Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735948
Identifier: 187735948
GI number: 187735948
Start: 1749001
End: 1749786
Strand: Direct
Name: 187735948
Synonym: Amuc_1457
Alternate gene names: NA
Gene position: 1749001-1749786 (Clockwise)
Preceding gene: 187735946
Following gene: 187735949
Centisome position: 65.65
GC content: 60.94
Gene sequence:
>786_bases GTGACGAGATTCAGACCATGCATTGATTTACACGGCGGGCGCGTGAAGCAGATTGTGGGCGGCACCCTGACGCAGGATGG CGTTTCATTGCGCACCAATTTCGTCTCCGACCGCGGCGCGGCATGGTATGCGGATTTGTACCGCAGGGACGGTCTGAGCG GAGGGCATGTGATCAAGCTGGGCCCAGGGAACGACCATGCGGCGCGGGAGGCCCTGGCGGCATGGCCGGGAGGCCTTCAG GTGGGCGGCGGCATGACGCCGGAAAACGCGGAGGAATGGATTTCCGCCGGGGCCAGCCATGTGATTGTTACCTCCTGCCT GTTTGATGCGGAGGGAACGCTGCGGATGGACAGGCTGAAGGATCTTGTTTCCGCAGTGGGCGCGGAACGGCTGGTGCTGG ATTTGAGCTGCCGCAGGGTTCAGGGAGGCTGGGCCGTAGCTATGAACCGGTGGCAGACTTTGACGGAACTCCGGGTAACG GCGGAGACGCTGGATGTTCTGGCGGAACATTGCGCGGAGTTTCTTATTCATGCGGCGGATGTGGAAGGGCTCTGTTCCGG CATTGACCGGGAACTGGTGGAAATGCTGGGAAACTGGCGCCGTCTGCCCATGACATATGCCGGAGGCATCAGCCGCATTC AGGATATTGACGAAATAGACGCTTTGAGCGGCGGAACCATGGATGCCACGGTGGGGAGCGCTTTGGATTTGTTTGGCGGC GGTTTAATCAGGTACGGGGATCTGGTGGCCAGGCAGCGCGGGAAGTCCGGCATGGAAACGGTATGA
Upstream 100 bases:
>100_bases CCCCGTCCCGTTTTGTGTAATTTTCCATGCCCGTCATTCAGGGAGGGGGTAAGGGGAATACCGTCTTGACCTGGAGGGGA GCCCCGGGCAAAGTGACCGC
Downstream 100 bases:
>100_bases AACTGGCTCTGAAAGTTATTCCCAATGCGAAGAAGAGCGAGGCCGTGGGATGGGAGGAAGATCCCCGTGCCGGCCGCGCG CTGAAGCTGCGCATTGCCGC
Product: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Products: 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-; $phosphoribosyl)imidazole-4-carboxamide
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MTRFRPCIDLHGGRVKQIVGGTLTQDGVSLRTNFVSDRGAAWYADLYRRDGLSGGHVIKLGPGNDHAAREALAAWPGGLQ VGGGMTPENAEEWISAGASHVIVTSCLFDAEGTLRMDRLKDLVSAVGAERLVLDLSCRRVQGGWAVAMNRWQTLTELRVT AETLDVLAEHCAEFLIHAADVEGLCSGIDRELVEMLGNWRRLPMTYAGGISRIQDIDEIDALSGGTMDATVGSALDLFGG GLIRYGDLVARQRGKSGMETV
Sequences:
>Translated_261_residues MTRFRPCIDLHGGRVKQIVGGTLTQDGVSLRTNFVSDRGAAWYADLYRRDGLSGGHVIKLGPGNDHAAREALAAWPGGLQ VGGGMTPENAEEWISAGASHVIVTSCLFDAEGTLRMDRLKDLVSAVGAERLVLDLSCRRVQGGWAVAMNRWQTLTELRVT AETLDVLAEHCAEFLIHAADVEGLCSGIDRELVEMLGNWRRLPMTYAGGISRIQDIDEIDALSGGTMDATVGSALDLFGG GLIRYGDLVARQRGKSGMETV >Mature_260_residues TRFRPCIDLHGGRVKQIVGGTLTQDGVSLRTNFVSDRGAAWYADLYRRDGLSGGHVIKLGPGNDHAAREALAAWPGGLQV GGGMTPENAEEWISAGASHVIVTSCLFDAEGTLRMDRLKDLVSAVGAERLVLDLSCRRVQGGWAVAMNRWQTLTELRVTA ETLDVLAEHCAEFLIHAADVEGLCSGIDRELVEMLGNWRRLPMTYAGGISRIQDIDEIDALSGGTMDATVGSALDLFGGG LIRYGDLVARQRGKSGMETV
Specific function: Unknown
COG id: COG0106
COG function: function code E; Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6322169, Length=253, Percent_Identity=52.5691699604743, Blast_Score=252, Evalue=4e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 5.3.1.16
Molecular weight: Translated: 28053; Mature: 27922
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRFRPCIDLHGGRVKQIVGGTLTQDGVSLRTNFVSDRGAAWYADLYRRDGLSGGHVIKL CCCCCCCHHCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEE GPGNDHAAREALAAWPGGLQVGGGMTPENAEEWISAGASHVIVTSCLFDAEGTLRMDRLK CCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHH DLVSAVGAERLVLDLSCRRVQGGWAVAMNRWQTLTELRVTAETLDVLAEHCAEFLIHAAD HHHHHHCHHHEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEGLCSGIDRELVEMLGNWRRLPMTYAGGISRIQDIDEIDALSGGTMDATVGSALDLFGG HHHHHHHCCHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC GLIRYGDLVARQRGKSGMETV CHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TRFRPCIDLHGGRVKQIVGGTLTQDGVSLRTNFVSDRGAAWYADLYRRDGLSGGHVIKL CCCCCCHHCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEE GPGNDHAAREALAAWPGGLQVGGGMTPENAEEWISAGASHVIVTSCLFDAEGTLRMDRLK CCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHH DLVSAVGAERLVLDLSCRRVQGGWAVAMNRWQTLTELRVTAETLDVLAEHCAEFLIHAAD HHHHHHCHHHEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEGLCSGIDRELVEMLGNWRRLPMTYAGGISRIQDIDEIDALSGGTMDATVGSALDLFGG HHHHHHHCCHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC GLIRYGDLVARQRGKSGMETV CHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 1-(5-phosphoribosyl)-5-[(5-; $phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
Specific reaction: 1-(5-phosphoribosyl)-5-[(5- $phosphoribosylamino)methylideneamino]imidazole-4-carboxamide = 5- $[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5- $phosphoribosyl)imidazole-4-carboxamide
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA