Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is prc [H]
Identifier: 187736120
GI number: 187736120
Start: 1965361
End: 1967607
Strand: Reverse
Name: prc [H]
Synonym: Amuc_1631
Alternate gene names: 187736120
Gene position: 1967607-1965361 (Counterclockwise)
Preceding gene: 187736132
Following gene: 187736119
Centisome position: 73.86
GC content: 55.14
Gene sequence:
>2247_bases ATGGAAAAAAACGCACCCTTTTCCGTTATGAACATGCACTCATTCCGTTGGATTAGACTCACCGCATTCTCGGCCCTGGC CGCAGCCGCCATTACTTCCTGCGCCTCTGCGGCTACGGACTTCAACCAGGTGGGCAAGCAAATGTCCCTGCTGCTCCAGA ATTTCCACTTCTCCCGCAAAGAATTCAGCGATGAACTATCCACTAAATTCCTGGAAACCTACCTGCGCAAGGTAGACCCC AACAAAATATTCTTCACCCAGCAGGACGTAGACGCCCTCAAAAGAAAATACGGTAAGGAGCTGGACGACTACCTTATGTC CGGCCAGATGATGGATGCGGCCCAGGCCATGCACGCCCTTTACCGCCAGCGCGCCATGCAGCGCATCTCCTATGCGCGGG ATTTGCTGAAAAAGGGAGGCTTCACCTTTGACAAAGACAAGTCTATCGAACGTTCCCGCCGCAAAACAGCCGCGTGGCCC AAGGATGAGGCGGAAATGCAGCAGGTCTGGAAAGACATGGTGGAGGAACAGCTCCTGTCCGAAATCCTGCGCCGTGAAAC CGTAGCGCGCCTGGCCAAGGAACAGAACAAGCCCGATCCCCTGGCCAATGAAAAACCCGCGGAGGAAAAACTGCTTATGC GTTATGAACGCATTCAACGCAATATTCAGGAAACGGATCTGGAAGACGTAGCGGAAACACTGCTCAGCGCCGTAGCCTTG ACGTATGACCCGCATACGGATTACATGGGTGCGCGCCAGGTGGACCGTTTCAAAATCTCCATGGGTACGGAACTCACCGG CATCGGCGCCCTGTTGGGCAGTGAAGACGACGGTTCCACCAAAATTACCGGTATCGTTGTGGGAGGACCGGCTGACAAAT CCGGAGAATTGAAGCTGAACGACCGCATCGTTGCCATTGACTCCGACAACTCCGGAGAAATGGTGGATATCCTGTTCATG AAGCTGGACAAAGTGGTGGATATGATCCGCGGAGCCGAAAATACCCAGATGCGCCTGAAAGTAGAGCCGGCAGACGCCCC CGGACAGGCCAAAATCATTACGCTGACCCGCTCCAAGGTACCTCTGAAGGATGAACTTGCCAAAGGTGAAATCATTGAAC TTACCGGAGCTCCGGAAGGCAGGAACCGCATTGGCGTGCTGAGCCTTCCCTCCTTCTACGCAGACATGGAAGGCGGAGAC CGCCGCTGTGCCAAGGATGTCAAAAAAATCCTGGAACGGATGAACAAGGAAAATGTGGATGGCCTGGTAATTGACCTGCG TAGCAACGGCGGCGGTTCCCTGGAGGAAGTGCGCCTGATGACGGGCTTCTTTACCGGAAACGGCCCCGTGGTACAAATCA AGGACACCCGCGGCAACGTGGATATCAAATCCGCCCACAACCGCCAGAAACTCTTCAATGGCCCCATTGTGGTGCTCATT AATAAACTCAGCGCATCCGCCTCTGAAATTCTGGCCGCGGCCCTTCAGGATTACGGCCGCGCCGTGATTGTGGGGGATGA ATCCACCTTCGGGAAGGGGTCTGTGCAGCAGCCTGTGGACATCGGCCAATACCTGCCTTTCTTCGCGGCCAGAGACCGTG CGGGCCTGCTGAAAGTCACTACCCAGAAATTTTACCGTGTGGCGGGCGGCTCCACCCAGCTCAAAGGCGTGGAAAGCGAT ATCCAGCTTCCCACCGCTACGGCGGCATTCGAGCTGGGAGAAGACATTCTGGACTACGCGATGCCCTATGACCAGATTAC GCCCTGCACCAACTACAAAAAGGACTCCTCCATCGCGGCCATGCTGCCCGTGCTGAAAGATGCCAGCGCGAAGCGCGTGG AAAAAGACCGCGACCTCCAGATTGCCAGGGAAGATATCGCCATGATGAAACAGCGCATCAAGGACAACAAGCTTTCCCTG AACAAGAAAATCCGGGAACAGGAAAACTCCGCCCTGGAAGAACGCCGCAAATCCATCAACAAGGAACGTAAAATCCGCTT CGCGGAAATGGCCAGGGAAGACGCAACCAAATACAAAATTTACCGCCTGACGCTGGATGACGTCAACGCCAAGGAGCTGC CCCTGGCGGATCCGGAAAAAGACAATGAACAATTCATGCACCTGGCGGAAGACCCCACGGCAGAACTGGACGACTCCCCG GAATACCCCTCCGGCCTTGATCCGGAACTCCGCGAAGGCATCAACATCGTCCAGGATATGCTGAAGCTGGAATCCTCCGG AAAATAA
Upstream 100 bases:
>100_bases AAACAAGGAGAGCAAAATAGCGTCATGTGGACGTTTTATAAGATAGACAATCACCTGCAAATCAGTAACACTTACATCCC GGCGCCAGCTTTTTCCCCAA
Downstream 100 bases:
>100_bases CGGCTCGCTCCTCGCGAACCTCCTTGCCGCCCCGGTCCCATTCAGGGAACCGGGGTTCTTTTTTCCGAGGCAATTCCGGG AGCCGTGCCTCCCGAACAGC
Product: carboxyl-terminal protease
Products: NA
Alternate protein names: C-terminal-processing peptidase; PRC protein; Protease Re [H]
Number of amino acids: Translated: 748; Mature: 748
Protein sequence:
>748_residues MEKNAPFSVMNMHSFRWIRLTAFSALAAAAITSCASAATDFNQVGKQMSLLLQNFHFSRKEFSDELSTKFLETYLRKVDP NKIFFTQQDVDALKRKYGKELDDYLMSGQMMDAAQAMHALYRQRAMQRISYARDLLKKGGFTFDKDKSIERSRRKTAAWP KDEAEMQQVWKDMVEEQLLSEILRRETVARLAKEQNKPDPLANEKPAEEKLLMRYERIQRNIQETDLEDVAETLLSAVAL TYDPHTDYMGARQVDRFKISMGTELTGIGALLGSEDDGSTKITGIVVGGPADKSGELKLNDRIVAIDSDNSGEMVDILFM KLDKVVDMIRGAENTQMRLKVEPADAPGQAKIITLTRSKVPLKDELAKGEIIELTGAPEGRNRIGVLSLPSFYADMEGGD RRCAKDVKKILERMNKENVDGLVIDLRSNGGGSLEEVRLMTGFFTGNGPVVQIKDTRGNVDIKSAHNRQKLFNGPIVVLI NKLSASASEILAAALQDYGRAVIVGDESTFGKGSVQQPVDIGQYLPFFAARDRAGLLKVTTQKFYRVAGGSTQLKGVESD IQLPTATAAFELGEDILDYAMPYDQITPCTNYKKDSSIAAMLPVLKDASAKRVEKDRDLQIAREDIAMMKQRIKDNKLSL NKKIREQENSALEERRKSINKERKIRFAEMAREDATKYKIYRLTLDDVNAKELPLADPEKDNEQFMHLAEDPTAELDDSP EYPSGLDPELREGINIVQDMLKLESSGK
Sequences:
>Translated_748_residues MEKNAPFSVMNMHSFRWIRLTAFSALAAAAITSCASAATDFNQVGKQMSLLLQNFHFSRKEFSDELSTKFLETYLRKVDP NKIFFTQQDVDALKRKYGKELDDYLMSGQMMDAAQAMHALYRQRAMQRISYARDLLKKGGFTFDKDKSIERSRRKTAAWP KDEAEMQQVWKDMVEEQLLSEILRRETVARLAKEQNKPDPLANEKPAEEKLLMRYERIQRNIQETDLEDVAETLLSAVAL TYDPHTDYMGARQVDRFKISMGTELTGIGALLGSEDDGSTKITGIVVGGPADKSGELKLNDRIVAIDSDNSGEMVDILFM KLDKVVDMIRGAENTQMRLKVEPADAPGQAKIITLTRSKVPLKDELAKGEIIELTGAPEGRNRIGVLSLPSFYADMEGGD RRCAKDVKKILERMNKENVDGLVIDLRSNGGGSLEEVRLMTGFFTGNGPVVQIKDTRGNVDIKSAHNRQKLFNGPIVVLI NKLSASASEILAAALQDYGRAVIVGDESTFGKGSVQQPVDIGQYLPFFAARDRAGLLKVTTQKFYRVAGGSTQLKGVESD IQLPTATAAFELGEDILDYAMPYDQITPCTNYKKDSSIAAMLPVLKDASAKRVEKDRDLQIAREDIAMMKQRIKDNKLSL NKKIREQENSALEERRKSINKERKIRFAEMAREDATKYKIYRLTLDDVNAKELPLADPEKDNEQFMHLAEDPTAELDDSP EYPSGLDPELREGINIVQDMLKLESSGK >Mature_748_residues MEKNAPFSVMNMHSFRWIRLTAFSALAAAAITSCASAATDFNQVGKQMSLLLQNFHFSRKEFSDELSTKFLETYLRKVDP NKIFFTQQDVDALKRKYGKELDDYLMSGQMMDAAQAMHALYRQRAMQRISYARDLLKKGGFTFDKDKSIERSRRKTAAWP KDEAEMQQVWKDMVEEQLLSEILRRETVARLAKEQNKPDPLANEKPAEEKLLMRYERIQRNIQETDLEDVAETLLSAVAL TYDPHTDYMGARQVDRFKISMGTELTGIGALLGSEDDGSTKITGIVVGGPADKSGELKLNDRIVAIDSDNSGEMVDILFM KLDKVVDMIRGAENTQMRLKVEPADAPGQAKIITLTRSKVPLKDELAKGEIIELTGAPEGRNRIGVLSLPSFYADMEGGD RRCAKDVKKILERMNKENVDGLVIDLRSNGGGSLEEVRLMTGFFTGNGPVVQIKDTRGNVDIKSAHNRQKLFNGPIVVLI NKLSASASEILAAALQDYGRAVIVGDESTFGKGSVQQPVDIGQYLPFFAARDRAGLLKVTTQKFYRVAGGSTQLKGVESD IQLPTATAAFELGEDILDYAMPYDQITPCTNYKKDSSIAAMLPVLKDASAKRVEKDRDLQIAREDIAMMKQRIKDNKLSL NKKIREQENSALEERRKSINKERKIRFAEMAREDATKYKIYRLTLDDVNAKELPLADPEKDNEQFMHLAEDPTAELDDSP EYPSGLDPELREGINIVQDMLKLESSGK
Specific function: Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 (PBP3). May be involved in protection of the bacterium from thermal and osmotic stresses [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=757, Percent_Identity=33.6856010568032, Blast_Score=352, Evalue=6e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 - InterPro: IPR020992 [H]
Pfam domain/function: PF11818 DUF3340; PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 83862; Mature: 83862
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKNAPFSVMNMHSFRWIRLTAFSALAAAAITSCASAATDFNQVGKQMSLLLQNFHFSRK CCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH EFSDELSTKFLETYLRKVDPNKIFFTQQDVDALKRKYGKELDDYLMSGQMMDAAQAMHAL HHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHH YRQRAMQRISYARDLLKKGGFTFDKDKSIERSRRKTAAWPKDEAEMQQVWKDMVEEQLLS HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH EILRRETVARLAKEQNKPDPLANEKPAEEKLLMRYERIQRNIQETDLEDVAETLLSAVAL HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH TYDPHTDYMGARQVDRFKISMGTELTGIGALLGSEDDGSTKITGIVVGGPADKSGELKLN CCCCCCCCCCCCCHHHEEEECCCCHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCEEEC DRIVAIDSDNSGEMVDILFMKLDKVVDMIRGAENTQMRLKVEPADAPGQAKIITLTRSKV CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECCCC PLKDELAKGEIIELTGAPEGRNRIGVLSLPSFYADMEGGDRRCAKDVKKILERMNKENVD CCHHHHCCCCEEEEECCCCCCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC GLVIDLRSNGGGSLEEVRLMTGFFTGNGPVVQIKDTRGNVDIKSAHNRQKLFNGPIVVLI EEEEEEECCCCCCHHHHHEEHEEEECCCCEEEEECCCCCEEECCCCCHHHHHCCCEEEEE NKLSASASEILAAALQDYGRAVIVGDESTFGKGSVQQPVDIGQYLPFFAARDRAGLLKVT EHHCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHCCHHHCCCCCCCEEHH TQKFYRVAGGSTQLKGVESDIQLPTATAAFELGEDILDYAMPYDQITPCTNYKKDSSIAA HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHH MLPVLKDASAKRVEKDRDLQIAREDIAMMKQRIKDNKLSLNKKIREQENSALEERRKSIN HHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC KERKIRFAEMAREDATKYKIYRLTLDDVNAKELPLADPEKDNEQFMHLAEDPTAELDDSP HHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC EYPSGLDPELREGINIVQDMLKLESSGK CCCCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MEKNAPFSVMNMHSFRWIRLTAFSALAAAAITSCASAATDFNQVGKQMSLLLQNFHFSRK CCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH EFSDELSTKFLETYLRKVDPNKIFFTQQDVDALKRKYGKELDDYLMSGQMMDAAQAMHAL HHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHH YRQRAMQRISYARDLLKKGGFTFDKDKSIERSRRKTAAWPKDEAEMQQVWKDMVEEQLLS HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH EILRRETVARLAKEQNKPDPLANEKPAEEKLLMRYERIQRNIQETDLEDVAETLLSAVAL HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH TYDPHTDYMGARQVDRFKISMGTELTGIGALLGSEDDGSTKITGIVVGGPADKSGELKLN CCCCCCCCCCCCCHHHEEEECCCCHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCEEEC DRIVAIDSDNSGEMVDILFMKLDKVVDMIRGAENTQMRLKVEPADAPGQAKIITLTRSKV CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECCCC PLKDELAKGEIIELTGAPEGRNRIGVLSLPSFYADMEGGDRRCAKDVKKILERMNKENVD CCHHHHCCCCEEEEECCCCCCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC GLVIDLRSNGGGSLEEVRLMTGFFTGNGPVVQIKDTRGNVDIKSAHNRQKLFNGPIVVLI EEEEEEECCCCCCHHHHHEEHEEEECCCCEEEEECCCCCEEECCCCCHHHHHCCCEEEEE NKLSASASEILAAALQDYGRAVIVGDESTFGKGSVQQPVDIGQYLPFFAARDRAGLLKVT EHHCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHCCHHHCCCCCCCEEHH TQKFYRVAGGSTQLKGVESDIQLPTATAAFELGEDILDYAMPYDQITPCTNYKKDSSIAA HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHH MLPVLKDASAKRVEKDRDLQIAREDIAMMKQRIKDNKLSLNKKIREQENSALEERRKSIN HHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC KERKIRFAEMAREDATKYKIYRLTLDDVNAKELPLADPEKDNEQFMHLAEDPTAELDDSP HHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC EYPSGLDPELREGINIVQDMLKLESSGK CCCCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1856173; 1729701; 9097040; 9278503; 1447154; 10049386; 7499412; 8576225 [H]