Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is msrB [H]
Identifier: 187735822
GI number: 187735822
Start: 1606275
End: 1606721
Strand: Reverse
Name: msrB [H]
Synonym: Amuc_1329
Alternate gene names: 187735822
Gene position: 1606721-1606275 (Counterclockwise)
Preceding gene: 187735823
Following gene: 187735821
Centisome position: 60.31
GC content: 62.19
Gene sequence:
>447_bases ATGGCCGTGAATGGAGGGATTCCCGCCTCCCGGGACGTACCCGATCCCGGCCCTGCCCGCACGCGCCGCCCCCTCACGGA AACGGAAAAACGCATTATCGAACACCAGGGAACGGAACCGCCCTTTTCCGGGGAATTCGTCAGCTTCTTTGAGCCGGGCA TCTATTCCTGCCGCAAATGCGGTGCGCCTCTGTTCCGGTCGGAAGACAAATTCGATGCCGGATGCGGCTGGCCCTGTTTT GATGATTCCCTGCCGGACGCCGTCACAAGCGTCCATGCGGGCGGCGGGCGGCGCACGGAAATCACCTGCGCCCGCTGCGG AGGCCATCTGGGACACATTTTCAATGGAGAACGCCTGACTCCGAAGAATCTGCGCTACTGCGTCAATTCCCTTTCCCTGG AATTCCGGGCAGCCCCTCTTCCGATAGCGGCGGATGCCCCCCGTTAA
Upstream 100 bases:
>100_bases CAAAACCCGCTCCAACCTGGTCATAAGCCATATGAATCAGGAAGAACGGAGACACTGGGCGTCATGGATAGGCATGATTG CGGAAGGCGTGGCTGGAGTC
Downstream 100 bases:
>100_bases AGGCGTGCGGCAGGAAAAAAATATCCGGCCGCCCTTCCATGCGCTGCCGGATGCGGCCGCCGCGGCGGAATTTACCCTGA AATCCGTTCACGGCCCCGGA
Product: Methionine sulfoxide reductase B
Products: NA
Alternate protein names: Peptide-methionine (R)-S-oxide reductase [H]
Number of amino acids: Translated: 148; Mature: 147
Protein sequence:
>148_residues MAVNGGIPASRDVPDPGPARTRRPLTETEKRIIEHQGTEPPFSGEFVSFFEPGIYSCRKCGAPLFRSEDKFDAGCGWPCF DDSLPDAVTSVHAGGGRRTEITCARCGGHLGHIFNGERLTPKNLRYCVNSLSLEFRAAPLPIAADAPR
Sequences:
>Translated_148_residues MAVNGGIPASRDVPDPGPARTRRPLTETEKRIIEHQGTEPPFSGEFVSFFEPGIYSCRKCGAPLFRSEDKFDAGCGWPCF DDSLPDAVTSVHAGGGRRTEITCARCGGHLGHIFNGERLTPKNLRYCVNSLSLEFRAAPLPIAADAPR >Mature_147_residues AVNGGIPASRDVPDPGPARTRRPLTETEKRIIEHQGTEPPFSGEFVSFFEPGIYSCRKCGAPLFRSEDKFDAGCGWPCFD DSLPDAVTSVHAGGGRRTEITCARCGGHLGHIFNGERLTPKNLRYCVNSLSLEFRAAPLPIAADAPR
Specific function: Unknown
COG id: COG0229
COG function: function code O; Conserved domain frequently associated with peptide methionine sulfoxide reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the msrB Met sulfoxide reductase family [H]
Homologues:
Organism=Homo sapiens, GI301336164, Length=121, Percent_Identity=45.4545454545455, Blast_Score=106, Evalue=9e-24, Organism=Homo sapiens, GI301336162, Length=121, Percent_Identity=45.4545454545455, Blast_Score=106, Evalue=9e-24, Organism=Homo sapiens, GI73089054, Length=121, Percent_Identity=45.4545454545455, Blast_Score=106, Evalue=9e-24, Organism=Homo sapiens, GI37620216, Length=121, Percent_Identity=45.4545454545455, Blast_Score=105, Evalue=1e-23, Organism=Homo sapiens, GI117606353, Length=125, Percent_Identity=36.8, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI1788077, Length=124, Percent_Identity=39.5161290322581, Blast_Score=96, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17553450, Length=133, Percent_Identity=36.0902255639098, Blast_Score=91, Evalue=2e-19, Organism=Caenorhabditis elegans, GI115532676, Length=133, Percent_Identity=36.0902255639098, Blast_Score=91, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6319816, Length=120, Percent_Identity=40.8333333333333, Blast_Score=98, Evalue=4e-22, Organism=Drosophila melanogaster, GI221378664, Length=128, Percent_Identity=39.84375, Blast_Score=109, Evalue=6e-25, Organism=Drosophila melanogaster, GI221378662, Length=135, Percent_Identity=37.7777777777778, Blast_Score=107, Evalue=3e-24, Organism=Drosophila melanogaster, GI24645799, Length=119, Percent_Identity=42.8571428571429, Blast_Score=106, Evalue=5e-24, Organism=Drosophila melanogaster, GI45553335, Length=122, Percent_Identity=42.6229508196721, Blast_Score=106, Evalue=6e-24, Organism=Drosophila melanogaster, GI21356369, Length=122, Percent_Identity=42.6229508196721, Blast_Score=106, Evalue=6e-24, Organism=Drosophila melanogaster, GI24645801, Length=130, Percent_Identity=40.7692307692308, Blast_Score=102, Evalue=7e-23, Organism=Drosophila melanogaster, GI24645804, Length=133, Percent_Identity=40.6015037593985, Blast_Score=102, Evalue=8e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002579 - InterPro: IPR011057 [H]
Pfam domain/function: PF01641 SelR [H]
EC number: =1.8.4.12 [H]
Molecular weight: Translated: 16044; Mature: 15913
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 4.8 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVNGGIPASRDVPDPGPARTRRPLTETEKRIIEHQGTEPPFSGEFVSFFEPGIYSCRKC CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHC GAPLFRSEDKFDAGCGWPCFDDSLPDAVTSVHAGGGRRTEITCARCGGHLGHIFNGERLT CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEHHHCCCCCCCCCCCCCCC PKNLRYCVNSLSLEFRAAPLPIAADAPR HHHHHHHHHHHCCEEECCCCCCCCCCCC >Mature Secondary Structure AVNGGIPASRDVPDPGPARTRRPLTETEKRIIEHQGTEPPFSGEFVSFFEPGIYSCRKC CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHC GAPLFRSEDKFDAGCGWPCFDDSLPDAVTSVHAGGGRRTEITCARCGGHLGHIFNGERLT CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEHHHCCCCCCCCCCCCCCC PKNLRYCVNSLSLEFRAAPLPIAADAPR HHHHHHHHHHHCCEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA