Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ybeQ [C]
Identifier: 187735896
GI number: 187735896
Start: 1676665
End: 1677786
Strand: Reverse
Name: ybeQ [C]
Synonym: Amuc_1404
Alternate gene names: 187735896
Gene position: 1677786-1676665 (Counterclockwise)
Preceding gene: 187735912
Following gene: 187735890
Centisome position: 62.98
GC content: 54.63
Gene sequence:
>1122_bases ATGAAATTGACCAATTGCTATCGCTACATGGCTGTGCTTTATACAGCTTCCTGCGGCGCCGCCTCGCCTCTTTACGGCCC CCTGGAAACAGGTTTGCAGGAATCCCAGCTTCTGAATTCCCTGAAAACCTGCAAATCCCTGGAAGGGCCGGAAACAGACG CCTACCTGAGCCGTACAGGGCTGAACGGAGCCTACAAGACGAAAAAACCTATTGGAGGCCTTTTCTTCTCCCTGCATTTC GAGTACGGAAAGGATGGAGGTCTGAAAGCCGTTTCCTTTTACTCCACCACCAAAGCGGGTAAAGAGGAATACGATACGCG CCTGAAATCCCTGTACAAGCGCATGCTGAACGGCCTGACGGGAATTTACGGCCCCCCCATGAACCTGCCGGACTGGATTG AGAAGGAATCTCTGCCAGCAGAGCGCGTTTTGTACATGCACATGTGGCGCCTCCAGCCGGGCTGCTTTCTGATGGCCGGG CTGGCCAATATGGGCGCTTCCGGCTACATTCCCGTTTTCCGAATATCCCCGCCTTCCGGCATGCCTCCAAAATCCAGGAA AGATAGGAACAAACTTAAATCCGAATGGGCGGCTATTCCCGAATTTTACGAATTCATCAAAGCGGAACGCTTCCTGGCCA ATGCGGTATTCGCCATGTCCCATAAAAAATACCCGGACGCGCTGCAGCTCTTCCAAAAAGCGGCGGATCTGGGCAGCCCC AACGGATACTGGGGACTGGCCCACCTGTACAGGCTGGGACCCGACGGAGTGGAAAAAAACATGCGCCTGGCGGATGAATA CACCAGAAAATCCGCCCTGTCGGGATTTGCGAGGGCTGCCATGAAATTCGGAAAAACGTGGGACCAATTCTGCAAGAGCC AGGACTTCACGGAAGCGGAAGCCAGGGAATGGCAAAACAGGAATCTTCGCGCCGCCAGAGCCGGCTACGCCTCCGAGCAA TACAACATGGGAATCATCTGCCTGTACGGATTCGGCGTGGAAAAAAACCTAGAAACTGCCCGGGAATGGCTGGAAAAGGC AGCCTCCCAGGACCATGCACAGGCCAAAGCGGCATTAAAAGCATTGCCCGATGCCGGGACAGGTAAAGACACTCCCTCCT GA
Upstream 100 bases:
>100_bases TTGTAATATACTTGCTTTTCACAGAAACATCTTTGAACACTTCATTCGGATTCCTAATCCGCTATTGAAGCACCACTTCC ATCCCTGCCCTATCTATCCC
Downstream 100 bases:
>100_bases ACCATCTCCCAACAACCAGTTCCCCATATCAAGCCGGCTGCGCTTTCCCCCGGAAGCGCACAGAGCCGCTCCGGCACCCC TATGAAACACCGGACCGGCA
Product: Sel1 domain protein repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 373; Mature: 373
Protein sequence:
>373_residues MKLTNCYRYMAVLYTASCGAASPLYGPLETGLQESQLLNSLKTCKSLEGPETDAYLSRTGLNGAYKTKKPIGGLFFSLHF EYGKDGGLKAVSFYSTTKAGKEEYDTRLKSLYKRMLNGLTGIYGPPMNLPDWIEKESLPAERVLYMHMWRLQPGCFLMAG LANMGASGYIPVFRISPPSGMPPKSRKDRNKLKSEWAAIPEFYEFIKAERFLANAVFAMSHKKYPDALQLFQKAADLGSP NGYWGLAHLYRLGPDGVEKNMRLADEYTRKSALSGFARAAMKFGKTWDQFCKSQDFTEAEAREWQNRNLRAARAGYASEQ YNMGIICLYGFGVEKNLETAREWLEKAASQDHAQAKAALKALPDAGTGKDTPS
Sequences:
>Translated_373_residues MKLTNCYRYMAVLYTASCGAASPLYGPLETGLQESQLLNSLKTCKSLEGPETDAYLSRTGLNGAYKTKKPIGGLFFSLHF EYGKDGGLKAVSFYSTTKAGKEEYDTRLKSLYKRMLNGLTGIYGPPMNLPDWIEKESLPAERVLYMHMWRLQPGCFLMAG LANMGASGYIPVFRISPPSGMPPKSRKDRNKLKSEWAAIPEFYEFIKAERFLANAVFAMSHKKYPDALQLFQKAADLGSP NGYWGLAHLYRLGPDGVEKNMRLADEYTRKSALSGFARAAMKFGKTWDQFCKSQDFTEAEAREWQNRNLRAARAGYASEQ YNMGIICLYGFGVEKNLETAREWLEKAASQDHAQAKAALKALPDAGTGKDTPS >Mature_373_residues MKLTNCYRYMAVLYTASCGAASPLYGPLETGLQESQLLNSLKTCKSLEGPETDAYLSRTGLNGAYKTKKPIGGLFFSLHF EYGKDGGLKAVSFYSTTKAGKEEYDTRLKSLYKRMLNGLTGIYGPPMNLPDWIEKESLPAERVLYMHMWRLQPGCFLMAG LANMGASGYIPVFRISPPSGMPPKSRKDRNKLKSEWAAIPEFYEFIKAERFLANAVFAMSHKKYPDALQLFQKAADLGSP NGYWGLAHLYRLGPDGVEKNMRLADEYTRKSALSGFARAAMKFGKTWDQFCKSQDFTEAEAREWQNRNLRAARAGYASEQ YNMGIICLYGFGVEKNLETAREWLEKAASQDHAQAKAALKALPDAGTGKDTPS
Specific function: Unknown
COG id: COG0790
COG function: function code R; FOG: TPR repeat, SEL1 subfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41629; Mature: 41629
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLTNCYRYMAVLYTASCGAASPLYGPLETGLQESQLLNSLKTCKSLEGPETDAYLSRTG CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHCC LNGAYKTKKPIGGLFFSLHFEYGKDGGLKAVSFYSTTKAGKEEYDTRLKSLYKRMLNGLT CCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHC GIYGPPMNLPDWIEKESLPAERVLYMHMWRLQPGCFLMAGLANMGASGYIPVFRISPPSG CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCC MPPKSRKDRNKLKSEWAAIPEFYEFIKAERFLANAVFAMSHKKYPDALQLFQKAADLGSP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC NGYWGLAHLYRLGPDGVEKNMRLADEYTRKSALSGFARAAMKFGKTWDQFCKSQDFTEAE CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHH AREWQNRNLRAARAGYASEQYNMGIICLYGFGVEKNLETAREWLEKAASQDHAQAKAALK HHHHHCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ALPDAGTGKDTPS HCCCCCCCCCCCC >Mature Secondary Structure MKLTNCYRYMAVLYTASCGAASPLYGPLETGLQESQLLNSLKTCKSLEGPETDAYLSRTG CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHCC LNGAYKTKKPIGGLFFSLHFEYGKDGGLKAVSFYSTTKAGKEEYDTRLKSLYKRMLNGLT CCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHC GIYGPPMNLPDWIEKESLPAERVLYMHMWRLQPGCFLMAGLANMGASGYIPVFRISPPSG CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCC MPPKSRKDRNKLKSEWAAIPEFYEFIKAERFLANAVFAMSHKKYPDALQLFQKAADLGSP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC NGYWGLAHLYRLGPDGVEKNMRLADEYTRKSALSGFARAAMKFGKTWDQFCKSQDFTEAE CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHH AREWQNRNLRAARAGYASEQYNMGIICLYGFGVEKNLETAREWLEKAASQDHAQAKAALK HHHHHCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ALPDAGTGKDTPS HCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA