Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735809
Identifier: 187735809
GI number: 187735809
Start: 1594983
End: 1595444
Strand: Reverse
Name: 187735809
Synonym: Amuc_1316
Alternate gene names: NA
Gene position: 1595444-1594983 (Counterclockwise)
Preceding gene: 187735810
Following gene: 187735808
Centisome position: 59.89
GC content: 50.22
Gene sequence:
>462_bases ATGAGCAAAGAGAGCGTCAATATCCACGTAAACAACTACTGCCGGCTGCGGGACAAACAATATGCCGTCTATACGGAATA CGCCAGAAAACACGGGTTAACCACCAAAGAGCTGTTTATTCTGGATATCATCTATTTCGCTCAGGACGGCTGCACGCAGG CCGGGATTTGCGAACGCCTCTCCGCCACGAAGCAAACCGTCAGCGCCGCCATCAAAAAATTCTGGAAGCTGGGGTACCTT TCTTTTGAAGAATCCAAAACCGACCGGAGAATCAGGTTGATACGCTTCACCGCAGCCGGAAAGGAATACGTGGAACGCAT CATCCCCCCTGCCGCGCAGGCGGAAAACGACGCCATGGCGGAATTGAGTGGAGAACAGCAAGCGGAACTGATTCGTTTAA CCGACCTTTTTTCGGAACAAATGCGTCTGAAATTTCAATCCATCAACAAAAACACGCTATGA
Upstream 100 bases:
>100_bases GGGGCTTTATATTTGGGGCTTTACAAAAAACGCGTAAAGAGCTACATTCTTTTTGTCAAATATCAGACCATCAAATATCA TACTTTATTCATCTCCGCCT
Downstream 100 bases:
>100_bases TTATCAATACAGGAGGACGGACGGACACCGTCCAGTATTACACCCGCTGGCTGCTGAAGAGATTTGAAGAAGGCTATGTC CTTTCCCGCAATCCCCTGTT
Product: MarR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator MarR Family; MarR Family Regulatory Protein; Transcriptional Regulator; MarR Family Transcriptional Regulator
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MSKESVNIHVNNYCRLRDKQYAVYTEYARKHGLTTKELFILDIIYFAQDGCTQAGICERLSATKQTVSAAIKKFWKLGYL SFEESKTDRRIRLIRFTAAGKEYVERIIPPAAQAENDAMAELSGEQQAELIRLTDLFSEQMRLKFQSINKNTL
Sequences:
>Translated_153_residues MSKESVNIHVNNYCRLRDKQYAVYTEYARKHGLTTKELFILDIIYFAQDGCTQAGICERLSATKQTVSAAIKKFWKLGYL SFEESKTDRRIRLIRFTAAGKEYVERIIPPAAQAENDAMAELSGEQQAELIRLTDLFSEQMRLKFQSINKNTL >Mature_152_residues SKESVNIHVNNYCRLRDKQYAVYTEYARKHGLTTKELFILDIIYFAQDGCTQAGICERLSATKQTVSAAIKKFWKLGYLS FEESKTDRRIRLIRFTAAGKEYVERIIPPAAQAENDAMAELSGEQQAELIRLTDLFSEQMRLKFQSINKNTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17652; Mature: 17521
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: PS50995 HTH_MARR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKESVNIHVNNYCRLRDKQYAVYTEYARKHGLTTKELFILDIIYFAQDGCTQAGICERL CCCCEEEEEECCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH SATKQTVSAAIKKFWKLGYLSFEESKTDRRIRLIRFTAAGKEYVERIIPPAAQAENDAMA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHHHCCCCCCCCCCHHH ELSGEQQAELIRLTDLFSEQMRLKFQSINKNTL HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SKESVNIHVNNYCRLRDKQYAVYTEYARKHGLTTKELFILDIIYFAQDGCTQAGICERL CCCEEEEEECCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH SATKQTVSAAIKKFWKLGYLSFEESKTDRRIRLIRFTAAGKEYVERIIPPAAQAENDAMA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHHHCCCCCCCCCCHHH ELSGEQQAELIRLTDLFSEQMRLKFQSINKNTL HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA