Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

Click here to switch to the map view.

The map label for this gene is psd [H]

Identifier: 187736140

GI number: 187736140

Start: 1995548

End: 1996444

Strand: Direct

Name: psd [H]

Synonym: Amuc_1652

Alternate gene names: 187736140

Gene position: 1995548-1996444 (Clockwise)

Preceding gene: 187736139

Following gene: 187736143

Centisome position: 74.91

GC content: 57.41

Gene sequence:

>897_bases
ATGGAGGGCATACGCTATTACAACCGCTATACGGGCAGGGAGGAACGGGAACAGGTACCGGGGGAGAAGTATATGCAATG
GATTTACGGCACTGCTTCGGGGAAGGCGGCACTGCATGTCCTGATTAAACGCGGCGTTTTTTCCCGTCTGCTGGGTTGGT
TGAAGAATCGCCCTTCCAGCGCCCGCTCCATTCCCTCCTTTGTGGAGGAGTACGGCATTAATATGGAAGATTCTCTCAAG
GGAATGGGGGAGTTCAGGCATTTCAACGATTTTTTCTACCGCCGCCTGAAACCGGGAGCTCGCCCTCTGGCCGGCGGGGA
GGATACGGCCGTTTTTCCCGCGGATGCCCGGCACATGGGCTGGGAACGCGCCGACCGAATTAAGAATGTTTTCGTGAAAG
GGCAGCGTTTTGACCTGCCTTCCCTTCTGGGGAGCGACACCTTGGCTGAGCGGTATGCGGCTGGCGCCGTCGTCTTGTCG
CGCCTGTGCCCTACGGATTACCACCGGTTTCATTTTCCAGTGTCCGGGGTGCCCGGCCCCTGGACGAAGCTGGGAGGCCC
GCTGGCAAGCGTGTCTCCGTATTGCCTGCGCGGCCGTCTGGCGTGGCTATGGACTAATAAAAGGAATTTGACCCTGATCC
GGTCAGAGTTGTGGGGAGAGGTCGCCATGCTGGAGGTGGGGGCTACCGGAGTTGGGTTGATTGAAGAGACGTATGTTCCG
GGTGTTTTCTCCGCAAGAGGGGCGGAGAAGGGGTATTTTGCCTTTGGTGGCTCCACGGTAATGTGCTTTTTTGAACCGGG
AAAAGTCAGTTTGGCTTCCGATTTGTTGGAAAAGACGGAAGAAGGCCTGGAGCTGTTTGCCCGGCAGGGTGATATGATGG
GCACGGCAGCGACATAG

Upstream 100 bases:

>100_bases
AACGGTGAGGAGGAGCGAGAAGCACCCATGCTGGAAACGGGAGGCAGGGATATTCTTTCGGCTGGACAAACGGAGGGACG
GAAGACATTCTAGGCGTTCC

Downstream 100 bases:

>100_bases
TTTTTGGGCAGGCGTGCCTGTCCCGCAATGTTGTGAATAGGGCTCTTCCCTAGAGCCTGATGACGGAATACCGGGGATGG
ACTCCGGCGTTTCAGGGCGG

Product: phosphatidylserine decarboxylase-related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MEGIRYYNRYTGREEREQVPGEKYMQWIYGTASGKAALHVLIKRGVFSRLLGWLKNRPSSARSIPSFVEEYGINMEDSLK
GMGEFRHFNDFFYRRLKPGARPLAGGEDTAVFPADARHMGWERADRIKNVFVKGQRFDLPSLLGSDTLAERYAAGAVVLS
RLCPTDYHRFHFPVSGVPGPWTKLGGPLASVSPYCLRGRLAWLWTNKRNLTLIRSELWGEVAMLEVGATGVGLIEETYVP
GVFSARGAEKGYFAFGGSTVMCFFEPGKVSLASDLLEKTEEGLELFARQGDMMGTAAT

Sequences:

>Translated_298_residues
MEGIRYYNRYTGREEREQVPGEKYMQWIYGTASGKAALHVLIKRGVFSRLLGWLKNRPSSARSIPSFVEEYGINMEDSLK
GMGEFRHFNDFFYRRLKPGARPLAGGEDTAVFPADARHMGWERADRIKNVFVKGQRFDLPSLLGSDTLAERYAAGAVVLS
RLCPTDYHRFHFPVSGVPGPWTKLGGPLASVSPYCLRGRLAWLWTNKRNLTLIRSELWGEVAMLEVGATGVGLIEETYVP
GVFSARGAEKGYFAFGGSTVMCFFEPGKVSLASDLLEKTEEGLELFARQGDMMGTAAT
>Mature_298_residues
MEGIRYYNRYTGREEREQVPGEKYMQWIYGTASGKAALHVLIKRGVFSRLLGWLKNRPSSARSIPSFVEEYGINMEDSLK
GMGEFRHFNDFFYRRLKPGARPLAGGEDTAVFPADARHMGWERADRIKNVFVKGQRFDLPSLLGSDTLAERYAAGAVVLS
RLCPTDYHRFHFPVSGVPGPWTKLGGPLASVSPYCLRGRLAWLWTNKRNLTLIRSELWGEVAMLEVGATGVGLIEETYVP
GVFSARGAEKGYFAFGGSTVMCFFEPGKVSLASDLLEKTEEGLELFARQGDMMGTAAT

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790604, Length=270, Percent_Identity=29.2592592592593, Blast_Score=99, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6321609, Length=240, Percent_Identity=30.4166666666667, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 33244; Mature: 33244

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGIRYYNRYTGREEREQVPGEKYMQWIYGTASGKAALHVLIKRGVFSRLLGWLKNRPSS
CCCCHHHHHHCCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
ARSIPSFVEEYGINMEDSLKGMGEFRHFNDFFYRRLKPGARPLAGGEDTAVFPADARHMG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHCC
WERADRIKNVFVKGQRFDLPSLLGSDTLAERYAAGAVVLSRLCPTDYHRFHFPVSGVPGP
HHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC
WTKLGGPLASVSPYCLRGRLAWLWTNKRNLTLIRSELWGEVAMLEVGATGVGLIEETYVP
HHHHCCCHHHCCCHHHCCEEEEEEECCCCEEEEHHHHCCCEEEEEECCCCCCHHHHHCCC
GVFSARGAEKGYFAFGGSTVMCFFEPGKVSLASDLLEKTEEGLELFARQGDMMGTAAT
CCHHCCCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MEGIRYYNRYTGREEREQVPGEKYMQWIYGTASGKAALHVLIKRGVFSRLLGWLKNRPSS
CCCCHHHHHHCCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
ARSIPSFVEEYGINMEDSLKGMGEFRHFNDFFYRRLKPGARPLAGGEDTAVFPADARHMG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHCC
WERADRIKNVFVKGQRFDLPSLLGSDTLAERYAAGAVVLSRLCPTDYHRFHFPVSGVPGP
HHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC
WTKLGGPLASVSPYCLRGRLAWLWTNKRNLTLIRSELWGEVAMLEVGATGVGLIEETYVP
HHHHCCCHHHCCCHHHCCEEEEEEECCCCEEEEHHHHCCCEEEEEECCCCCCHHHHHCCC
GVFSARGAEKGYFAFGGSTVMCFFEPGKVSLASDLLEKTEEGLELFARQGDMMGTAAT
CCHHCCCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA