Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is psd [H]
Identifier: 187736140
GI number: 187736140
Start: 1995548
End: 1996444
Strand: Direct
Name: psd [H]
Synonym: Amuc_1652
Alternate gene names: 187736140
Gene position: 1995548-1996444 (Clockwise)
Preceding gene: 187736139
Following gene: 187736143
Centisome position: 74.91
GC content: 57.41
Gene sequence:
>897_bases ATGGAGGGCATACGCTATTACAACCGCTATACGGGCAGGGAGGAACGGGAACAGGTACCGGGGGAGAAGTATATGCAATG GATTTACGGCACTGCTTCGGGGAAGGCGGCACTGCATGTCCTGATTAAACGCGGCGTTTTTTCCCGTCTGCTGGGTTGGT TGAAGAATCGCCCTTCCAGCGCCCGCTCCATTCCCTCCTTTGTGGAGGAGTACGGCATTAATATGGAAGATTCTCTCAAG GGAATGGGGGAGTTCAGGCATTTCAACGATTTTTTCTACCGCCGCCTGAAACCGGGAGCTCGCCCTCTGGCCGGCGGGGA GGATACGGCCGTTTTTCCCGCGGATGCCCGGCACATGGGCTGGGAACGCGCCGACCGAATTAAGAATGTTTTCGTGAAAG GGCAGCGTTTTGACCTGCCTTCCCTTCTGGGGAGCGACACCTTGGCTGAGCGGTATGCGGCTGGCGCCGTCGTCTTGTCG CGCCTGTGCCCTACGGATTACCACCGGTTTCATTTTCCAGTGTCCGGGGTGCCCGGCCCCTGGACGAAGCTGGGAGGCCC GCTGGCAAGCGTGTCTCCGTATTGCCTGCGCGGCCGTCTGGCGTGGCTATGGACTAATAAAAGGAATTTGACCCTGATCC GGTCAGAGTTGTGGGGAGAGGTCGCCATGCTGGAGGTGGGGGCTACCGGAGTTGGGTTGATTGAAGAGACGTATGTTCCG GGTGTTTTCTCCGCAAGAGGGGCGGAGAAGGGGTATTTTGCCTTTGGTGGCTCCACGGTAATGTGCTTTTTTGAACCGGG AAAAGTCAGTTTGGCTTCCGATTTGTTGGAAAAGACGGAAGAAGGCCTGGAGCTGTTTGCCCGGCAGGGTGATATGATGG GCACGGCAGCGACATAG
Upstream 100 bases:
>100_bases AACGGTGAGGAGGAGCGAGAAGCACCCATGCTGGAAACGGGAGGCAGGGATATTCTTTCGGCTGGACAAACGGAGGGACG GAAGACATTCTAGGCGTTCC
Downstream 100 bases:
>100_bases TTTTTGGGCAGGCGTGCCTGTCCCGCAATGTTGTGAATAGGGCTCTTCCCTAGAGCCTGATGACGGAATACCGGGGATGG ACTCCGGCGTTTCAGGGCGG
Product: phosphatidylserine decarboxylase-related
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MEGIRYYNRYTGREEREQVPGEKYMQWIYGTASGKAALHVLIKRGVFSRLLGWLKNRPSSARSIPSFVEEYGINMEDSLK GMGEFRHFNDFFYRRLKPGARPLAGGEDTAVFPADARHMGWERADRIKNVFVKGQRFDLPSLLGSDTLAERYAAGAVVLS RLCPTDYHRFHFPVSGVPGPWTKLGGPLASVSPYCLRGRLAWLWTNKRNLTLIRSELWGEVAMLEVGATGVGLIEETYVP GVFSARGAEKGYFAFGGSTVMCFFEPGKVSLASDLLEKTEEGLELFARQGDMMGTAAT
Sequences:
>Translated_298_residues MEGIRYYNRYTGREEREQVPGEKYMQWIYGTASGKAALHVLIKRGVFSRLLGWLKNRPSSARSIPSFVEEYGINMEDSLK GMGEFRHFNDFFYRRLKPGARPLAGGEDTAVFPADARHMGWERADRIKNVFVKGQRFDLPSLLGSDTLAERYAAGAVVLS RLCPTDYHRFHFPVSGVPGPWTKLGGPLASVSPYCLRGRLAWLWTNKRNLTLIRSELWGEVAMLEVGATGVGLIEETYVP GVFSARGAEKGYFAFGGSTVMCFFEPGKVSLASDLLEKTEEGLELFARQGDMMGTAAT >Mature_298_residues MEGIRYYNRYTGREEREQVPGEKYMQWIYGTASGKAALHVLIKRGVFSRLLGWLKNRPSSARSIPSFVEEYGINMEDSLK GMGEFRHFNDFFYRRLKPGARPLAGGEDTAVFPADARHMGWERADRIKNVFVKGQRFDLPSLLGSDTLAERYAAGAVVLS RLCPTDYHRFHFPVSGVPGPWTKLGGPLASVSPYCLRGRLAWLWTNKRNLTLIRSELWGEVAMLEVGATGVGLIEETYVP GVFSARGAEKGYFAFGGSTVMCFFEPGKVSLASDLLEKTEEGLELFARQGDMMGTAAT
Specific function: Unknown
COG id: COG0688
COG function: function code I; Phosphatidylserine decarboxylase
Gene ontology:
Cell location: Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790604, Length=270, Percent_Identity=29.2592592592593, Blast_Score=99, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6321609, Length=240, Percent_Identity=30.4166666666667, Blast_Score=116, Evalue=3e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003817 - InterPro: IPR005221 [H]
Pfam domain/function: PF02666 PS_Dcarbxylase [H]
EC number: =4.1.1.65 [H]
Molecular weight: Translated: 33244; Mature: 33244
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEGIRYYNRYTGREEREQVPGEKYMQWIYGTASGKAALHVLIKRGVFSRLLGWLKNRPSS CCCCHHHHHHCCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC ARSIPSFVEEYGINMEDSLKGMGEFRHFNDFFYRRLKPGARPLAGGEDTAVFPADARHMG HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHCC WERADRIKNVFVKGQRFDLPSLLGSDTLAERYAAGAVVLSRLCPTDYHRFHFPVSGVPGP HHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC WTKLGGPLASVSPYCLRGRLAWLWTNKRNLTLIRSELWGEVAMLEVGATGVGLIEETYVP HHHHCCCHHHCCCHHHCCEEEEEEECCCCEEEEHHHHCCCEEEEEECCCCCCHHHHHCCC GVFSARGAEKGYFAFGGSTVMCFFEPGKVSLASDLLEKTEEGLELFARQGDMMGTAAT CCHHCCCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MEGIRYYNRYTGREEREQVPGEKYMQWIYGTASGKAALHVLIKRGVFSRLLGWLKNRPSS CCCCHHHHHHCCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC ARSIPSFVEEYGINMEDSLKGMGEFRHFNDFFYRRLKPGARPLAGGEDTAVFPADARHMG HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHCC WERADRIKNVFVKGQRFDLPSLLGSDTLAERYAAGAVVLSRLCPTDYHRFHFPVSGVPGP HHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC WTKLGGPLASVSPYCLRGRLAWLWTNKRNLTLIRSELWGEVAMLEVGATGVGLIEETYVP HHHHCCCHHHCCCHHHCCEEEEEEECCCCEEEEHHHHCCCEEEEEECCCCCCHHHHHCCC GVFSARGAEKGYFAFGGSTVMCFFEPGKVSLASDLLEKTEEGLELFARQGDMMGTAAT CCHHCCCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA