Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is ykcC [H]

Identifier: 187736071

GI number: 187736071

Start: 1902633

End: 1903577

Strand: Reverse

Name: ykcC [H]

Synonym: Amuc_1582

Alternate gene names: 187736071

Gene position: 1903577-1902633 (Counterclockwise)

Preceding gene: 187736072

Following gene: 187736070

Centisome position: 71.45

GC content: 52.59

Gene sequence:

>945_bases
ATGAAACGTATTTCCCTGATCGTTCCCTGCCTGAATGAAGAAGAAGCCATTCCGGCGTTCAAGCAAGAAATAGACCGGGT
TTTCAAGGAATGCCTGGAGGGCTACGCCCCGGAACTTATCTTCGTGGACGACGGTTCCACGGACCGCTCCCTGGAAATGA
TTAAGAAAATGGCGGAACACTCCCCTGAAGTAAAATTCATTTCCTTCTCCCGCAATTTCGGGAAGGAAGCCGCCATCTAT
GCGGGCCTGGAAGCGGCCACAGGGGATTATGCCGCCGTCATGGATGTGGACCTTCAGGATCCTCCTTCCCTGCTTCCGGA
TATGCTGAAAGCCATTGAAAAGGAAGGATATGACTGTGCGGGAACGCGCCGCGTCACCCGGCAGGGGGAACCGCTGCTGC
GGTCCTTTTTCGCCCGCGCCTTTTATAAGACGATTCATCAGATATCGGACACCCGCATCGTGGACGGAGCCCGGGACTAC
AAGCTGATGACTCGGCCCGTACTGGAAGCCCTGCTTTCCCTGAAGGAGTACAACCGATTTTCCAAAGGGCTGTACGAATG
GGTGGGGTTCCGGACCAAATGGTTTGAATATGAAAATGTGGAACGGGTGGCAGGAGAAACCAAGTGGTCTTTCTTCAAGC
TGTTCCTGTACTCCATTGAAGGTATCGTGGCCTTTTCCACCGCCCCTCTGGCGCTGGCTTCCATCATGGGGGTACTTCTT
TCCTTCATCTCATTCCTTTCCATCATTATCTTGACTGTCCGCGAATTGATCTGGCCCCATTCCGCTTATGGATGGACTTC
CCTGGTATGCGTCTTCTGCATGATGGGTGGCATCGTGCTGCTGTGCTTGGGCATTTTGGGCCAATATCTGGCCAAAACCT
ATACGGAAGTTAAAAAGCGCCCTATTTACATCGCCAGGGAACGTTCCATCAAGCCTTTCAACTAA

Upstream 100 bases:

>100_bases
GCTTCTTTTCCGGCAGCCTTCCTCCTCTTCCGGCGGAGGAAGGCTTTGTGCATATTTTCTGGCATCCGCACGGCTTCTGA
AGTATGATTCGGGCACTGAC

Downstream 100 bases:

>100_bases
CCTTGCCTATGGACACAGAACCGGATTTCAGCATTATTACGCCCAGCTATAATTACGCCCGCTACGTAAGGGAATGCATA
GAGAGCGTCAAAAACCAGGA

Product: glycosyl transferase family 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MKRISLIVPCLNEEEAIPAFKQEIDRVFKECLEGYAPELIFVDDGSTDRSLEMIKKMAEHSPEVKFISFSRNFGKEAAIY
AGLEAATGDYAAVMDVDLQDPPSLLPDMLKAIEKEGYDCAGTRRVTRQGEPLLRSFFARAFYKTIHQISDTRIVDGARDY
KLMTRPVLEALLSLKEYNRFSKGLYEWVGFRTKWFEYENVERVAGETKWSFFKLFLYSIEGIVAFSTAPLALASIMGVLL
SFISFLSIIILTVRELIWPHSAYGWTSLVCVFCMMGGIVLLCLGILGQYLAKTYTEVKKRPIYIARERSIKPFN

Sequences:

>Translated_314_residues
MKRISLIVPCLNEEEAIPAFKQEIDRVFKECLEGYAPELIFVDDGSTDRSLEMIKKMAEHSPEVKFISFSRNFGKEAAIY
AGLEAATGDYAAVMDVDLQDPPSLLPDMLKAIEKEGYDCAGTRRVTRQGEPLLRSFFARAFYKTIHQISDTRIVDGARDY
KLMTRPVLEALLSLKEYNRFSKGLYEWVGFRTKWFEYENVERVAGETKWSFFKLFLYSIEGIVAFSTAPLALASIMGVLL
SFISFLSIIILTVRELIWPHSAYGWTSLVCVFCMMGGIVLLCLGILGQYLAKTYTEVKKRPIYIARERSIKPFN
>Mature_314_residues
MKRISLIVPCLNEEEAIPAFKQEIDRVFKECLEGYAPELIFVDDGSTDRSLEMIKKMAEHSPEVKFISFSRNFGKEAAIY
AGLEAATGDYAAVMDVDLQDPPSLLPDMLKAIEKEGYDCAGTRRVTRQGEPLLRSFFARAFYKTIHQISDTRIVDGARDY
KLMTRPVLEALLSLKEYNRFSKGLYEWVGFRTKWFEYENVERVAGETKWSFFKLFLYSIEGIVAFSTAPLALASIMGVLL
SFISFLSIIILTVRELIWPHSAYGWTSLVCVFCMMGGIVLLCLGILGQYLAKTYTEVKKRPIYIARERSIKPFN

Specific function: Involved In O Antigen Modification. Catalyzes The Transfer Of The Glucose Residue From Udp-Glucose To A Lipid Carrier (By Similarity). [C]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. GtrB subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788692, Length=304, Percent_Identity=39.1447368421053, Blast_Score=227, Evalue=8e-61,
Organism=Escherichia coli, GI1788588, Length=321, Percent_Identity=30.2180685358255, Blast_Score=145, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 35798; Mature: 35798

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRISLIVPCLNEEEAIPAFKQEIDRVFKECLEGYAPELIFVDDGSTDRSLEMIKKMAEH
CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC
SPEVKFISFSRNFGKEAAIYAGLEAATGDYAAVMDVDLQDPPSLLPDMLKAIEKEGYDCA
CCCEEEEEECCCCCCHHHHHHCCHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC
GTRRVTRQGEPLLRSFFARAFYKTIHQISDTRIVDGARDYKLMTRPVLEALLSLKEYNRF
CCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH
SKGLYEWVGFRTKWFEYENVERVAGETKWSFFKLFLYSIEGIVAFSTAPLALASIMGVLL
HHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
SFISFLSIIILTVRELIWPHSAYGWTSLVCVFCMMGGIVLLCLGILGQYLAKTYTEVKKR
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PIYIARERSIKPFN
CEEEEECCCCCCCC
>Mature Secondary Structure
MKRISLIVPCLNEEEAIPAFKQEIDRVFKECLEGYAPELIFVDDGSTDRSLEMIKKMAEH
CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC
SPEVKFISFSRNFGKEAAIYAGLEAATGDYAAVMDVDLQDPPSLLPDMLKAIEKEGYDCA
CCCEEEEEECCCCCCHHHHHHCCHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC
GTRRVTRQGEPLLRSFFARAFYKTIHQISDTRIVDGARDYKLMTRPVLEALLSLKEYNRF
CCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH
SKGLYEWVGFRTKWFEYENVERVAGETKWSFFKLFLYSIEGIVAFSTAPLALASIMGVLL
HHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
SFISFLSIIILTVRELIWPHSAYGWTSLVCVFCMMGGIVLLCLGILGQYLAKTYTEVKKR
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PIYIARERSIKPFN
CEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]