Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

Click here to switch to the map view.

The map label for this gene is 187735948

Identifier: 187735948

GI number: 187735948

Start: 1749001

End: 1749786

Strand: Direct

Name: 187735948

Synonym: Amuc_1457

Alternate gene names: NA

Gene position: 1749001-1749786 (Clockwise)

Preceding gene: 187735946

Following gene: 187735949

Centisome position: 65.65

GC content: 60.94

Gene sequence:

>786_bases
GTGACGAGATTCAGACCATGCATTGATTTACACGGCGGGCGCGTGAAGCAGATTGTGGGCGGCACCCTGACGCAGGATGG
CGTTTCATTGCGCACCAATTTCGTCTCCGACCGCGGCGCGGCATGGTATGCGGATTTGTACCGCAGGGACGGTCTGAGCG
GAGGGCATGTGATCAAGCTGGGCCCAGGGAACGACCATGCGGCGCGGGAGGCCCTGGCGGCATGGCCGGGAGGCCTTCAG
GTGGGCGGCGGCATGACGCCGGAAAACGCGGAGGAATGGATTTCCGCCGGGGCCAGCCATGTGATTGTTACCTCCTGCCT
GTTTGATGCGGAGGGAACGCTGCGGATGGACAGGCTGAAGGATCTTGTTTCCGCAGTGGGCGCGGAACGGCTGGTGCTGG
ATTTGAGCTGCCGCAGGGTTCAGGGAGGCTGGGCCGTAGCTATGAACCGGTGGCAGACTTTGACGGAACTCCGGGTAACG
GCGGAGACGCTGGATGTTCTGGCGGAACATTGCGCGGAGTTTCTTATTCATGCGGCGGATGTGGAAGGGCTCTGTTCCGG
CATTGACCGGGAACTGGTGGAAATGCTGGGAAACTGGCGCCGTCTGCCCATGACATATGCCGGAGGCATCAGCCGCATTC
AGGATATTGACGAAATAGACGCTTTGAGCGGCGGAACCATGGATGCCACGGTGGGGAGCGCTTTGGATTTGTTTGGCGGC
GGTTTAATCAGGTACGGGGATCTGGTGGCCAGGCAGCGCGGGAAGTCCGGCATGGAAACGGTATGA

Upstream 100 bases:

>100_bases
CCCCGTCCCGTTTTGTGTAATTTTCCATGCCCGTCATTCAGGGAGGGGGTAAGGGGAATACCGTCTTGACCTGGAGGGGA
GCCCCGGGCAAAGTGACCGC

Downstream 100 bases:

>100_bases
AACTGGCTCTGAAAGTTATTCCCAATGCGAAGAAGAGCGAGGCCGTGGGATGGGAGGAAGATCCCCGTGCCGGCCGCGCG
CTGAAGCTGCGCATTGCCGC

Product: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Products: 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-; $phosphoribosyl)imidazole-4-carboxamide

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTRFRPCIDLHGGRVKQIVGGTLTQDGVSLRTNFVSDRGAAWYADLYRRDGLSGGHVIKLGPGNDHAAREALAAWPGGLQ
VGGGMTPENAEEWISAGASHVIVTSCLFDAEGTLRMDRLKDLVSAVGAERLVLDLSCRRVQGGWAVAMNRWQTLTELRVT
AETLDVLAEHCAEFLIHAADVEGLCSGIDRELVEMLGNWRRLPMTYAGGISRIQDIDEIDALSGGTMDATVGSALDLFGG
GLIRYGDLVARQRGKSGMETV

Sequences:

>Translated_261_residues
MTRFRPCIDLHGGRVKQIVGGTLTQDGVSLRTNFVSDRGAAWYADLYRRDGLSGGHVIKLGPGNDHAAREALAAWPGGLQ
VGGGMTPENAEEWISAGASHVIVTSCLFDAEGTLRMDRLKDLVSAVGAERLVLDLSCRRVQGGWAVAMNRWQTLTELRVT
AETLDVLAEHCAEFLIHAADVEGLCSGIDRELVEMLGNWRRLPMTYAGGISRIQDIDEIDALSGGTMDATVGSALDLFGG
GLIRYGDLVARQRGKSGMETV
>Mature_260_residues
TRFRPCIDLHGGRVKQIVGGTLTQDGVSLRTNFVSDRGAAWYADLYRRDGLSGGHVIKLGPGNDHAAREALAAWPGGLQV
GGGMTPENAEEWISAGASHVIVTSCLFDAEGTLRMDRLKDLVSAVGAERLVLDLSCRRVQGGWAVAMNRWQTLTELRVTA
ETLDVLAEHCAEFLIHAADVEGLCSGIDRELVEMLGNWRRLPMTYAGGISRIQDIDEIDALSGGTMDATVGSALDLFGGG
LIRYGDLVARQRGKSGMETV

Specific function: Unknown

COG id: COG0106

COG function: function code E; Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6322169, Length=253, Percent_Identity=52.5691699604743, Blast_Score=252, Evalue=4e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 5.3.1.16

Molecular weight: Translated: 28053; Mature: 27922

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TRFRPCIDLHGGRVKQIVGGTLTQDGVSLRTNFVSDRGAAWYADLYRRDGLSGGHVIKL
CCCCCCHHCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEE
GPGNDHAAREALAAWPGGLQVGGGMTPENAEEWISAGASHVIVTSCLFDAEGTLRMDRLK
CCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHH
DLVSAVGAERLVLDLSCRRVQGGWAVAMNRWQTLTELRVTAETLDVLAEHCAEFLIHAAD
HHHHHHCHHHEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEGLCSGIDRELVEMLGNWRRLPMTYAGGISRIQDIDEIDALSGGTMDATVGSALDLFGG
HHHHHHHCCHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
GLIRYGDLVARQRGKSGMETV
CHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 1-(5-phosphoribosyl)-5-[(5-; $phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

Specific reaction: 1-(5-phosphoribosyl)-5-[(5- $phosphoribosylamino)methylideneamino]imidazole-4-carboxamide = 5- $[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5- $phosphoribosyl)imidazole-4-carboxamide

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA