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The map label for this gene is rplY

Identifier: 187735963

GI number: 187735963

Start: 1763479

End: 1764084

Strand: Direct

Name: rplY

Synonym: Amuc_1472

Alternate gene names: 187735963

Gene position: 1763479-1764084 (Clockwise)

Preceding gene: 187735962

Following gene: 187735964

Centisome position: 66.19

GC content: 57.26

Gene sequence:

>606_bases
ATGGCTACATCCCATTCCCTCAAGGCCGAAACGAGAGCCTGCGGCTCCGGTAATCTGAAGCAACTCCGCAGCCAGGGCCT
GGTTCCCGGCGTGGTTTACGGTCCCGGTTTTGACAACGTCAATATCCAGGTTGACGCCCGTGAATTTGCCCGCATGCTGG
CTTCCGCCGTTTCCGAACACATCCTCGTGGCCCTGGATATCAACGGCAAGATCGTGAAGGTTCTCCTTAAGGAAGTGCAG
CACAACCCCATCACCAACGCCTGCCTGCATGTGGACTTTCAGGCTGTGACCGATACCACGGTCATCCATTCCATTGTTCC
CGTCATTCTGGAAGGCGATTCCGCCGGCGTGGCCCTGGGCGGCGTTCTGGACCAGACCATTCACGAACTGGCGATTATCT
GCCAGGTGAAGGATCTGCCGGAAGCCATTACCGCTGACATTTCCGGTTTGAAACTGGGTGAAAGCCTGCGCATTACCGAT
CTCAAACTCCCCTCCGGCGTAACCACGGAACTGGCCGGGGATGTGATTGTGGCTATTGTGGAAGCTCCCCGTGTTTCCGG
CGAGGAAGCGGCTCCGGCTGCTGAAGAAGCTGTTGCCGAGAAATAA

Upstream 100 bases:

>100_bases
GAGTACCGGTTTACGCGGGTTCGGAAATCCCGGCGGGGCCTCTGCCTGAACCCGATTAGGAAACATCATCAATCAACACT
CAATATTGCCTCTATAAAAC

Downstream 100 bases:

>100_bases
GTTTGATACGCCTGTTTCTTCTTTTACCGGGTCCGGAGCCGTTTTTGCGGCTCCGGGCTTTTTTTTGTCGCCAACAGGGC
ATCTTTTGGTAAAGTGCAGG

Product: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MATSHSLKAETRACGSGNLKQLRSQGLVPGVVYGPGFDNVNIQVDAREFARMLASAVSEHILVALDINGKIVKVLLKEVQ
HNPITNACLHVDFQAVTDTTVIHSIVPVILEGDSAGVALGGVLDQTIHELAIICQVKDLPEAITADISGLKLGESLRITD
LKLPSGVTTELAGDVIVAIVEAPRVSGEEAAPAAEEAVAEK

Sequences:

>Translated_201_residues
MATSHSLKAETRACGSGNLKQLRSQGLVPGVVYGPGFDNVNIQVDAREFARMLASAVSEHILVALDINGKIVKVLLKEVQ
HNPITNACLHVDFQAVTDTTVIHSIVPVILEGDSAGVALGGVLDQTIHELAIICQVKDLPEAITADISGLKLGESLRITD
LKLPSGVTTELAGDVIVAIVEAPRVSGEEAAPAAEEAVAEK
>Mature_200_residues
ATSHSLKAETRACGSGNLKQLRSQGLVPGVVYGPGFDNVNIQVDAREFARMLASAVSEHILVALDINGKIVKVLLKEVQH
NPITNACLHVDFQAVTDTTVIHSIVPVILEGDSAGVALGGVLDQTIHELAIICQVKDLPEAITADISGLKLGESLRITDL
KLPSGVTTELAGDVIVAIVEAPRVSGEEAAPAAEEAVAEK

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_AKKM8 (B2UL21)

Other databases:

- EMBL:   CP001071
- RefSeq:   YP_001878075.1
- ProteinModelPortal:   B2UL21
- SMR:   B2UL21
- GeneID:   6275710
- GenomeReviews:   CP001071_GR
- KEGG:   amu:Amuc_1472
- HOGENOM:   HBG731986
- OMA:   LNIVRHE
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 21011; Mature: 20880

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATSHSLKAETRACGSGNLKQLRSQGLVPGVVYGPGFDNVNIQVDAREFARMLASAVSEH
CCCCCCCCHHHHCCCCCCHHHHHHCCCCCEEEECCCCCCEEEEECHHHHHHHHHHHHHCC
ILVALDINGKIVKVLLKEVQHNPITNACLHVDFQAVTDTTVIHSIVPVILEGDSAGVALG
EEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHEECCCCCCEEEH
GVLDQTIHELAIICQVKDLPEAITADISGLKLGESLRITDLKLPSGVTTELAGDVIVAIV
HHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHCCCEEEEEE
EAPRVSGEEAAPAAEEAVAEK
ECCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure 
ATSHSLKAETRACGSGNLKQLRSQGLVPGVVYGPGFDNVNIQVDAREFARMLASAVSEH
CCCCCCCHHHHCCCCCCHHHHHHCCCCCEEEECCCCCCEEEEECHHHHHHHHHHHHHCC
ILVALDINGKIVKVLLKEVQHNPITNACLHVDFQAVTDTTVIHSIVPVILEGDSAGVALG
EEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHEECCCCCCEEEH
GVLDQTIHELAIICQVKDLPEAITADISGLKLGESLRITDLKLPSGVTTELAGDVIVAIV
HHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHCCCEEEEEE
EAPRVSGEEAAPAAEEAVAEK
ECCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA