Click here to switch to the map view.

The map label for this gene is tapC [H]

Identifier: 187736073

GI number: 187736073

Start: 1904390

End: 1905658

Strand: Reverse

Name: tapC [H]

Synonym: Amuc_1584

Alternate gene names: 187736073

Gene position: 1905658-1904390 (Counterclockwise)

Preceding gene: 187736074

Following gene: 187736072

Centisome position: 71.53

GC content: 56.58

Gene sequence:

>1269_bases
ATGCCTAAATATCAATACACAGCACTTGACCATAAAGGCGACCAGAAAACAGGTACCCTGGAGGCCAATTCCGAAGCGGA
GGCCATGGAATCCATCCGGGCGCATGGCCTGTACCCCACCCAGATCGTAGAAGCGGGCAAGGGCAAGATTCAGCAGACGC
CTGCCGCCAAGAAAAAGGCCAAGGGAGCCAAGAAGCAAAAAGGCAAGCTGGGAGGCAAAATCAAGGCCAAGGCTCTGATG
ATTTTCACCCGCCAGCTTGCTACGCTGATTGACGCGGGGCTTCCCCTGCTCCAGAGTTTGAACGTGCTGGCCAAACAGGA
GGCAAACCCCAACCTGCGCGTAACCATTGAGGCTCTTGGAGATTCCGTTCAGGGCGGCTCCACCTTCTCGGAAGCCCTGG
CCCAACACCCCAGAATTTTTGACCGCCTGTTTGTCAACATGGTAAAGGCCGGGGAACTGGGCGGTGTGCTGGAAGTCGTG
CTGAACCGTCTGGCGGAATACCAGGAAAAGGCCCAAAAGCTGAAAAGCAAGGTGATCTCCGCCATGGTGTATCCCTCCAT
CGTCCTGTTTATCGCCGTAGGCATCGTGATCTTCCTGATGCTGGTCATCGTGCCCAAATTCAAGGCGATGTTCGCAGAAC
AGAACCAGGAACTTCCCGGTATTTCCGAGTTTGTGTTCGGCATCAGCGACTGGTTCATGGCCGCCCCCTTCTTTGTGCCC
AATGCCGTCATTCTGGCCGCGGTAGTCGCCATCCTGTACGCTGTTTTCACGGCCATGAGCAAGACGCCCAACGGACGCCG
CAAGATTGACTCCGCTCTGCTGACCATGCCGGTCATCGGCAATGTGCAGAGCAAAAGCGCCATCGCCCGCTTCGCCCGAA
CCTTCGGTACGCTGGTGACTTCCGGCGTCCCCATCCTCCAGGCGCTTACCATCACGAAGGATACCGCCGGCAACATGATC
GTGGGAGACGCCATCGGCCTCATCCATGACTCCGTCAAGGAAGGCGAATCCGTAGTTACGCCCATGTCCTCCTCCAAGCT
TTTCCCGCCCATGGTAATCTCCATGGTGGACGTGGGGGAAGAAACCGGCCAGTTGCCGGACATGCTCCTGAAAATCGCGG
ACGTGTATGATGATGAAGTGGACAATGCCGTGGGAGCTATGACCTCCATGCTGGAACCCATCATGATCGTATTCCTGGCC
GTGGTCGTGGGCGGCATCGTGTTCGCCATGTTCCTTCCCCTCCTGCAGGTTATTGAAAAGATGGGATAA

Upstream 100 bases:

>100_bases
CACCATTGAAGAAGTGCTGAAATATACTTAACGGACAGCCGGACGCCGTTGCTTCCCCTTATTTCAACCACTAAGAAAAA
ACACTTAAAATACAACATAT

Downstream 100 bases:

>100_bases
CCCCTCAAGCAGAATCAGATGAAAAATCATTCCGCATACCGCCGGCTCCGGGAGGCAAAGGGGTTCACCCTCATGGAAAT
CCTGGTAGTGATGGTGATCA

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MPKYQYTALDHKGDQKTGTLEANSEAEAMESIRAHGLYPTQIVEAGKGKIQQTPAAKKKAKGAKKQKGKLGGKIKAKALM
IFTRQLATLIDAGLPLLQSLNVLAKQEANPNLRVTIEALGDSVQGGSTFSEALAQHPRIFDRLFVNMVKAGELGGVLEVV
LNRLAEYQEKAQKLKSKVISAMVYPSIVLFIAVGIVIFLMLVIVPKFKAMFAEQNQELPGISEFVFGISDWFMAAPFFVP
NAVILAAVVAILYAVFTAMSKTPNGRRKIDSALLTMPVIGNVQSKSAIARFARTFGTLVTSGVPILQALTITKDTAGNMI
VGDAIGLIHDSVKEGESVVTPMSSSKLFPPMVISMVDVGEETGQLPDMLLKIADVYDDEVDNAVGAMTSMLEPIMIVFLA
VVVGGIVFAMFLPLLQVIEKMG

Sequences:

>Translated_422_residues
MPKYQYTALDHKGDQKTGTLEANSEAEAMESIRAHGLYPTQIVEAGKGKIQQTPAAKKKAKGAKKQKGKLGGKIKAKALM
IFTRQLATLIDAGLPLLQSLNVLAKQEANPNLRVTIEALGDSVQGGSTFSEALAQHPRIFDRLFVNMVKAGELGGVLEVV
LNRLAEYQEKAQKLKSKVISAMVYPSIVLFIAVGIVIFLMLVIVPKFKAMFAEQNQELPGISEFVFGISDWFMAAPFFVP
NAVILAAVVAILYAVFTAMSKTPNGRRKIDSALLTMPVIGNVQSKSAIARFARTFGTLVTSGVPILQALTITKDTAGNMI
VGDAIGLIHDSVKEGESVVTPMSSSKLFPPMVISMVDVGEETGQLPDMLLKIADVYDDEVDNAVGAMTSMLEPIMIVFLA
VVVGGIVFAMFLPLLQVIEKMG
>Mature_421_residues
PKYQYTALDHKGDQKTGTLEANSEAEAMESIRAHGLYPTQIVEAGKGKIQQTPAAKKKAKGAKKQKGKLGGKIKAKALMI
FTRQLATLIDAGLPLLQSLNVLAKQEANPNLRVTIEALGDSVQGGSTFSEALAQHPRIFDRLFVNMVKAGELGGVLEVVL
NRLAEYQEKAQKLKSKVISAMVYPSIVLFIAVGIVIFLMLVIVPKFKAMFAEQNQELPGISEFVFGISDWFMAAPFFVPN
AVILAAVVAILYAVFTAMSKTPNGRRKIDSALLTMPVIGNVQSKSAIARFARTFGTLVTSGVPILQALTITKDTAGNMIV
GDAIGLIHDSVKEGESVVTPMSSSKLFPPMVISMVDVGEETGQLPDMLLKIADVYDDEVDNAVGAMTSMLEPIMIVFLAV
VVGGIVFAMFLPLLQVIEKMG

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=415, Percent_Identity=31.566265060241, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI1786295, Length=342, Percent_Identity=24.8538011695906, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 45370; Mature: 45239

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CC
>Mature Secondary Structure 
PKYQYTALDHKGDQKTGTLEANSEAEAMESIRAHGLYPTQIVEAGKGKIQQTPAAKKKA
CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHH
KGAKKQKGKLGGKIKAKALMIFTRQLATLIDAGLPLLQSLNVLAKQEANPNLRVTIEALG
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEHHHHC
DSVQGGSTFSEALAQHPRIFDRLFVNMVKAGELGGVLEVVLNRLAEYQEKAQKLKSKVIS
CCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AMVYPSIVLFIAVGIVIFLMLVIVPKFKAMFAEQNQELPGISEFVFGISDWFMAAPFFVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
NAVILAAVVAILYAVFTAMSKTPNGRRKIDSALLTMPVIGNVQSKSAIARFARTFGTLVT
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SGVPILQALTITKDTAGNMIVGDAIGLIHDSVKEGESVVTPMSSSKLFPPMVISMVDVGE
CCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHCCH
ETGQLPDMLLKIADVYDDEVDNAVGAMTSMLEPIMIVFLAVVVGGIVFAMFLPLLQVIEK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]