Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is purN [H]
Identifier: 187735775
GI number: 187735775
Start: 1543459
End: 1544046
Strand: Direct
Name: purN [H]
Synonym: Amuc_1281
Alternate gene names: 187735775
Gene position: 1543459-1544046 (Clockwise)
Preceding gene: 187735765
Following gene: 187735776
Centisome position: 57.94
GC content: 59.35
Gene sequence:
>588_bases ATGTCCAGATTGCCCAAGTTAGGAATACTCGGTTCCGGTTCCGGTTCCAATTGCCAGTCCATTTATGATGCCATCCAGTC CGGTTCTCTCCGGGCGGAAATCGCCGTGGTGATGTCTGACAATCCGGACGCCTATATTCTGGAACGCGCCCGTTCCTGGG GCATTCCGGCGGAGGTTATTGACTGCGGGGGATTTAAAACCAGATTTCCGGAGGAATCCCAGGCATCCGTTGCCGCGCGC CTGAAGCAATACGGCGTGGACTGCGTGTGCCTGGCGGGATTCATGCGCTTGGTGAAACTTCCGCTGCTGAAGGAATTTCC TTCCCGCATCCTGAATATCCACCCTTCCCTTCTTCCAGCCTTCCCGGGGCTTCATGCCTGGGAGCAGGCTGTGAACGCCG GAGCTGCGGAGAGCGGCTGCACCGTCCATTATGTGGATGACGGAATGGATACCGGCCCCATCCTGGGCCAGGCTCGCGTG CCCGTGCTGCCGGGGGATACGCCGGAAAGCCTTCACGCCCGCATTCAGGAGCAGGAGCATACCCTTTATCCCGCCATGAT CGCCCGCGTTCTGGAAACGCTGGCATGA
Upstream 100 bases:
>100_bases GAAAACGGGGGTCTCTCATGCCTTTATTAGGCAAATACGGCAGCCTTTTTGTCAAGCCGGAGACTTGCCACGGGCAAAAA ACTGTGGTTTTATCCCCCGG
Downstream 100 bases:
>100_bases CCTGATTCTCCTTCTGACCGGAAAGCAATCCGGCCTCCTGCCGGGAGAGGATGACAGGATGACCGATTCTCTTGTCTTGT GATATGAACGGAATCCGTTA
Product: phosphoribosylglycinamide formyltransferase
Products: NA
Alternate protein names: 5'-phosphoribosylglycinamide transformylase; GAR transformylase; GART [H]
Number of amino acids: Translated: 195; Mature: 194
Protein sequence:
>195_residues MSRLPKLGILGSGSGSNCQSIYDAIQSGSLRAEIAVVMSDNPDAYILERARSWGIPAEVIDCGGFKTRFPEESQASVAAR LKQYGVDCVCLAGFMRLVKLPLLKEFPSRILNIHPSLLPAFPGLHAWEQAVNAGAAESGCTVHYVDDGMDTGPILGQARV PVLPGDTPESLHARIQEQEHTLYPAMIARVLETLA
Sequences:
>Translated_195_residues MSRLPKLGILGSGSGSNCQSIYDAIQSGSLRAEIAVVMSDNPDAYILERARSWGIPAEVIDCGGFKTRFPEESQASVAAR LKQYGVDCVCLAGFMRLVKLPLLKEFPSRILNIHPSLLPAFPGLHAWEQAVNAGAAESGCTVHYVDDGMDTGPILGQARV PVLPGDTPESLHARIQEQEHTLYPAMIARVLETLA >Mature_194_residues SRLPKLGILGSGSGSNCQSIYDAIQSGSLRAEIAVVMSDNPDAYILERARSWGIPAEVIDCGGFKTRFPEESQASVAARL KQYGVDCVCLAGFMRLVKLPLLKEFPSRILNIHPSLLPAFPGLHAWEQAVNAGAAESGCTVHYVDDGMDTGPILGQARVP VLPGDTPESLHARIQEQEHTLYPAMIARVLETLA
Specific function: De novo purine biosynthesis; third step. [C]
COG id: COG0299
COG function: function code F; Folate-dependent phosphoribosylglycinamide formyltransferase PurN
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GART family [H]
Homologues:
Organism=Homo sapiens, GI4503915, Length=185, Percent_Identity=38.9189189189189, Blast_Score=144, Evalue=4e-35, Organism=Homo sapiens, GI209869995, Length=185, Percent_Identity=38.9189189189189, Blast_Score=144, Evalue=4e-35, Organism=Homo sapiens, GI209869993, Length=185, Percent_Identity=38.9189189189189, Blast_Score=144, Evalue=4e-35, Organism=Escherichia coli, GI1788846, Length=180, Percent_Identity=41.6666666666667, Blast_Score=157, Evalue=4e-40, Organism=Escherichia coli, GI1787483, Length=166, Percent_Identity=34.3373493975904, Blast_Score=82, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17567511, Length=191, Percent_Identity=39.7905759162304, Blast_Score=135, Evalue=2e-32, Organism=Saccharomyces cerevisiae, GI6320616, Length=212, Percent_Identity=30.6603773584906, Blast_Score=79, Evalue=3e-16, Organism=Drosophila melanogaster, GI24582400, Length=195, Percent_Identity=43.5897435897436, Blast_Score=165, Evalue=2e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002376 - InterPro: IPR001555 - InterPro: IPR004607 [H]
Pfam domain/function: PF00551 Formyl_trans_N [H]
EC number: =2.1.2.2 [H]
Molecular weight: Translated: 20983; Mature: 20852
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: PS00373 GART
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLPKLGILGSGSGSNCQSIYDAIQSGSLRAEIAVVMSDNPDAYILERARSWGIPAEVI CCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHE DCGGFKTRFPEESQASVAARLKQYGVDCVCLAGFMRLVKLPLLKEFPSRILNIHPSLLPA ECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC FPGLHAWEQAVNAGAAESGCTVHYVDDGMDTGPILGQARVPVLPGDTPESLHARIQEQEH CCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH TLYPAMIARVLETLA HHHHHHHHHHHHHHC >Mature Secondary Structure SRLPKLGILGSGSGSNCQSIYDAIQSGSLRAEIAVVMSDNPDAYILERARSWGIPAEVI CCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHE DCGGFKTRFPEESQASVAARLKQYGVDCVCLAGFMRLVKLPLLKEFPSRILNIHPSLLPA ECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC FPGLHAWEQAVNAGAAESGCTVHYVDDGMDTGPILGQARVPVLPGDTPESLHARIQEQEH CCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH TLYPAMIARVLETLA HHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3301838; 9205837; 9278503; 10954745; 2204419; 1522592; 1631098; 9698564; 10606510 [H]