Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735934
Identifier: 187735934
GI number: 187735934
Start: 1732600
End: 1733982
Strand: Direct
Name: 187735934
Synonym: Amuc_1443
Alternate gene names: NA
Gene position: 1732600-1733982 (Clockwise)
Preceding gene: 187735931
Following gene: 187735935
Centisome position: 65.04
GC content: 56.11
Gene sequence:
>1383_bases ATGATTGAAACGATTACAGAAGAACAGTTGACTCCCCAGCAGGCCGAATTTTGGGTGCGCGCCCGCCAGGCGGTGGACAT GAACAATTATCCCTATGCCGTCAGCCTGCTCAAGGCCCTGGTAAAGCAGCTCCCCGGTTTTCTGGAAGGCCGCAAGGCGT TGCGCGCCTGTGAAATCAAATTGAATCCGGAGGCCAAGAGAGGGGGGCTGTTCAGCGGTATGAAAATCAGCACCAGCAAG CTCACTTCTTCCAAGAAGGACGCGGCTACCCAGCTTTCCGCTCTGGAAGACGAATTGGAAAATGATCCTTACAGCATTCC GGTAAACGAGGCCCTGTACACGGCTGCCATGGAAGTAAATTTCCCGGATCTGGCCGCTTTTGCTCTGGAGACCGTTCGCC AGGGGCATCCCGGCAACAAGAAAATGCTCCACATGCTGGCCTCCCATTACGTTTCCCGGGATATGCCGGCCCAGGCTGCG GAAGTGTACCATGACCTTGTGAAGCTGGATCCCACGGACAGTGTGGCCGTAAAGAGCGAAAAGGACTGCATGGCGCGCGC CACGATGCAGCAGCAGAAGTGGGAGGAGGCTAAAAGCTTCCGGGACGTGATGAAGAACTCGTCGGAAACGAACACCCTGG ACAAGAGCGACAAGAAAGGGCTCACCCGTGCGGAACTGGAAGAGCGCCTGGGGCTTCTCTCCGCCCGTTACGCCCAGAAC CAGCAGGATCTGGCCGTCGTGCGCGACATTGCCGGCGTTTATGAACAAATGGAAGATTGGGCCAATGCCTATTCCTTCTA TAATTACGCGTTCAGCCTCAGCAACAATGATATTTCCCTGGAAAACAAGGCCTCGGAAATGAATGAGCGATGCCGCAAGG CCCAGGTGGAGGAAATCCGCCGCCGCGCTGCCGCGGAGCCGGATAATAAGGAACTTCAGGAACAGCTTGCCCAGTTCAGC AAGGAAGCTGCGGAGCAGCAGGTGGCCTTGTGCCGCCAGCGTGTGGAAAACAACCCCACGGACCCGCAAACCCGTTTTGA GCTGGGCCAGGCCCTCTTCGACTGCGGCAATTACACGGAAGCCATTCCGGAACTCCAGCGCGCCCGCAACAATCCCCATA TCCGCATCCGCGCCATGCTGTTGCTCGGCAAGTGCTATGACGCCAAGAACATGCATGATATGGCTCTGCGCCAGCTGGAG GAAGCCAATAAGGAATTGATAGAAATGAATGACACCAAGAAGGAAATCCTTTACATGATCGGCTTGCTTTGTGAAAAGCA GGGCAAGAAGGGGGAATCCCTGGCTGCATTCCAGCAGATTTACGACGCCGAGTACGGCTACCGCGACGTAGCCAGGCGCG TGGAATCCTCTTACGGCAATTAG
Upstream 100 bases:
>100_bases GTTGAAGTATGCCTCCCCGGCTGATAGCATTAAACTATTACATGCGGGGCCGCCCTGGTGGGGCGCTGCCGTTGTTCACC ATTTACGCTTATATAGTTCC
Downstream 100 bases:
>100_bases GGGGGTCCCGTTTTGCGCCCGTAATGGGACGCCGTGCTCAAAGCCTTTGCCGGAAACGGCAAAGGCTTTGCTGTAGGAAG GTTATTTTTATTTCTGCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 460; Mature: 460
Protein sequence:
>460_residues MIETITEEQLTPQQAEFWVRARQAVDMNNYPYAVSLLKALVKQLPGFLEGRKALRACEIKLNPEAKRGGLFSGMKISTSK LTSSKKDAATQLSALEDELENDPYSIPVNEALYTAAMEVNFPDLAAFALETVRQGHPGNKKMLHMLASHYVSRDMPAQAA EVYHDLVKLDPTDSVAVKSEKDCMARATMQQQKWEEAKSFRDVMKNSSETNTLDKSDKKGLTRAELEERLGLLSARYAQN QQDLAVVRDIAGVYEQMEDWANAYSFYNYAFSLSNNDISLENKASEMNERCRKAQVEEIRRRAAAEPDNKELQEQLAQFS KEAAEQQVALCRQRVENNPTDPQTRFELGQALFDCGNYTEAIPELQRARNNPHIRIRAMLLLGKCYDAKNMHDMALRQLE EANKELIEMNDTKKEILYMIGLLCEKQGKKGESLAAFQQIYDAEYGYRDVARRVESSYGN
Sequences:
>Translated_460_residues MIETITEEQLTPQQAEFWVRARQAVDMNNYPYAVSLLKALVKQLPGFLEGRKALRACEIKLNPEAKRGGLFSGMKISTSK LTSSKKDAATQLSALEDELENDPYSIPVNEALYTAAMEVNFPDLAAFALETVRQGHPGNKKMLHMLASHYVSRDMPAQAA EVYHDLVKLDPTDSVAVKSEKDCMARATMQQQKWEEAKSFRDVMKNSSETNTLDKSDKKGLTRAELEERLGLLSARYAQN QQDLAVVRDIAGVYEQMEDWANAYSFYNYAFSLSNNDISLENKASEMNERCRKAQVEEIRRRAAAEPDNKELQEQLAQFS KEAAEQQVALCRQRVENNPTDPQTRFELGQALFDCGNYTEAIPELQRARNNPHIRIRAMLLLGKCYDAKNMHDMALRQLE EANKELIEMNDTKKEILYMIGLLCEKQGKKGESLAAFQQIYDAEYGYRDVARRVESSYGN >Mature_460_residues MIETITEEQLTPQQAEFWVRARQAVDMNNYPYAVSLLKALVKQLPGFLEGRKALRACEIKLNPEAKRGGLFSGMKISTSK LTSSKKDAATQLSALEDELENDPYSIPVNEALYTAAMEVNFPDLAAFALETVRQGHPGNKKMLHMLASHYVSRDMPAQAA EVYHDLVKLDPTDSVAVKSEKDCMARATMQQQKWEEAKSFRDVMKNSSETNTLDKSDKKGLTRAELEERLGLLSARYAQN QQDLAVVRDIAGVYEQMEDWANAYSFYNYAFSLSNNDISLENKASEMNERCRKAQVEEIRRRAAAEPDNKELQEQLAQFS KEAAEQQVALCRQRVENNPTDPQTRFELGQALFDCGNYTEAIPELQRARNNPHIRIRAMLLLGKCYDAKNMHDMALRQLE EANKELIEMNDTKKEILYMIGLLCEKQGKKGESLAAFQQIYDAEYGYRDVARRVESSYGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52291; Mature: 52291
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: PS50293 TPR_REGION L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIETITEEQLTPQQAEFWVRARQAVDMNNYPYAVSLLKALVKQLPGFLEGRKALRACEIK CCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHEE LNPEAKRGGLFSGMKISTSKLTSSKKDAATQLSALEDELENDPYSIPVNEALYTAAMEVN ECCCHHCCCCCCCCEECHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC FPDLAAFALETVRQGHPGNKKMLHMLASHYVSRDMPAQAAEVYHDLVKLDPTDSVAVKSE CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEECCCH KDCMARATMQQQKWEEAKSFRDVMKNSSETNTLDKSDKKGLTRAELEERLGLLSARYAQN HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCC QQDLAVVRDIAGVYEQMEDWANAYSFYNYAFSLSNNDISLENKASEMNERCRKAQVEEIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH RRAAAEPDNKELQEQLAQFSKEAAEQQVALCRQRVENNPTDPQTRFELGQALFDCGNYTE HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH AIPELQRARNNPHIRIRAMLLLGKCYDAKNMHDMALRQLEEANKELIEMNDTKKEILYMI HHHHHHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH GLLCEKQGKKGESLAAFQQIYDAEYGYRDVARRVESSYGN HHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCC >Mature Secondary Structure MIETITEEQLTPQQAEFWVRARQAVDMNNYPYAVSLLKALVKQLPGFLEGRKALRACEIK CCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHEE LNPEAKRGGLFSGMKISTSKLTSSKKDAATQLSALEDELENDPYSIPVNEALYTAAMEVN ECCCHHCCCCCCCCEECHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC FPDLAAFALETVRQGHPGNKKMLHMLASHYVSRDMPAQAAEVYHDLVKLDPTDSVAVKSE CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEECCCH KDCMARATMQQQKWEEAKSFRDVMKNSSETNTLDKSDKKGLTRAELEERLGLLSARYAQN HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCC QQDLAVVRDIAGVYEQMEDWANAYSFYNYAFSLSNNDISLENKASEMNERCRKAQVEEIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH RRAAAEPDNKELQEQLAQFSKEAAEQQVALCRQRVENNPTDPQTRFELGQALFDCGNYTE HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH AIPELQRARNNPHIRIRAMLLLGKCYDAKNMHDMALRQLEEANKELIEMNDTKKEILYMI HHHHHHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH GLLCEKQGKKGESLAAFQQIYDAEYGYRDVARRVESSYGN HHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA