCTGAATGGGAGGAAGCCCTGCTGGAGGAAAATACCGTTCCCATGGTC ATCCAGGTGAACGGCAAGCTGAGGGACAAACTGGAAGTGCCCAAGGACATCTCCCGGGAAGAACTGGAAAAACAGGCCCT GGCTTCCGCCAAGGTGAAAACCTTCCTGGACGGCGTCACTGTGCGCAAGGTAATTGTCGTACCCGGCCGCCTCGTCAACA TTGTAGCCAACTGA
Upstream 100 bases:
>100_bases CCGAAAAACGGCATCATGCCCCAGGAGCATTGGAAGCGCCTGCACTCCGCCGGGTTTAGGCTTGATTGACCCGCGGGCGG AGTATACATTCCCTCCCGTC
Downstream 100 bases:
>100_bases CATCCCGAAAAGCCTCCCTCAGCCATGACCATAATCTCCCCGTCCCTGCTGGCCGCTGATTTCTCCCGCATTGGGGAGGA AGCGCGGCGGGCCTTTGACG
Product: leucyl-tRNA synthetase
Products: NA
Alternate protein names: Leucine--tRNA ligase; LeuRS [H]
Number of amino acids: Translated: 857; Mature: 856
Protein sequence:
>857_residues MSERKKPYPFDVFEPKWQQIWDERKTFKVNNPGEEGFDASKPKYYVLDMFPYPSGAGLHVGHPEGYTATDIVARFKRMNG FNVLHPMGWDSFGLPAEQYAIKTGQHPSVTTFRNIDNFRRQLKMLGFSYDWDREIATTDHEYVRWTQWIFLQLYNSYYNK ELKKARPVSELEEQGLSREEIDQRRLAYVAEAAVNWSPDLGTVLANEEVEEWKSKGHRVERRPLRQWMLRITDYAERLID ELEPLDWPESIKLLQRNWIGKSEGAEVDFTLDGETITVYTTRPDTLFGATYMVLSPEHPLVDTVTTPEQKHAVEQYRAQC ASKSDLERTDLSKEKTGVFTGAYAVNPVNGKQIPVWIADYVLMGYGTGAIMAVPAHDERDFAFAQVFGLPILQVVQPPSE DTDWRGFCGYEGSSVNSGFLTGLPTPEAKEKMILWLEENGKGRRKVNYKLRDWLFSRQRYWGEPFPIVWEDGRHRALPES ELPVLQPDLDDFAPTGDPRGPLVKAAEWIAYTPTAHRETNTMPQWAGSCWYYLRYLDPANTERFVSREAEQYWMGSAGSP GGVDLYVGGTEHAVLHLLYARFWHKVLFDLGYLSTNEPFQKLVNQGLILGEDGQKMSKSRGNVVNPDDIVREYGADSLRL YEMFMGPLKDVKPWATKGVEGISRFLARVWRVAFRENQEGEWEINSKLVENAPEAGVLAVRKELHKTIKKVTEDINGMSF NTAIAKMMECTNAMTSADVVDVQDYDAFLTLLNPFAPHLTEEIHSRLQTAFPALAQTQLCQKSWPEWEEALLEENTVPMV IQVNGKLRDKLEVPKDISREELEKQALASAKVKTFLDGVTVRKVIVVPGRLVNIVAN
Sequences:
>Translated_857_residues MSERKKPYPFDVFEPKWQQIWDERKTFKVNNPGEEGFDASKPKYYVLDMFPYPSGAGLHVGHPEGYTATDIVARFKRMNG FNVLHPMGWDSFGLPAEQYAIKTGQHPSVTTFRNIDNFRRQLKMLGFSYDWDREIATTDHEYVRWTQWIFLQLYNSYYNK ELKKARPVSELEEQGLSREEIDQRRLAYVAEAAVNWSPDLGTVLANEEVEEWKSKGHRVERRPLRQWMLRITDYAERLID ELEPLDWPESIKLLQRNWIGKSEGAEVDFTLDGETITVYTTRPDTLFGATYMVLSPEHPLVDTVTTPEQKHAVEQYRAQC ASKSDLERTDLSKEKTGVFTGAYAVNPVNGKQIPVWIADYVLMGYGTGAIMAVPAHDERDFAFAQVFGLPILQVVQPPSE DTDWRGFCGYEGSSVNSGFLTGLPTPEAKEKMILWLEENGKGRRKVNYKLRDWLFSRQRYWGEPFPIVWEDGRHRALPES ELPVLQPDLDDFAPTGDPRGPLVKAAEWIAYTPTAHRETNTMPQWAGSCWYYLRYLDPANTERFVSREAEQYWMGSAGSP GGVDLYVGGTEHAVLHLLYARFWHKVLFDLGYLSTNEPFQKLVNQGLILGEDGQKMSKSRGNVVNPDDIVREYGADSLRL YEMFMGPLKDVKPWATKGVEGISRFLARVWRVAFRENQEGEWEINSKLVENAPEAGVLAVRKELHKTIKKVTEDINGMSF NTAIAKMMECTNAMTSADVVDVQDYDAFLTLLNPFAPHLTEEIHSRLQTAFPALAQTQLCQKSWPEWEEALLEENTVPMV IQVNGKLRDKLEVPKDISREELEKQALASAKVKTFLDGVTVRKVIVVPGRLVNIVAN >Mature_856_residues SERKKPYPFDVFEPKWQQIWDERKTFKVNNPGEEGFDASKPKYYVLDMFPYPSGAGLHVGHPEGYTATDIVARFKRMNGF NVLHPMGWDSFGLPAEQYAIKTGQHPSVTTFRNIDNFRRQLKMLGFSYDWDREIATTDHEYVRWTQWIFLQLYNSYYNKE LKKARPVSELEEQGLSREEIDQRRLAYVAEAAVNWSPDLGTVLANEEVEEWKSKGHRVERRPLRQWMLRITDYAERLIDE LEPLDWPESIKLLQRNWIGKSEGAEVDFTLDGETITVYTTRPDTLFGATYMVLSPEHPLVDTVTTPEQKHAVEQYRAQCA SKSDLERTDLSKEKTGVFTGAYAVNPVNGKQIPVWIADYVLMGYGTGAIMAVPAHDERDFAFAQVFGLPILQVVQPPSED TDWRGFCGYEGSSVNSGFLTGLPTPEAKEKMILWLEENGKGRRKVNYKLRDWLFSRQRYWGEPFPIVWEDGRHRALPESE LPVLQPDLDDFAPTGDPRGPLVKAAEWIAYTPTAHRETNTMPQWAGSCWYYLRYLDPANTERFVSREAEQYWMGSAGSPG GVDLYVGGTEHAVLHLLYARFWHKVLFDLGYLSTNEPFQKLVNQGLILGEDGQKMSKSRGNVVNPDDIVREYGADSLRLY EMFMGPLKDVKPWATKGVEGISRFLARVWRVAFRENQEGEWEINSKLVENAPEAGVLAVRKELHKTIKKVTEDINGMSFN TAIAKMMECTNAMTSADVVDVQDYDAFLTLLNPFAPHLTEEIHSRLQTAFPALAQTQLCQKSWPEWEEALLEENTVPMVI QVNGKLRDKLEVPKDISREELEKQALASAKVKTFLDGVTVRKVIVVPGRLVNIVAN
Specific function: Unknown
COG id: COG0495
COG function: function code J; Leucyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI7661872, Length=921, Percent_Identity=32.6818675352877, Blast_Score=421, Evalue=1e-117, Organism=Escherichia coli, GI1786861, Length=918, Percent_Identity=39.3246187363834, Blast_Score=602, Evalue=1e-173, Organism=Caenorhabditis elegans, GI71997517, Length=809, Percent_Identity=27.9357231149567, Blast_Score=268, Evalue=1e-71, Organism=Caenorhabditis elegans, GI71997510, Length=809, Percent_Identity=27.9357231149567, Blast_Score=268, Evalue=1e-71, Organism=Caenorhabditis elegans, GI212645227, Length=375, Percent_Identity=26.1333333333333, Blast_Score=104, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6323414, Length=850, Percent_Identity=34, Blast_Score=414, Evalue=1e-116, Organism=Drosophila melanogaster, GI21355409, Length=841, Percent_Identity=31.7479191438763, Blast_Score=318, Evalue=1e-86,
Paralogues:
None
Copy number: 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR002300 - InterPro: IPR002302 - InterPro: IPR014729 - InterPro: IPR009080 - InterPro: IPR013155 - InterPro: IPR009008 [H]
Pfam domain/function: PF08264 Anticodon_1; PF00133 tRNA-synt_1 [H]
EC number: =6.1.1.4 [H]
Molecular weight: Translated: 98084; Mature: 97953
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSERKKPYPFDVFEPKWQQIWDERKTFKVNNPGEEGFDASKPKYYVLDMFPYPSGAGLHV CCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEC GHPEGYTATDIVARFKRMNGFNVLHPMGWDSFGLPAEQYAIKTGQHPSVTTFRNIDNFRR CCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHH QLKMLGFSYDWDREIATTDHEYVRWTQWIFLQLYNSYYNKELKKARPVSELEEQGLSREE HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHH IDQRRLAYVAEAAVNWSPDLGTVLANEEVEEWKSKGHRVERRPLRQWMLRITDYAERLID HHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH ELEPLDWPESIKLLQRNWIGKSEGAEVDFTLDGETITVYTTRPDTLFGATYMVLSPEHPL HCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCC VDTVTTPEQKHAVEQYRAQCASKSDLERTDLSKEKTGVFTGAYAVNPVNGKQIPVWIADY CCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHCCEEECCEEECCCCCCCCHHHHHHH VLMGYGTGAIMAVPAHDERDFAFAQVFGLPILQVVQPPSEDTDWRGFCGYEGSSVNSGFL HHHHCCCCEEEEECCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCE TGLPTPEAKEKMILWLEENGKGRRKVNYKLRDWLFSRQRYWGEPFPIVWEDGRHRALPES ECCCCCCCCCEEEEEEECCCCCCEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC ELPVLQPDLDDFAPTGDPRGPLVKAAEWIAYTPTAHRETNTMPQWAGSCWYYLRYLDPAN CCCCCCCCHHHCCCCCCCCCCHHHHHHHEEECCCCCCCCCCCCHHHCCCEEEEEECCCCC TERFVSREAEQYWMGSAGSPGGVDLYVGGTEHAVLHLLYARFWHKVLFDLGYLSTNEPFQ HHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH KLVNQGLILGEDGQKMSKSRGNVVNPDDIVREYGADSLRLYEMFMGPLKDVKPWATKGVE HHHHCCEEECCCCHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH GISRFLARVWRVAFRENQEGEWEINSKLVENAPEAGVLAVRKELHKTIKKVTEDINGMSF HHHHHHHHHHHHHHHCCCCCCEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH NTAIAKMMECTNAMTSADVVDVQDYDAFLTLLNPFAPHLTEEIHSRLQTAFPALAQTQLC HHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKSWPEWEEALLEENTVPMVIQVNGKLRDKLEVPKDISREELEKQALASAKVKTFLDGVT HHCCCHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH VRKVIVVPGRLVNIVAN EEEEEECCCCEEEEECC >Mature Secondary Structure SERKKPYPFDVFEPKWQQIWDERKTFKVNNPGEEGFDASKPKYYVLDMFPYPSGAGLHV CCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEC GHPEGYTATDIVARFKRMNGFNVLHPMGWDSFGLPAEQYAIKTGQHPSVTTFRNIDNFRR CCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHH QLKMLGFSYDWDREIATTDHEYVRWTQWIFLQLYNSYYNKELKKARPVSELEEQGLSREE HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHH IDQRRLAYVAEAAVNWSPDLGTVLANEEVEEWKSKGHRVERRPLRQWMLRITDYAERLID HHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH ELEPLDWPESIKLLQRNWIGKSEGAEVDFTLDGETITVYTTRPDTLFGATYMVLSPEHPL HCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCC VDTVTTPEQKHAVEQYRAQCASKSDLERTDLSKEKTGVFTGAYAVNPVNGKQIPVWIADY CCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHCCEEECCEEECCCCCCCCHHHHHHH VLMGYGTGAIMAVPAHDERDFAFAQVFGLPILQVVQPPSEDTDWRGFCGYEGSSVNSGFL HHHHCCCCEEEEECCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCE TGLPTPEAKEKMILWLEENGKGRRKVNYKLRDWLFSRQRYWGEPFPIVWEDGRHRALPES ECCCCCCCCCEEEEEEECCCCCCEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC ELPVLQPDLDDFAPTGDPRGPLVKAAEWIAYTPTAHRETNTMPQWAGSCWYYLRYLDPAN CCCCCCCCHHHCCCCCCCCCCHHHHHHHEEECCCCCCCCCCCCHHHCCCEEEEEECCCCC TERFVSREAEQYWMGSAGSPGGVDLYVGGTEHAVLHLLYARFWHKVLFDLGYLSTNEPFQ HHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH KLVNQGLILGEDGQKMSKSRGNVVNPDDIVREYGADSLRLYEMFMGPLKDVKPWATKGVE HHHHCCEEECCCCHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH GISRFLARVWRVAFRENQEGEWEINSKLVENAPEAGVLAVRKELHKTIKKVTEDINGMSF HHHHHHHHHHHHHHHCCCCCCEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH NTAIAKMMECTNAMTSADVVDVQDYDAFLTLLNPFAPHLTEEIHSRLQTAFPALAQTQLC HHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKSWPEWEEALLEENTVPMVIQVNGKLRDKLEVPKDISREELEKQALASAKVKTFLDGVT HHCCCHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH VRKVIVVPGRLVNIVAN EEEEEECCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA