Click here to switch to the map view.

The map label for this gene is tapB [H]

Identifier: 187736075

GI number: 187736075

Start: 1907415

End: 1909055

Strand: Reverse

Name: tapB [H]

Synonym: Amuc_1586

Alternate gene names: 187736075

Gene position: 1909055-1907415 (Counterclockwise)

Preceding gene: 187736076

Following gene: 187736074

Centisome position: 71.66

GC content: 58.07

Gene sequence:

>1641_bases
GTGTACTCCAACGAATCATATCTCATCGAACTTCTTACGCAGGCCGGATATCTGAATGAAGAAATTCTTCAGTACGCGCG
CAGTCAAAAATCTCCCACCCAGGACCTGGTCGATTTTCTGATTCAGGCCGATTATCTTACGGAAGACGTCATCGCTCAGG
TGGCGGCGTCAAACTCCCTGCTCCCCGTCGTGGACCTGGGCTCCATGCACATCCCCCAGGAGGTGCGCGAACTCATTACG
CCGGAACTTGCCAGGCGCTTCCGGGCCATCCCCATTTCCGACGACGGTTTTTCCATCAACATTGCTATTGACGACCCCCT
GAATCTGGAAACCATGGACAGCCTGCCCCAGCTGATGGGGCGGGATGTGATTTTCAGCGTCGCCACCCACAGCGCGGTAG
AAAGCCGGTTGAATGAATTTTACCGGGATCTGAGCGTTCCGGAAGAAACCGACGGGCTGGAAGGGGAGGATGCTCCCATT
ATCCGGCTGGTGCAGCAGATGCTGACGGACGCTTTCAAAATGAGGGCTTCCGACATCCACATTGAGCCCATGGAAAACAG
GCTCCGCATCCGCTACCGCGTGGACGGCAAGCTGGTGGAAGTGGCCACGCATCCCAAAAAACTGCTCAGCCCCATCATCG
CTCGCCTCAAGGTAATGAGTACCACCATGAGCATTGCGGAAAAACGCATGCCCCAGGACGGGCGAATCCAGATGAGCATC
GGCGGCAAGCAAATCGACCTCCGTGTTTCATCCGTCCCCAGCAACCACGGGGAAAGCATCGTCATGCGTATCCTGGACAA
ATCCGCCCTGGTGCTGGGCCTTCCCCAGCTCGGATTTTTCTCGGATGATGAAGCTGTGTTCGACCGCCTCATCACGCTGC
CGGACGGCATTATCCTGGTGACGGGTCCTACCGGTTCCGGTAAAACCACGACCCTTTACGCGTGCCTGAACCACATCAAC
CGCCCGGATAAAAAAATCATCACGGTGGAAGACCCTGTGGAATACGAACTCTCCGGCATCAACCAGGTAATGGTAAAGGC
GGATATCGGCATGACCTTCGCCGCCGCCCTGCGCGCCATGCTCCGCCAGGCTCCCAACATCATCATGATCGGGGAAATTC
GAGACATGGAAACAGCCAGCATCGCCATCAACGCCTCCCTGACGGGGCACCTCGTATTCTCCACCCTTCACACCAATGAC
GCTCCCAGCGCCGTGGCCCGTCTGGCGGACATCGGCATCAAACGCTTCCTGATCGCCTCCTCCGTCCGCGCCATCATGGC
CCAGCGTCTTGTCCGCAAGCTGTGCGACCGCTGCAAGGTGGACGGCACTCTGACGGAAAAGCAGGCGCATACGCTGAACA
TTGACATGTCCCGCCTTGCCCAGGGCCAAATCAAGGCGCCCCACGGCTGCGACTTTTGCCGCGGCGGCGGATTCAAGGGC
CGGATGGGGCTGTTTGAGATTTTCGAAATCGACGACGAGGTGCGCCGCATGATTAACGAAAATCTGACTTCCCCCCAGCT
GCGCCAGCGCGCCCGGGAACTGGGCATGAGAACCTTGAGGGAAGACGGCGTACGCAAAGTGCTGGCCGGCCTTACTTCTC
CGGAAGAAGTGCTGAACGTCACCATGGGAGACGCCAACTGA

Upstream 100 bases:

>100_bases
GGAAGCTAAGTTGACTTTACGTTCCGAACCTGTCAGAAATAGGGGAGTATCCTGCCGCTCCATTTCGGCAGACTTCCAAC
AATAGCATCCAGAGATCGAC

Downstream 100 bases:

>100_bases
TTTTTCCCCGCTATTCATTCTGCTTATTATGGACACCAACCTCACACTGGAACTTTTCATCGGCCGGGGAATGATTGACA
AATCCCTGGCAAAGGACATC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 546

Protein sequence:

>546_residues
MYSNESYLIELLTQAGYLNEEILQYARSQKSPTQDLVDFLIQADYLTEDVIAQVAASNSLLPVVDLGSMHIPQEVRELIT
PELARRFRAIPISDDGFSINIAIDDPLNLETMDSLPQLMGRDVIFSVATHSAVESRLNEFYRDLSVPEETDGLEGEDAPI
IRLVQQMLTDAFKMRASDIHIEPMENRLRIRYRVDGKLVEVATHPKKLLSPIIARLKVMSTTMSIAEKRMPQDGRIQMSI
GGKQIDLRVSSVPSNHGESIVMRILDKSALVLGLPQLGFFSDDEAVFDRLITLPDGIILVTGPTGSGKTTTLYACLNHIN
RPDKKIITVEDPVEYELSGINQVMVKADIGMTFAAALRAMLRQAPNIIMIGEIRDMETASIAINASLTGHLVFSTLHTND
APSAVARLADIGIKRFLIASSVRAIMAQRLVRKLCDRCKVDGTLTEKQAHTLNIDMSRLAQGQIKAPHGCDFCRGGGFKG
RMGLFEIFEIDDEVRRMINENLTSPQLRQRARELGMRTLREDGVRKVLAGLTSPEEVLNVTMGDAN

Sequences:

>Translated_546_residues
MYSNESYLIELLTQAGYLNEEILQYARSQKSPTQDLVDFLIQADYLTEDVIAQVAASNSLLPVVDLGSMHIPQEVRELIT
PELARRFRAIPISDDGFSINIAIDDPLNLETMDSLPQLMGRDVIFSVATHSAVESRLNEFYRDLSVPEETDGLEGEDAPI
IRLVQQMLTDAFKMRASDIHIEPMENRLRIRYRVDGKLVEVATHPKKLLSPIIARLKVMSTTMSIAEKRMPQDGRIQMSI
GGKQIDLRVSSVPSNHGESIVMRILDKSALVLGLPQLGFFSDDEAVFDRLITLPDGIILVTGPTGSGKTTTLYACLNHIN
RPDKKIITVEDPVEYELSGINQVMVKADIGMTFAAALRAMLRQAPNIIMIGEIRDMETASIAINASLTGHLVFSTLHTND
APSAVARLADIGIKRFLIASSVRAIMAQRLVRKLCDRCKVDGTLTEKQAHTLNIDMSRLAQGQIKAPHGCDFCRGGGFKG
RMGLFEIFEIDDEVRRMINENLTSPQLRQRARELGMRTLREDGVRKVLAGLTSPEEVLNVTMGDAN
>Mature_546_residues
MYSNESYLIELLTQAGYLNEEILQYARSQKSPTQDLVDFLIQADYLTEDVIAQVAASNSLLPVVDLGSMHIPQEVRELIT
PELARRFRAIPISDDGFSINIAIDDPLNLETMDSLPQLMGRDVIFSVATHSAVESRLNEFYRDLSVPEETDGLEGEDAPI
IRLVQQMLTDAFKMRASDIHIEPMENRLRIRYRVDGKLVEVATHPKKLLSPIIARLKVMSTTMSIAEKRMPQDGRIQMSI
GGKQIDLRVSSVPSNHGESIVMRILDKSALVLGLPQLGFFSDDEAVFDRLITLPDGIILVTGPTGSGKTTTLYACLNHIN
RPDKKIITVEDPVEYELSGINQVMVKADIGMTFAAALRAMLRQAPNIIMIGEIRDMETASIAINASLTGHLVFSTLHTND
APSAVARLADIGIKRFLIASSVRAIMAQRLVRKLCDRCKVDGTLTEKQAHTLNIDMSRLAQGQIKAPHGCDFCRGGGFKG
RMGLFEIFEIDDEVRRMINENLTSPQLRQRARELGMRTLREDGVRKVLAGLTSPEEVLNVTMGDAN

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG2804

COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1789723, Length=402, Percent_Identity=49.0049751243781, Blast_Score=370, Evalue=1e-103,
Organism=Escherichia coli, GI1786296, Length=481, Percent_Identity=38.2536382536383, Blast_Score=307, Evalue=1e-84,
Organism=Escherichia coli, GI87082188, Length=194, Percent_Identity=41.7525773195876, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013374
- InterPro:   IPR007831
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E; PF05157 GSPII_E_N [H]

EC number: NA

Molecular weight: Translated: 60595; Mature: 60595

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSNESYLIELLTQAGYLNEEILQYARSQKSPTQDLVDFLIQADYLTEDVIAQVAASNSL
CCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPVVDLGSMHIPQEVRELITPELARRFRAIPISDDGFSINIAIDDPLNLETMDSLPQLMG
CEEEECCCCCCCHHHHHHHCHHHHHHHEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHC
RDVIFSVATHSAVESRLNEFYRDLSVPEETDGLEGEDAPIIRLVQQMLTDAFKMRASDIH
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEE
IEPMENRLRIRYRVDGKLVEVATHPKKLLSPIIARLKVMSTTMSIAEKRMPQDGRIQMSI
ECCCCCCEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
GGKQIDLRVSSVPSNHGESIVMRILDKSALVLGLPQLGFFSDDEAVFDRLITLPDGIILV
CCEEEEEEEECCCCCCCHHHHHHHHHCCHHEEECCCCCCCCCCHHHHHHHHHCCCCEEEE
TGPTGSGKTTTLYACLNHINRPDKKIITVEDPVEYELSGINQVMVKADIGMTFAAALRAM
ECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHCCCCEEEEEECCCHHHHHHHHHH
LRQAPNIIMIGEIRDMETASIAINASLTGHLVFSTLHTNDAPSAVARLADIGIKRFLIAS
HHHCCCEEEEECCCCCCEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
SVRAIMAQRLVRKLCDRCKVDGTLTEKQAHTLNIDMSRLAQGQIKAPHGCDFCRGGGFKG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCC
RMGLFEIFEIDDEVRRMINENLTSPQLRQRARELGMRTLREDGVRKVLAGLTSPEEVLNV
CCCHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEE
TMGDAN
ECCCCC
>Mature Secondary Structure
MYSNESYLIELLTQAGYLNEEILQYARSQKSPTQDLVDFLIQADYLTEDVIAQVAASNSL
CCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPVVDLGSMHIPQEVRELITPELARRFRAIPISDDGFSINIAIDDPLNLETMDSLPQLMG
CEEEECCCCCCCHHHHHHHCHHHHHHHEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHC
RDVIFSVATHSAVESRLNEFYRDLSVPEETDGLEGEDAPIIRLVQQMLTDAFKMRASDIH
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEE
IEPMENRLRIRYRVDGKLVEVATHPKKLLSPIIARLKVMSTTMSIAEKRMPQDGRIQMSI
ECCCCCCEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
GGKQIDLRVSSVPSNHGESIVMRILDKSALVLGLPQLGFFSDDEAVFDRLITLPDGIILV
CCEEEEEEEECCCCCCCHHHHHHHHHCCHHEEECCCCCCCCCCHHHHHHHHHCCCCEEEE
TGPTGSGKTTTLYACLNHINRPDKKIITVEDPVEYELSGINQVMVKADIGMTFAAALRAM
ECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHCCCCEEEEEECCCHHHHHHHHHH
LRQAPNIIMIGEIRDMETASIAINASLTGHLVFSTLHTNDAPSAVARLADIGIKRFLIAS
HHHCCCEEEEECCCCCCEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
SVRAIMAQRLVRKLCDRCKVDGTLTEKQAHTLNIDMSRLAQGQIKAPHGCDFCRGGGFKG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCC
RMGLFEIFEIDDEVRRMINENLTSPQLRQRARELGMRTLREDGVRKVLAGLTSPEEVLNV
CCCHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEE
TMGDAN
ECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]