Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736104
Identifier: 187736104
GI number: 187736104
Start: 1941434
End: 1942789
Strand: Direct
Name: 187736104
Synonym: Amuc_1615
Alternate gene names: NA
Gene position: 1941434-1942789 (Clockwise)
Preceding gene: 187736090
Following gene: 187736106
Centisome position: 72.87
GC content: 51.62
Gene sequence:
>1356_bases ATGTTGAAGCCGAGGAGAATTTTTGTCTTTCCCATTGCTGTAACATTTTCAGTATTATTTATTTTATATATTATTTCATG GTTTTCCCCTATTGCCGGGGATTCCTTTATTCACGACAGGACGGGGTACCTTGGGCAGTTTCATATCCGCCATGTCTGGA AGGCCTGCGTGGACAGTTACCTGTATTGGAATCCCAGGCTGGGGGAAATGGCTGCGTTTTTTATTACTTCTGCTCCCCGG CTGGTCTGGACGGTCTTGAATCCCGTGTTTGTGCTTGCCCTTGTTCTTGGCCTTTATGTGCTCGCTCTGGGGAGAATGCC CAATCTCCGGCGGGAGTGCGGAGCATGGACGTGGTTGTTTGCTTTAAGCATGTTCGTCTCAGCCGGGGTAACCGTTTATT ATGTCTGCCTGACACGCGCAGGCTCCATGAATTATGTGTGGACCGGATGCCTGATCGTATGGTTCATGAATATTTACAGA ACCAGGTGGGGGAAGCGGATAACCTCCCCTCGATGGGGCCTGTCCTCAGGATGTCTGATTTATGGGATTTTCTGCGGCGC CTGTAATGCAGGGGCGACGATAGGAATGGCGGCGGCGTTTTGCATCATGGCCGCGGTCGGCATGTTCCGGGACCGCAGGG TGGGCGCTTATGTATGGTGCGGGTTTGCCGGCGTTGCGTTGGGAGGCCTGTTTCTATTTGCCGCCCCCGGTTTGTATTCG CGGCTTGGCCATGATTTGGGAGCGAGTGAAGTTTTGAGGAAGGGCGGTTTTTGCGCCTATGCGGAGTCTTTCGGGATATT GCTTTATTACCACGCGAGGATGTTGTGTAAAATATATGCCGTTTCCGCAGTATTAACGGGATTTTTGTTGTTCAGCGGCA CGGAGCGGTGCCGGGAAGTAATCAGGAAGGAAAAGGAATCCTTCTTTTATATTCTTTTTTTATTGTTGCTGGGGTTCATC ATGTCCGTTTGTTATTTTCCGGTGTGCATTCCCGCCCATCATGTTCAGTTCGTGTCGTCCCTGCCCGTTTTGGCGGCGTC AACCGTGTTGTTCTCCGTATTGTACCGGAATGAGATCATGGTGCGCGGATTGCGCGCGGTGACTGTTTGCCTTGCCGGAG CGACTTTGTTTTTCGGGGTGGTGTTCGCCCTGGAGTATTATCATGTAGGCTCTCAGGCTTTCCAGAGAGAGGAACTGATT CATAAGGCCTTCCAGGAGGGGAATCTGGAACCGGAAGTTCCTTCCATCTCTCCTCTTTTCTTTGAAGGAAAAGTGTCCGG AACGGATGGGAATTGGGGAGGGCCGGATACCAACCGCCGGTTTGGCATCCGCAAACTGGTGGTGAAAAAGCCCTGA
Upstream 100 bases:
>100_bases GCAGCGGAGGAGAATCTTCTTCCTTTGTAGCCGGCCTCCCTGCGTAGTCCTTTTCGGGATTCACGTTATATGCGGATTCC TAATCCGTTAGGAAAAAAAT
Downstream 100 bases:
>100_bases GGGAAAATGGCTATTTGACTATGTTCCGGGGAGTGAAGTGCATTTCCTGTTCCTCGATGCCGAATTGCCAGGTGGCCGTT TGCCACATGTTGACAGCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 451; Mature: 451
Protein sequence:
>451_residues MLKPRRIFVFPIAVTFSVLFILYIISWFSPIAGDSFIHDRTGYLGQFHIRHVWKACVDSYLYWNPRLGEMAAFFITSAPR LVWTVLNPVFVLALVLGLYVLALGRMPNLRRECGAWTWLFALSMFVSAGVTVYYVCLTRAGSMNYVWTGCLIVWFMNIYR TRWGKRITSPRWGLSSGCLIYGIFCGACNAGATIGMAAAFCIMAAVGMFRDRRVGAYVWCGFAGVALGGLFLFAAPGLYS RLGHDLGASEVLRKGGFCAYAESFGILLYYHARMLCKIYAVSAVLTGFLLFSGTERCREVIRKEKESFFYILFLLLLGFI MSVCYFPVCIPAHHVQFVSSLPVLAASTVLFSVLYRNEIMVRGLRAVTVCLAGATLFFGVVFALEYYHVGSQAFQREELI HKAFQEGNLEPEVPSISPLFFEGKVSGTDGNWGGPDTNRRFGIRKLVVKKP
Sequences:
>Translated_451_residues MLKPRRIFVFPIAVTFSVLFILYIISWFSPIAGDSFIHDRTGYLGQFHIRHVWKACVDSYLYWNPRLGEMAAFFITSAPR LVWTVLNPVFVLALVLGLYVLALGRMPNLRRECGAWTWLFALSMFVSAGVTVYYVCLTRAGSMNYVWTGCLIVWFMNIYR TRWGKRITSPRWGLSSGCLIYGIFCGACNAGATIGMAAAFCIMAAVGMFRDRRVGAYVWCGFAGVALGGLFLFAAPGLYS RLGHDLGASEVLRKGGFCAYAESFGILLYYHARMLCKIYAVSAVLTGFLLFSGTERCREVIRKEKESFFYILFLLLLGFI MSVCYFPVCIPAHHVQFVSSLPVLAASTVLFSVLYRNEIMVRGLRAVTVCLAGATLFFGVVFALEYYHVGSQAFQREELI HKAFQEGNLEPEVPSISPLFFEGKVSGTDGNWGGPDTNRRFGIRKLVVKKP >Mature_451_residues MLKPRRIFVFPIAVTFSVLFILYIISWFSPIAGDSFIHDRTGYLGQFHIRHVWKACVDSYLYWNPRLGEMAAFFITSAPR LVWTVLNPVFVLALVLGLYVLALGRMPNLRRECGAWTWLFALSMFVSAGVTVYYVCLTRAGSMNYVWTGCLIVWFMNIYR TRWGKRITSPRWGLSSGCLIYGIFCGACNAGATIGMAAAFCIMAAVGMFRDRRVGAYVWCGFAGVALGGLFLFAAPGLYS RLGHDLGASEVLRKGGFCAYAESFGILLYYHARMLCKIYAVSAVLTGFLLFSGTERCREVIRKEKESFFYILFLLLLGFI MSVCYFPVCIPAHHVQFVSSLPVLAASTVLFSVLYRNEIMVRGLRAVTVCLAGATLFFGVVFALEYYHVGSQAFQREELI HKAFQEGNLEPEVPSISPLFFEGKVSGTDGNWGGPDTNRRFGIRKLVVKKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50500; Mature: 50500
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKPRRIFVFPIAVTFSVLFILYIISWFSPIAGDSFIHDRTGYLGQFHIRHVWKACVDSY CCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH LYWNPRLGEMAAFFITSAPRLVWTVLNPVFVLALVLGLYVLALGRMPNLRRECGAWTWLF HCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHH ALSMFVSAGVTVYYVCLTRAGSMNYVWTGCLIVWFMNIYRTRWGKRITSPRWGLSSGCLI HHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH YGIFCGACNAGATIGMAAAFCIMAAVGMFRDRRVGAYVWCGFAGVALGGLFLFAAPGLYS HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH RLGHDLGASEVLRKGGFCAYAESFGILLYYHARMLCKIYAVSAVLTGFLLFSGTERCREV HHCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH IRKEKESFFYILFLLLLGFIMSVCYFPVCIPAHHVQFVSSLPVLAASTVLFSVLYRNEIM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH VRGLRAVTVCLAGATLFFGVVFALEYYHVGSQAFQREELIHKAFQEGNLEPEVPSISPLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE FEGKVSGTDGNWGGPDTNRRFGIRKLVVKKP EECEECCCCCCCCCCCCCCHHHHHHHHCCCC >Mature Secondary Structure MLKPRRIFVFPIAVTFSVLFILYIISWFSPIAGDSFIHDRTGYLGQFHIRHVWKACVDSY CCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH LYWNPRLGEMAAFFITSAPRLVWTVLNPVFVLALVLGLYVLALGRMPNLRRECGAWTWLF HCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHH ALSMFVSAGVTVYYVCLTRAGSMNYVWTGCLIVWFMNIYRTRWGKRITSPRWGLSSGCLI HHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH YGIFCGACNAGATIGMAAAFCIMAAVGMFRDRRVGAYVWCGFAGVALGGLFLFAAPGLYS HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH RLGHDLGASEVLRKGGFCAYAESFGILLYYHARMLCKIYAVSAVLTGFLLFSGTERCREV HHCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH IRKEKESFFYILFLLLLGFIMSVCYFPVCIPAHHVQFVSSLPVLAASTVLFSVLYRNEIM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH VRGLRAVTVCLAGATLFFGVVFALEYYHVGSQAFQREELIHKAFQEGNLEPEVPSISPLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE FEGKVSGTDGNWGGPDTNRRFGIRKLVVKKP EECEECCCCCCCCCCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA