Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ybhG [C]
Identifier: 187735875
GI number: 187735875
Start: 1647982
End: 1649004
Strand: Reverse
Name: ybhG [C]
Synonym: Amuc_1382
Alternate gene names: 187735875
Gene position: 1649004-1647982 (Counterclockwise)
Preceding gene: 187735878
Following gene: 187735874
Centisome position: 61.9
GC content: 62.27
Gene sequence:
>1023_bases ATGAAAAAGCTGGTTATCCTCCTGGTTCTCCTTGCGGCGGCAGGAACGGCCGCCTGGCTCATCTACCGGAAAACTCCGTC CGGGCCCGAGGACAAAGCCGTTCTTTACGGCAATGTGGACCTGCGCCAGGTGGATCTGGCTTTCCTCATCTCCGAACGTA TTGACTCCGTGCTGGTGGACGAAGGGGACACGGTTGTTCCCGGCCAGAAGCTCGCCACGCTGGAAACGGTGCGGCTCCGG CAGGCCGCGGACGAAGCCCGGCAGATAGCGGAAGCCGCCCGCCAAAACTACCTGCGCGTTAAAAACGGCCCGCGCGCGGA AGAAATAGCCCAGGCGAGGGCGAACGTGCAGGCCGCGGAAGCTACGCTGAACAACGCCGGAATGCGCAGCAAAAGGCTGG AGGCGCTGGCTGAAACAAAATCCATCTCCCGCCAGGAGGCGGACGACGCCGTCGCCTCCCGGCAAGTGGCCGCCGCCAAT CTGGACGTAGCCAGAAAACAGCTGGAACTGCTGCTGGCCGGTTCCCGTGAGGAAGACGTAGCCCAGGCGCTGGCCCAGTA CAACCAGGCCAAAGCCAGCCTGACCATCAGGGAGCAGAACCTGAAAGACGCCGTGCTCTATGCCCCCGGCAACGGCGTGG TGCGCAACCGCATTCTGGAAAAGGGGGACATGGCCTCCCCGCAGAAACCCGTTTACAACATCTCCCTGAACCATACCAAA TGGGTGCGGGCCTACCTCACGGAATCCCAGCTCGGCAAAGTAAAGCCCGGCTTTTCCGCCACCGTGCGCAATGACAGCTT CCCGGACACCGGCTTCAAAGGGACGGTGGGGTTTATCTCCTCCGTAGCGGAATTCACCCCTAAAAACGTGGAAACGCCGG ATCTCAGAACGGCACTGGTCTATGAAGTGCGCATCATTGTGGACGATCCGGACAACCGGCTGCGCCTGGGAGCCCCCGCC ACCGTCACCATCCCCCTGGACCAGAACGCCGGAACACAGCCCCCGGAACAGCCCAGGCCATGA
Upstream 100 bases:
>100_bases TATGCCTGTTCTCCCTCCGTTAGTAAATCGCTAATTCCTTCTCCGTCATGCGGGCTCCATTTTTACTTGCAATAAATTAT ACACACGTATAAATAAAACT
Downstream 100 bases:
>100_bases CCACGGAATCCCAGCCCCTGATTGACTGCCGGAACATCCGGAAAATATTTCCGGACTCCGCCGGCGTCCCCTTTGCGGCG GTGGACGACGTCTCCTTCCG
Product: secretion protein HlyD family protein
Products: NA
Alternate protein names: ORF1; Fragment [H]
Number of amino acids: Translated: 340; Mature: 340
Protein sequence:
>340_residues MKKLVILLVLLAAAGTAAWLIYRKTPSGPEDKAVLYGNVDLRQVDLAFLISERIDSVLVDEGDTVVPGQKLATLETVRLR QAADEARQIAEAARQNYLRVKNGPRAEEIAQARANVQAAEATLNNAGMRSKRLEALAETKSISRQEADDAVASRQVAAAN LDVARKQLELLLAGSREEDVAQALAQYNQAKASLTIREQNLKDAVLYAPGNGVVRNRILEKGDMASPQKPVYNISLNHTK WVRAYLTESQLGKVKPGFSATVRNDSFPDTGFKGTVGFISSVAEFTPKNVETPDLRTALVYEVRIIVDDPDNRLRLGAPA TVTIPLDQNAGTQPPEQPRP
Sequences:
>Translated_340_residues MKKLVILLVLLAAAGTAAWLIYRKTPSGPEDKAVLYGNVDLRQVDLAFLISERIDSVLVDEGDTVVPGQKLATLETVRLR QAADEARQIAEAARQNYLRVKNGPRAEEIAQARANVQAAEATLNNAGMRSKRLEALAETKSISRQEADDAVASRQVAAAN LDVARKQLELLLAGSREEDVAQALAQYNQAKASLTIREQNLKDAVLYAPGNGVVRNRILEKGDMASPQKPVYNISLNHTK WVRAYLTESQLGKVKPGFSATVRNDSFPDTGFKGTVGFISSVAEFTPKNVETPDLRTALVYEVRIIVDDPDNRLRLGAPA TVTIPLDQNAGTQPPEQPRP >Mature_340_residues MKKLVILLVLLAAAGTAAWLIYRKTPSGPEDKAVLYGNVDLRQVDLAFLISERIDSVLVDEGDTVVPGQKLATLETVRLR QAADEARQIAEAARQNYLRVKNGPRAEEIAQARANVQAAEATLNNAGMRSKRLEALAETKSISRQEADDAVASRQVAAAN LDVARKQLELLLAGSREEDVAQALAQYNQAKASLTIREQNLKDAVLYAPGNGVVRNRILEKGDMASPQKPVYNISLNHTK WVRAYLTESQLGKVKPGFSATVRNDSFPDTGFKGTVGFISSVAEFTPKNVETPDLRTALVYEVRIIVDDPDNRLRLGAPA TVTIPLDQNAGTQPPEQPRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0194 family [H]
Homologues:
Organism=Escherichia coli, GI1787013, Length=322, Percent_Identity=39.1304347826087, Blast_Score=191, Evalue=8e-50, Organism=Escherichia coli, GI1789900, Length=300, Percent_Identity=33, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1789041, Length=273, Percent_Identity=26.7399267399267, Blast_Score=65, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003997 - InterPro: IPR006143 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 37057; Mature: 37057
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLVILLVLLAAAGTAAWLIYRKTPSGPEDKAVLYGNVDLRQVDLAFLISERIDSVLVD CHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHEEEC EGDTVVPGQKLATLETVRLRQAADEARQIAEAARQNYLRVKNGPRAEEIAQARANVQAAE CCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHCHHHHH ATLNNAGMRSKRLEALAETKSISRQEADDAVASRQVAAANLDVARKQLELLLAGSREEDV HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH AQALAQYNQAKASLTIREQNLKDAVLYAPGNGVVRNRILEKGDMASPQKPVYNISLNHTK HHHHHHHHHHHEEEEEEECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEECCCHH WVRAYLTESQLGKVKPGFSATVRNDSFPDTGFKGTVGFISSVAEFTPKNVETPDLRTALV HHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEE YEVRIIVDDPDNRLRLGAPATVTIPLDQNAGTQPPEQPRP EEEEEEEECCCCCEEECCCEEEEEEECCCCCCCCCCCCCC >Mature Secondary Structure MKKLVILLVLLAAAGTAAWLIYRKTPSGPEDKAVLYGNVDLRQVDLAFLISERIDSVLVD CHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHEEEC EGDTVVPGQKLATLETVRLRQAADEARQIAEAARQNYLRVKNGPRAEEIAQARANVQAAE CCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHCHHHHH ATLNNAGMRSKRLEALAETKSISRQEADDAVASRQVAAANLDVARKQLELLLAGSREEDV HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH AQALAQYNQAKASLTIREQNLKDAVLYAPGNGVVRNRILEKGDMASPQKPVYNISLNHTK HHHHHHHHHHHEEEEEEECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEECCCHH WVRAYLTESQLGKVKPGFSATVRNDSFPDTGFKGTVGFISSVAEFTPKNVETPDLRTALV HHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEE YEVRIIVDDPDNRLRLGAPATVTIPLDQNAGTQPPEQPRP EEEEEEEECCCCCEEECCCEEEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10788346 [H]