Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735816
Identifier: 187735816
GI number: 187735816
Start: 1601701
End: 1603260
Strand: Direct
Name: 187735816
Synonym: Amuc_1323
Alternate gene names: NA
Gene position: 1601701-1603260 (Clockwise)
Preceding gene: 187735815
Following gene: 187735817
Centisome position: 60.12
GC content: 60.45
Gene sequence:
>1560_bases ATGCCCAGAATAAGGAGGATACGCAGGAAAAAGCCCCGTGCCGGCAGCGTCTGGAAAAAGCTGCTGCTGTGGGGCGTGCT GGGGATGCTTGTTCTGGCGGCGGCTGCGGTGGCGGGATCCTATCTGTACGTCAGGGCCTATTTGAAGAGCGATGGTTTTT TAGCCATGCTGGAACAGTCCGCCGTTGATGATATGAATGTGGAGACCGCCAGGATAGACCCTCTTGACTGGGACGGTTCC GGCATCCGGTGCGGCGGCGTAACGATGGAGGGGCATGAGTTTTTGACTTCCCTTCAGGCCAGGAACATTGAGACGAAATT CAGCCGCTGGGAGTTGCTGAAGCGCGCGTTTGTCATTACCTCCGTCAATATTGCGGAGCTGAAGCTTCAGCTCGCTCCCG TGCCTTTCCGTTTCCGGGAAAAACCGAAAGGGGCCAGGAGCTGGGCGGAAGAGAATATTCTGCCGGATACGTTCCGCTTG GAAAAGGGGAGCATTGATTCCCTGTTCGTTTCCTATGGGGAGGCCGGCCGGCCGTATGTTTTGGACGGAACCCGCGTGGA GAGCACCTATGACGCCGGTTCCAGCCAGTACAGGTTTGAAATGCAGGGGGGGAGGCTGCTCCTTCCTTTCAAGGGATGCC CGGAGTTTTCCCTGATGTCCGGCACGGCGCAGTTTAACCATGCCAGCAGGAGGGTGAACGTTCCGTCCTGCCGCCTGACT ACGGCTGCCGGCGGTTATCTGGACATCAAGGGGGACTGGGACGGCTCTTCCTCCTCTTGGACGGCGAATATGGTGGTGAA CGGCGTCCCCGCCTCTTCCGTCCTGGAAGGCCATTGGAAAAAGCATGTCCAGGGCAGCGTAAGCGGCGGGATAGACCTGC GCGGCGGACGGGACGGCGTAACCCATGTGGCCGGGCTCGCCAGGTTGCAGGGCGGCATGCTGACCGGCCTTCCCGTTCTG GACAGGCTGGCCCTGTTCTGCGGTTCTTCCAGATTCCGGAATCTTCCCCTGCACGAGGCGTCCGCCCAGTTCTCCTATCA GGAATCCGCCTGGCATATTTCCAATATTCTGGTGGAAAGCGAAAACCTGGTGAGGGTGGAAGGCTGGCTGGAAATCGGGA AAGGGGGGGCGCTGACCGGAAGGCTGCAGGTGGGGCTGCGGGCCGACGGCCTGTGGAAAGCTCTTCCGGGGTTTTCCGAT GTGTTTTCCGTTTCCCGCCAGGGAGCGGGAGGCAATCTGGCGTGGGCCAATGTGAATATCGGCGGGACGCTGGACAACCC GTCGGAGGACTTGTCCGCGCGGCTCATCAAGGCGGCGGGAAACCGCCTGACGGAAATAGGAATGGGCAAGGCGGCTGAGG TGGCGGATGTCGCGGCGCGGCTGCTGAACAGAGGGGCCGGGGAAAACGGGGCGGGGGATGGTGCGGAACGTAATGGCCGC AAGTTCAGGATTCCCGCCGCGGACGAAGTACCCGTCCCGGTTGTGCCGCGGCTTCAGGACGCTGCGGAAAAGGGGCTTAA AACCGGGAATGACCTGATGAACGAACTAATGAATTGGTAA
Upstream 100 bases:
>100_bases GGAAGGCCTGCTGCGCGGATGCCCGTTCCCCGCAGTTTGCGGCAGGCCGGGAGGCAATCCGGAGGCTTGACCGAAGCCGG ATTTGATATAGGCTGGCGTC
Downstream 100 bases:
>100_bases CCCGTTTTTTTCAGATGAAACCTTATCCCTGCCAGATGGTGCAGGCGGTCGCCGTTATTGTGGAGCGTATCGCGGATACG GCTTTCCGCGCCACCCTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 519; Mature: 518
Protein sequence:
>519_residues MPRIRRIRRKKPRAGSVWKKLLLWGVLGMLVLAAAAVAGSYLYVRAYLKSDGFLAMLEQSAVDDMNVETARIDPLDWDGS GIRCGGVTMEGHEFLTSLQARNIETKFSRWELLKRAFVITSVNIAELKLQLAPVPFRFREKPKGARSWAEENILPDTFRL EKGSIDSLFVSYGEAGRPYVLDGTRVESTYDAGSSQYRFEMQGGRLLLPFKGCPEFSLMSGTAQFNHASRRVNVPSCRLT TAAGGYLDIKGDWDGSSSSWTANMVVNGVPASSVLEGHWKKHVQGSVSGGIDLRGGRDGVTHVAGLARLQGGMLTGLPVL DRLALFCGSSRFRNLPLHEASAQFSYQESAWHISNILVESENLVRVEGWLEIGKGGALTGRLQVGLRADGLWKALPGFSD VFSVSRQGAGGNLAWANVNIGGTLDNPSEDLSARLIKAAGNRLTEIGMGKAAEVADVAARLLNRGAGENGAGDGAERNGR KFRIPAADEVPVPVVPRLQDAAEKGLKTGNDLMNELMNW
Sequences:
>Translated_519_residues MPRIRRIRRKKPRAGSVWKKLLLWGVLGMLVLAAAAVAGSYLYVRAYLKSDGFLAMLEQSAVDDMNVETARIDPLDWDGS GIRCGGVTMEGHEFLTSLQARNIETKFSRWELLKRAFVITSVNIAELKLQLAPVPFRFREKPKGARSWAEENILPDTFRL EKGSIDSLFVSYGEAGRPYVLDGTRVESTYDAGSSQYRFEMQGGRLLLPFKGCPEFSLMSGTAQFNHASRRVNVPSCRLT TAAGGYLDIKGDWDGSSSSWTANMVVNGVPASSVLEGHWKKHVQGSVSGGIDLRGGRDGVTHVAGLARLQGGMLTGLPVL DRLALFCGSSRFRNLPLHEASAQFSYQESAWHISNILVESENLVRVEGWLEIGKGGALTGRLQVGLRADGLWKALPGFSD VFSVSRQGAGGNLAWANVNIGGTLDNPSEDLSARLIKAAGNRLTEIGMGKAAEVADVAARLLNRGAGENGAGDGAERNGR KFRIPAADEVPVPVVPRLQDAAEKGLKTGNDLMNELMNW >Mature_518_residues PRIRRIRRKKPRAGSVWKKLLLWGVLGMLVLAAAAVAGSYLYVRAYLKSDGFLAMLEQSAVDDMNVETARIDPLDWDGSG IRCGGVTMEGHEFLTSLQARNIETKFSRWELLKRAFVITSVNIAELKLQLAPVPFRFREKPKGARSWAEENILPDTFRLE KGSIDSLFVSYGEAGRPYVLDGTRVESTYDAGSSQYRFEMQGGRLLLPFKGCPEFSLMSGTAQFNHASRRVNVPSCRLTT AAGGYLDIKGDWDGSSSSWTANMVVNGVPASSVLEGHWKKHVQGSVSGGIDLRGGRDGVTHVAGLARLQGGMLTGLPVLD RLALFCGSSRFRNLPLHEASAQFSYQESAWHISNILVESENLVRVEGWLEIGKGGALTGRLQVGLRADGLWKALPGFSDV FSVSRQGAGGNLAWANVNIGGTLDNPSEDLSARLIKAAGNRLTEIGMGKAAEVADVAARLLNRGAGENGAGDGAERNGRK FRIPAADEVPVPVVPRLQDAAEKGLKTGNDLMNELMNW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56285; Mature: 56154
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRIRRIRRKKPRAGSVWKKLLLWGVLGMLVLAAAAVAGSYLYVRAYLKSDGFLAMLEQS CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEHHHH AVDDMNVETARIDPLDWDGSGIRCGGVTMEGHEFLTSLQARNIETKFSRWELLKRAFVIT CCCCCCCCEEECCCCCCCCCCEEECCEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHE SVNIAELKLQLAPVPFRFREKPKGARSWAEENILPDTFRLEKGSIDSLFVSYGEAGRPYV ECCHHHEEEEECCCCCHHCCCCCHHHHHHHCCCCCCCEEECCCCHHHHHEECCCCCCCEE LDGTRVESTYDAGSSQYRFEMQGGRLLLPFKGCPEFSLMSGTAQFNHASRRVNVPSCRLT ECCCEECCCCCCCCCEEEEEECCCEEEEECCCCCCCCEECCCHHHCCCCCCCCCCCEEEE TAAGGYLDIKGDWDGSSSSWTANMVVNGVPASSVLEGHWKKHVQGSVSGGIDLRGGRDGV ECCCCEEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHH THVAGLARLQGGMLTGLPVLDRLALFCGSSRFRNLPLHEASAQFSYQESAWHISNILVES HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHEEECC ENLVRVEGWLEIGKGGALTGRLQVGLRADGLWKALPGFSDVFSVSRQGAGGNLAWANVNI CCEEEEEEEEEECCCCCEEEEEEEEECCCCHHHHCCCHHHHHHHHCCCCCCCEEEEEEEE GGTLDNPSEDLSARLIKAAGNRLTEIGMGKAAEVADVAARLLNRGAGENGAGDGAERNGR CCCCCCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC KFRIPAADEVPVPVVPRLQDAAEKGLKTGNDLMNELMNW EEECCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCC >Mature Secondary Structure PRIRRIRRKKPRAGSVWKKLLLWGVLGMLVLAAAAVAGSYLYVRAYLKSDGFLAMLEQS CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEHHHH AVDDMNVETARIDPLDWDGSGIRCGGVTMEGHEFLTSLQARNIETKFSRWELLKRAFVIT CCCCCCCCEEECCCCCCCCCCEEECCEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHE SVNIAELKLQLAPVPFRFREKPKGARSWAEENILPDTFRLEKGSIDSLFVSYGEAGRPYV ECCHHHEEEEECCCCCHHCCCCCHHHHHHHCCCCCCCEEECCCCHHHHHEECCCCCCCEE LDGTRVESTYDAGSSQYRFEMQGGRLLLPFKGCPEFSLMSGTAQFNHASRRVNVPSCRLT ECCCEECCCCCCCCCEEEEEECCCEEEEECCCCCCCCEECCCHHHCCCCCCCCCCCEEEE TAAGGYLDIKGDWDGSSSSWTANMVVNGVPASSVLEGHWKKHVQGSVSGGIDLRGGRDGV ECCCCEEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHH THVAGLARLQGGMLTGLPVLDRLALFCGSSRFRNLPLHEASAQFSYQESAWHISNILVES HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHEEECC ENLVRVEGWLEIGKGGALTGRLQVGLRADGLWKALPGFSDVFSVSRQGAGGNLAWANVNI CCEEEEEEEEEECCCCCEEEEEEEEECCCCHHHHCCCHHHHHHHHCCCCCCCEEEEEEEE GGTLDNPSEDLSARLIKAAGNRLTEIGMGKAAEVADVAARLLNRGAGENGAGDGAERNGR CCCCCCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC KFRIPAADEVPVPVVPRLQDAAEKGLKTGNDLMNELMNW EEECCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA