Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is ybeQ [C]

Identifier: 187735896

GI number: 187735896

Start: 1676665

End: 1677786

Strand: Reverse

Name: ybeQ [C]

Synonym: Amuc_1404

Alternate gene names: 187735896

Gene position: 1677786-1676665 (Counterclockwise)

Preceding gene: 187735912

Following gene: 187735890

Centisome position: 62.98

GC content: 54.63

Gene sequence:

>1122_bases
ATGAAATTGACCAATTGCTATCGCTACATGGCTGTGCTTTATACAGCTTCCTGCGGCGCCGCCTCGCCTCTTTACGGCCC
CCTGGAAACAGGTTTGCAGGAATCCCAGCTTCTGAATTCCCTGAAAACCTGCAAATCCCTGGAAGGGCCGGAAACAGACG
CCTACCTGAGCCGTACAGGGCTGAACGGAGCCTACAAGACGAAAAAACCTATTGGAGGCCTTTTCTTCTCCCTGCATTTC
GAGTACGGAAAGGATGGAGGTCTGAAAGCCGTTTCCTTTTACTCCACCACCAAAGCGGGTAAAGAGGAATACGATACGCG
CCTGAAATCCCTGTACAAGCGCATGCTGAACGGCCTGACGGGAATTTACGGCCCCCCCATGAACCTGCCGGACTGGATTG
AGAAGGAATCTCTGCCAGCAGAGCGCGTTTTGTACATGCACATGTGGCGCCTCCAGCCGGGCTGCTTTCTGATGGCCGGG
CTGGCCAATATGGGCGCTTCCGGCTACATTCCCGTTTTCCGAATATCCCCGCCTTCCGGCATGCCTCCAAAATCCAGGAA
AGATAGGAACAAACTTAAATCCGAATGGGCGGCTATTCCCGAATTTTACGAATTCATCAAAGCGGAACGCTTCCTGGCCA
ATGCGGTATTCGCCATGTCCCATAAAAAATACCCGGACGCGCTGCAGCTCTTCCAAAAAGCGGCGGATCTGGGCAGCCCC
AACGGATACTGGGGACTGGCCCACCTGTACAGGCTGGGACCCGACGGAGTGGAAAAAAACATGCGCCTGGCGGATGAATA
CACCAGAAAATCCGCCCTGTCGGGATTTGCGAGGGCTGCCATGAAATTCGGAAAAACGTGGGACCAATTCTGCAAGAGCC
AGGACTTCACGGAAGCGGAAGCCAGGGAATGGCAAAACAGGAATCTTCGCGCCGCCAGAGCCGGCTACGCCTCCGAGCAA
TACAACATGGGAATCATCTGCCTGTACGGATTCGGCGTGGAAAAAAACCTAGAAACTGCCCGGGAATGGCTGGAAAAGGC
AGCCTCCCAGGACCATGCACAGGCCAAAGCGGCATTAAAAGCATTGCCCGATGCCGGGACAGGTAAAGACACTCCCTCCT
GA

Upstream 100 bases:

>100_bases
TTGTAATATACTTGCTTTTCACAGAAACATCTTTGAACACTTCATTCGGATTCCTAATCCGCTATTGAAGCACCACTTCC
ATCCCTGCCCTATCTATCCC

Downstream 100 bases:

>100_bases
ACCATCTCCCAACAACCAGTTCCCCATATCAAGCCGGCTGCGCTTTCCCCCGGAAGCGCACAGAGCCGCTCCGGCACCCC
TATGAAACACCGGACCGGCA

Product: Sel1 domain protein repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MKLTNCYRYMAVLYTASCGAASPLYGPLETGLQESQLLNSLKTCKSLEGPETDAYLSRTGLNGAYKTKKPIGGLFFSLHF
EYGKDGGLKAVSFYSTTKAGKEEYDTRLKSLYKRMLNGLTGIYGPPMNLPDWIEKESLPAERVLYMHMWRLQPGCFLMAG
LANMGASGYIPVFRISPPSGMPPKSRKDRNKLKSEWAAIPEFYEFIKAERFLANAVFAMSHKKYPDALQLFQKAADLGSP
NGYWGLAHLYRLGPDGVEKNMRLADEYTRKSALSGFARAAMKFGKTWDQFCKSQDFTEAEAREWQNRNLRAARAGYASEQ
YNMGIICLYGFGVEKNLETAREWLEKAASQDHAQAKAALKALPDAGTGKDTPS

Sequences:

>Translated_373_residues
MKLTNCYRYMAVLYTASCGAASPLYGPLETGLQESQLLNSLKTCKSLEGPETDAYLSRTGLNGAYKTKKPIGGLFFSLHF
EYGKDGGLKAVSFYSTTKAGKEEYDTRLKSLYKRMLNGLTGIYGPPMNLPDWIEKESLPAERVLYMHMWRLQPGCFLMAG
LANMGASGYIPVFRISPPSGMPPKSRKDRNKLKSEWAAIPEFYEFIKAERFLANAVFAMSHKKYPDALQLFQKAADLGSP
NGYWGLAHLYRLGPDGVEKNMRLADEYTRKSALSGFARAAMKFGKTWDQFCKSQDFTEAEAREWQNRNLRAARAGYASEQ
YNMGIICLYGFGVEKNLETAREWLEKAASQDHAQAKAALKALPDAGTGKDTPS
>Mature_373_residues
MKLTNCYRYMAVLYTASCGAASPLYGPLETGLQESQLLNSLKTCKSLEGPETDAYLSRTGLNGAYKTKKPIGGLFFSLHF
EYGKDGGLKAVSFYSTTKAGKEEYDTRLKSLYKRMLNGLTGIYGPPMNLPDWIEKESLPAERVLYMHMWRLQPGCFLMAG
LANMGASGYIPVFRISPPSGMPPKSRKDRNKLKSEWAAIPEFYEFIKAERFLANAVFAMSHKKYPDALQLFQKAADLGSP
NGYWGLAHLYRLGPDGVEKNMRLADEYTRKSALSGFARAAMKFGKTWDQFCKSQDFTEAEAREWQNRNLRAARAGYASEQ
YNMGIICLYGFGVEKNLETAREWLEKAASQDHAQAKAALKALPDAGTGKDTPS

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41629; Mature: 41629

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTNCYRYMAVLYTASCGAASPLYGPLETGLQESQLLNSLKTCKSLEGPETDAYLSRTG
CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHCC
LNGAYKTKKPIGGLFFSLHFEYGKDGGLKAVSFYSTTKAGKEEYDTRLKSLYKRMLNGLT
CCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHC
GIYGPPMNLPDWIEKESLPAERVLYMHMWRLQPGCFLMAGLANMGASGYIPVFRISPPSG
CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCC
MPPKSRKDRNKLKSEWAAIPEFYEFIKAERFLANAVFAMSHKKYPDALQLFQKAADLGSP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
NGYWGLAHLYRLGPDGVEKNMRLADEYTRKSALSGFARAAMKFGKTWDQFCKSQDFTEAE
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHH
AREWQNRNLRAARAGYASEQYNMGIICLYGFGVEKNLETAREWLEKAASQDHAQAKAALK
HHHHHCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALPDAGTGKDTPS
HCCCCCCCCCCCC
>Mature Secondary Structure
MKLTNCYRYMAVLYTASCGAASPLYGPLETGLQESQLLNSLKTCKSLEGPETDAYLSRTG
CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHCC
LNGAYKTKKPIGGLFFSLHFEYGKDGGLKAVSFYSTTKAGKEEYDTRLKSLYKRMLNGLT
CCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHC
GIYGPPMNLPDWIEKESLPAERVLYMHMWRLQPGCFLMAGLANMGASGYIPVFRISPPSG
CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCC
MPPKSRKDRNKLKSEWAAIPEFYEFIKAERFLANAVFAMSHKKYPDALQLFQKAADLGSP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
NGYWGLAHLYRLGPDGVEKNMRLADEYTRKSALSGFARAAMKFGKTWDQFCKSQDFTEAE
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHH
AREWQNRNLRAARAGYASEQYNMGIICLYGFGVEKNLETAREWLEKAASQDHAQAKAALK
HHHHHCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALPDAGTGKDTPS
HCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA