Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ykcC [H]
Identifier: 187736071
GI number: 187736071
Start: 1902633
End: 1903577
Strand: Reverse
Name: ykcC [H]
Synonym: Amuc_1582
Alternate gene names: 187736071
Gene position: 1903577-1902633 (Counterclockwise)
Preceding gene: 187736072
Following gene: 187736070
Centisome position: 71.45
GC content: 52.59
Gene sequence:
>945_bases ATGAAACGTATTTCCCTGATCGTTCCCTGCCTGAATGAAGAAGAAGCCATTCCGGCGTTCAAGCAAGAAATAGACCGGGT TTTCAAGGAATGCCTGGAGGGCTACGCCCCGGAACTTATCTTCGTGGACGACGGTTCCACGGACCGCTCCCTGGAAATGA TTAAGAAAATGGCGGAACACTCCCCTGAAGTAAAATTCATTTCCTTCTCCCGCAATTTCGGGAAGGAAGCCGCCATCTAT GCGGGCCTGGAAGCGGCCACAGGGGATTATGCCGCCGTCATGGATGTGGACCTTCAGGATCCTCCTTCCCTGCTTCCGGA TATGCTGAAAGCCATTGAAAAGGAAGGATATGACTGTGCGGGAACGCGCCGCGTCACCCGGCAGGGGGAACCGCTGCTGC GGTCCTTTTTCGCCCGCGCCTTTTATAAGACGATTCATCAGATATCGGACACCCGCATCGTGGACGGAGCCCGGGACTAC AAGCTGATGACTCGGCCCGTACTGGAAGCCCTGCTTTCCCTGAAGGAGTACAACCGATTTTCCAAAGGGCTGTACGAATG GGTGGGGTTCCGGACCAAATGGTTTGAATATGAAAATGTGGAACGGGTGGCAGGAGAAACCAAGTGGTCTTTCTTCAAGC TGTTCCTGTACTCCATTGAAGGTATCGTGGCCTTTTCCACCGCCCCTCTGGCGCTGGCTTCCATCATGGGGGTACTTCTT TCCTTCATCTCATTCCTTTCCATCATTATCTTGACTGTCCGCGAATTGATCTGGCCCCATTCCGCTTATGGATGGACTTC CCTGGTATGCGTCTTCTGCATGATGGGTGGCATCGTGCTGCTGTGCTTGGGCATTTTGGGCCAATATCTGGCCAAAACCT ATACGGAAGTTAAAAAGCGCCCTATTTACATCGCCAGGGAACGTTCCATCAAGCCTTTCAACTAA
Upstream 100 bases:
>100_bases GCTTCTTTTCCGGCAGCCTTCCTCCTCTTCCGGCGGAGGAAGGCTTTGTGCATATTTTCTGGCATCCGCACGGCTTCTGA AGTATGATTCGGGCACTGAC
Downstream 100 bases:
>100_bases CCTTGCCTATGGACACAGAACCGGATTTCAGCATTATTACGCCCAGCTATAATTACGCCCGCTACGTAAGGGAATGCATA GAGAGCGTCAAAAACCAGGA
Product: glycosyl transferase family 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MKRISLIVPCLNEEEAIPAFKQEIDRVFKECLEGYAPELIFVDDGSTDRSLEMIKKMAEHSPEVKFISFSRNFGKEAAIY AGLEAATGDYAAVMDVDLQDPPSLLPDMLKAIEKEGYDCAGTRRVTRQGEPLLRSFFARAFYKTIHQISDTRIVDGARDY KLMTRPVLEALLSLKEYNRFSKGLYEWVGFRTKWFEYENVERVAGETKWSFFKLFLYSIEGIVAFSTAPLALASIMGVLL SFISFLSIIILTVRELIWPHSAYGWTSLVCVFCMMGGIVLLCLGILGQYLAKTYTEVKKRPIYIARERSIKPFN
Sequences:
>Translated_314_residues MKRISLIVPCLNEEEAIPAFKQEIDRVFKECLEGYAPELIFVDDGSTDRSLEMIKKMAEHSPEVKFISFSRNFGKEAAIY AGLEAATGDYAAVMDVDLQDPPSLLPDMLKAIEKEGYDCAGTRRVTRQGEPLLRSFFARAFYKTIHQISDTRIVDGARDY KLMTRPVLEALLSLKEYNRFSKGLYEWVGFRTKWFEYENVERVAGETKWSFFKLFLYSIEGIVAFSTAPLALASIMGVLL SFISFLSIIILTVRELIWPHSAYGWTSLVCVFCMMGGIVLLCLGILGQYLAKTYTEVKKRPIYIARERSIKPFN >Mature_314_residues MKRISLIVPCLNEEEAIPAFKQEIDRVFKECLEGYAPELIFVDDGSTDRSLEMIKKMAEHSPEVKFISFSRNFGKEAAIY AGLEAATGDYAAVMDVDLQDPPSLLPDMLKAIEKEGYDCAGTRRVTRQGEPLLRSFFARAFYKTIHQISDTRIVDGARDY KLMTRPVLEALLSLKEYNRFSKGLYEWVGFRTKWFEYENVERVAGETKWSFFKLFLYSIEGIVAFSTAPLALASIMGVLL SFISFLSIIILTVRELIWPHSAYGWTSLVCVFCMMGGIVLLCLGILGQYLAKTYTEVKKRPIYIARERSIKPFN
Specific function: Involved In O Antigen Modification. Catalyzes The Transfer Of The Glucose Residue From Udp-Glucose To A Lipid Carrier (By Similarity). [C]
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family. GtrB subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788692, Length=304, Percent_Identity=39.1447368421053, Blast_Score=227, Evalue=8e-61, Organism=Escherichia coli, GI1788588, Length=321, Percent_Identity=30.2180685358255, Blast_Score=145, Evalue=3e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.4.1.- [C]
Molecular weight: Translated: 35798; Mature: 35798
Theoretical pI: Translated: 7.30; Mature: 7.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRISLIVPCLNEEEAIPAFKQEIDRVFKECLEGYAPELIFVDDGSTDRSLEMIKKMAEH CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC SPEVKFISFSRNFGKEAAIYAGLEAATGDYAAVMDVDLQDPPSLLPDMLKAIEKEGYDCA CCCEEEEEECCCCCCHHHHHHCCHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC GTRRVTRQGEPLLRSFFARAFYKTIHQISDTRIVDGARDYKLMTRPVLEALLSLKEYNRF CCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH SKGLYEWVGFRTKWFEYENVERVAGETKWSFFKLFLYSIEGIVAFSTAPLALASIMGVLL HHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH SFISFLSIIILTVRELIWPHSAYGWTSLVCVFCMMGGIVLLCLGILGQYLAKTYTEVKKR HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PIYIARERSIKPFN CEEEEECCCCCCCC >Mature Secondary Structure MKRISLIVPCLNEEEAIPAFKQEIDRVFKECLEGYAPELIFVDDGSTDRSLEMIKKMAEH CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC SPEVKFISFSRNFGKEAAIYAGLEAATGDYAAVMDVDLQDPPSLLPDMLKAIEKEGYDCA CCCEEEEEECCCCCCHHHHHHCCHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC GTRRVTRQGEPLLRSFFARAFYKTIHQISDTRIVDGARDYKLMTRPVLEALLSLKEYNRF CCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH SKGLYEWVGFRTKWFEYENVERVAGETKWSFFKLFLYSIEGIVAFSTAPLALASIMGVLL HHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH SFISFLSIIILTVRELIWPHSAYGWTSLVCVFCMMGGIVLLCLGILGQYLAKTYTEVKKR HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PIYIARERSIKPFN CEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]