Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is rpmJ [H]
Identifier: 187736030
GI number: 187736030
Start: 1851095
End: 1851529
Strand: Reverse
Name: rpmJ [H]
Synonym: Amuc_1540
Alternate gene names: 187736030
Gene position: 1851529-1851095 (Counterclockwise)
Preceding gene: 187736032
Following gene: 187736029
Centisome position: 69.5
GC content: 50.11
Gene sequence:
>435_bases ATGTTATACGAATCCCCTCCGGTCCACAAACCCTTTATTCCCCCGGCAGAGGTCCCTTCCCGCATTTTATTTTCCCGGCT AAATGACGTCTTCCCTAAATTTTTCCGCCGGCGCGGAATCCAAAGCCATCCCATGCTTTACTGCATCTTCCTCATAAAAG CATCTCTGCGGAGACGGCATCTTACTTTTGGCAAAGAAATGACTTTACAATTCTTAACTAAACGGTATATTCCGTCTCCC GAACCGAACACCAAACCGGAGTTATACACCATGAAAGTTCTTTCTTCCTTAGCCTCTATGAAGCGCCGCCACGCAGACTG CCAAATCGTGAAGCGCAAGGGCACGCTGTATGTGATCTGCAAGAGCAATCCCAAGTTCAAGGCCCGCCAGGGCGCTACGG CAGGCACGCGCCTTTCCAAAAAGGGCGTCAAGTAA
Upstream 100 bases:
>100_bases AGCAGAAACCCTTTCATTCCCAAATGATGGGCAAACGTATTCCGGGAAGCCGGGGAGGAATCAGGAGAGGAAGAATCAGT CATAAGGAAAACCGGAAAAG
Downstream 100 bases:
>100_bases TCCCTGGCCCAGCACAGATTTCAAGAAGACCGCCGCCCGCCGGGTGCCGGTCTTTTTTTGCTGACCAAACCCCTTTCCGT ACATCCATGCAGCTTCCTGC
Product: ribosomal protein L36
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 144; Mature: 144
Protein sequence:
>144_residues MLYESPPVHKPFIPPAEVPSRILFSRLNDVFPKFFRRRGIQSHPMLYCIFLIKASLRRRHLTFGKEMTLQFLTKRYIPSP EPNTKPELYTMKVLSSLASMKRRHADCQIVKRKGTLYVICKSNPKFKARQGATAGTRLSKKGVK
Sequences:
>Translated_144_residues MLYESPPVHKPFIPPAEVPSRILFSRLNDVFPKFFRRRGIQSHPMLYCIFLIKASLRRRHLTFGKEMTLQFLTKRYIPSP EPNTKPELYTMKVLSSLASMKRRHADCQIVKRKGTLYVICKSNPKFKARQGATAGTRLSKKGVK >Mature_144_residues MLYESPPVHKPFIPPAEVPSRILFSRLNDVFPKFFRRRGIQSHPMLYCIFLIKASLRRRHLTFGKEMTLQFLTKRYIPSP EPNTKPELYTMKVLSSLASMKRRHADCQIVKRKGTLYVICKSNPKFKARQGATAGTRLSKKGVK
Specific function: Unknown
COG id: COG0257
COG function: function code J; Ribosomal protein L36
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribosomal protein L36P family [H]
Homologues:
Organism=Escherichia coli, GI87081713, Length=41, Percent_Identity=78.0487804878049, Blast_Score=68, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000473 [H]
Pfam domain/function: PF00444 Ribosomal_L36 [H]
EC number: NA
Molecular weight: Translated: 16693; Mature: 16693
Theoretical pI: Translated: 11.45; Mature: 11.45
Prosite motif: PS00828 RIBOSOMAL_L36
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYESPPVHKPFIPPAEVPSRILFSRLNDVFPKFFRRRGIQSHPMLYCIFLIKASLRRRH CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH LTFGKEMTLQFLTKRYIPSPEPNTKPELYTMKVLSSLASMKRRHADCQIVKRKGTLYVIC HHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEE KSNPKFKARQGATAGTRLSKKGVK CCCCCCCCCCCCCCCCHHHCCCCC >Mature Secondary Structure MLYESPPVHKPFIPPAEVPSRILFSRLNDVFPKFFRRRGIQSHPMLYCIFLIKASLRRRH CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH LTFGKEMTLQFLTKRYIPSPEPNTKPELYTMKVLSSLASMKRRHADCQIVKRKGTLYVIC HHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEE KSNPKFKARQGATAGTRLSKKGVK CCCCCCCCCCCCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA