Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736034
Identifier: 187736034
GI number: 187736034
Start: 1857064
End: 1857846
Strand: Direct
Name: 187736034
Synonym: Amuc_1544
Alternate gene names: NA
Gene position: 1857064-1857846 (Clockwise)
Preceding gene: 187736031
Following gene: 187736035
Centisome position: 69.71
GC content: 56.32
Gene sequence:
>783_bases ATGAAATCTTATGCATGCCTTTGTTTATTGCTGGCGGGAGTTTTTTGCGTTGCTTTTTTCTCCGGGGCCTGTGCTGATGA ATTGCCGCCCACGCTGAAGCCCCAGGTGAACCCGCGGGCCGTGTATGACTGGAAAAAACGTCATGAAGCAGTGATGGAGC GGAACCGGACCGTCAAACCGGAATATGTCGTCTTTGGTGACAGCATTACCCACCGCTGGGGCGGCGAGCCTTCCGGGGAC AACAGGGCTCTCGGAACAGGAAAAACCGCCTGGCATAGCCTGTTTTCTTCCCATGCGGTAACCAATATGGGGTTTGGTTC CGATTACGTGGATAATGCCTATTACCGCTTGCAGCTGGGAGAGCTGGACGGCATTTCTCCGCGGGTCATCATCGTGCTGC TGGGAACCAATAATCTTGGCGGGCGGAAGGATGCTCCCCGGGCCTGCGCAGACAATCTCAAGGCTTTTGTGAGCCTGGCG CGCCGGAAGTGCCCCTCTTCCAAAATCCTGTTGCTGGGCATTCTCCCCAGGGAGGAAAAAAAGCTGGCTCCCCTGATTAG GGAAACCAATAAAATGATATCCGGCCTGGCTGACGGAAACAGCGTGTTTTTCGCCAATCCCGGCGAGGAATTCCTGGGGG AGGACGGAGTGTCCCCAAAACCCGGGCTGCTGGAGGATGGGCTGCATCCCAGTGCCAGGGGGTACGACATACTGGGGAAG TCGTTGAGCGTATTGCTGAAGAAAATGGACGACAAGTACGGCAAGCTGCCCGCTCCCCGGTAG
Upstream 100 bases:
>100_bases GAGCGGAAAATGAGGGGAACATGCGATTGCGGAAAAGTGACGGAAGATTATTTCTCTTTACTTTCCTAATCTCTATTGCA GTATCTCAACGCTTACCGTT
Downstream 100 bases:
>100_bases ATGAATACGGGGGAGGGCGTTCCTGTTCCGGGAGAGGCCGGGGGATGGATGAAATGGAGCGCGCCTTGGAAGAGGCCGGA CACGGTGCTCGCCTGGCCGT
Product: lipolytic protein G-D-S-L family
Products: NA
Alternate protein names: GDSL Family Lipase; Mucin-Desulfating Sulfatase; Acetylhydrolase; 1-Alkyl-2-Acetylglycerophosphocholine Esterase; Exo-1 4-Beta-Glucosidase; Sialate O-Acetylesterase; Acetylhydrolase Lipase_gdsl Protein; GDSL-Like Lipase/Acylhydrolase Domain-Containing Protein; 1 4-Beta-D-Glucan Glucohydrolase Cel3D; Glycoside Hydrolase Family 3 Domain Protein; Lipolytic G-D-S-L; GDSL-Like Lipase/Acylhydrolase; Lipolytic GDSL Family; Lipase/Acylhydrolase Family Protein; Platelet-Activating Factor Acetylhydrolase IB Gamma Subunit
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MKSYACLCLLLAGVFCVAFFSGACADELPPTLKPQVNPRAVYDWKKRHEAVMERNRTVKPEYVVFGDSITHRWGGEPSGD NRALGTGKTAWHSLFSSHAVTNMGFGSDYVDNAYYRLQLGELDGISPRVIIVLLGTNNLGGRKDAPRACADNLKAFVSLA RRKCPSSKILLLGILPREEKKLAPLIRETNKMISGLADGNSVFFANPGEEFLGEDGVSPKPGLLEDGLHPSARGYDILGK SLSVLLKKMDDKYGKLPAPR
Sequences:
>Translated_260_residues MKSYACLCLLLAGVFCVAFFSGACADELPPTLKPQVNPRAVYDWKKRHEAVMERNRTVKPEYVVFGDSITHRWGGEPSGD NRALGTGKTAWHSLFSSHAVTNMGFGSDYVDNAYYRLQLGELDGISPRVIIVLLGTNNLGGRKDAPRACADNLKAFVSLA RRKCPSSKILLLGILPREEKKLAPLIRETNKMISGLADGNSVFFANPGEEFLGEDGVSPKPGLLEDGLHPSARGYDILGK SLSVLLKKMDDKYGKLPAPR >Mature_260_residues MKSYACLCLLLAGVFCVAFFSGACADELPPTLKPQVNPRAVYDWKKRHEAVMERNRTVKPEYVVFGDSITHRWGGEPSGD NRALGTGKTAWHSLFSSHAVTNMGFGSDYVDNAYYRLQLGELDGISPRVIIVLLGTNNLGGRKDAPRACADNLKAFVSLA RRKCPSSKILLLGILPREEKKLAPLIRETNKMISGLADGNSVFFANPGEEFLGEDGVSPKPGLLEDGLHPSARGYDILGK SLSVLLKKMDDKYGKLPAPR
Specific function: Unknown
COG id: COG2755
COG function: function code E; Lysophospholipase L1 and related esterases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI225543099, Length=216, Percent_Identity=28.7037037037037, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI225543097, Length=216, Percent_Identity=28.7037037037037, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI4505587, Length=216, Percent_Identity=28.7037037037037, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI4505585, Length=227, Percent_Identity=28.1938325991189, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28394; Mature: 28394
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSYACLCLLLAGVFCVAFFSGACADELPPTLKPQVNPRAVYDWKKRHEAVMERNRTVKP CCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC EYVVFGDSITHRWGGEPSGDNRALGTGKTAWHSLFSSHAVTNMGFGSDYVDNAYYRLQLG CEEEECCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCEEEEEEC ELDGISPRVIIVLLGTNNLGGRKDAPRACADNLKAFVSLARRKCPSSKILLLGILPREEK CCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH KLAPLIRETNKMISGLADGNSVFFANPGEEFLGEDGVSPKPGLLEDGLHPSARGYDILGK HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCCCCCCCHHCCCCCCCCCHHHHHH SLSVLLKKMDDKYGKLPAPR HHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MKSYACLCLLLAGVFCVAFFSGACADELPPTLKPQVNPRAVYDWKKRHEAVMERNRTVKP CCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC EYVVFGDSITHRWGGEPSGDNRALGTGKTAWHSLFSSHAVTNMGFGSDYVDNAYYRLQLG CEEEECCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCEEEEEEC ELDGISPRVIIVLLGTNNLGGRKDAPRACADNLKAFVSLARRKCPSSKILLLGILPREEK CCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH KLAPLIRETNKMISGLADGNSVFFANPGEEFLGEDGVSPKPGLLEDGLHPSARGYDILGK HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCCCCCCCHHCCCCCCCCCHHHHHH SLSVLLKKMDDKYGKLPAPR HHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA