Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is trxB/A [H]
Identifier: 187735763
GI number: 187735763
Start: 1530208
End: 1531137
Strand: Reverse
Name: trxB/A [H]
Synonym: Amuc_1269
Alternate gene names: 187735763
Gene position: 1531137-1530208 (Counterclockwise)
Preceding gene: 187735764
Following gene: 187735762
Centisome position: 57.47
GC content: 59.14
Gene sequence:
>930_bases ATGAGCGAACAAGTCATTATCATCGGTGCCGGCTGCGCTGGTTACACGGCGGCCATTTACACCGCCCGCGCCAATCTCTC TCCGCTTCTGATCACGGGTTCCCAAATCGGCGGACAACTGACCACCACGACGGAAGTGGAAAACTTCCCCGGCTTTCCGG ACGGCGTGATGGGGCCGGACCTGATGTTCCTGATGCAGCAGCAGGCGGAAAAGTTCGGCACCCGGTTTGCATATGAGGAC GTCAAGAGCGTCGTCAGGGATGAAGCCACCGGGCTGTTCACCGTGAAGACCAGCGGCCAGAATTACGAAACCCGGAGTAT CATTGTGGCTACGGGAGCATCCGCCCGCTATCTGGGAATACCGGGAGAGGAAGGGCTGGTTGGCCACGGACTCACCGCCT GCGCCACCTGTGACGGAGCTTTTTACCGGGACGTGCCTGTGTGCGTGGTAGGCGGAGGAGACAGCGCCTGTGAAGAAGCC ATGTTCCTGACGCGCTTCGCTTCCCGGGTGTACCTGATCCACCGCCGCGACACGCTCCGCGCTTCCAAAATCATGGCGGA ACGAACGCTGTCCAATGAAAAGATTTTCCCCATGTGGAATTCCACCATCGTAAGCTATAAGACGGACGACAAGGGAGAAC TGGAAGCCGTCATGCTGAAGGACGTAGTAGAAGGGGATGAAACGGAACTTCCCGTCAAATGCGTCTTTATGGCGATCGGG CACACGCCGAACACTTCTTTCCTGGGGGATCTGGTGGACCGGGACGATGCCGGCTACATTATCCGGGAAACAGGGATGAT GGCGACCAGGACGCCGGGATTGTTCGCCGCCGGAGATGTGGCGGATCCTCACTACCGCCAGGCCATTTCTTCCGCCGGAA TGGGCTGCAGCGCCGCGATTGAAGCGGAACGCTACCTGCTGGGGCTGTAA
Upstream 100 bases:
>100_bases CCGCCGGATTGCAGGCCGCTGCATTGTCTCCGCATAGCGCAAAATCTACTCGCAAAACGGGCACGGGCCCTTTACCATGG CAACGGACATATATACTATT
Downstream 100 bases:
>100_bases ACCCATCTTTCGGAACGGGCCGGAATTCCCAGCGGGATTTCCGGCCCTTCCCCGCTACAGGAAAACGGACATGCACCATT ACAGCATTTTTGAGCTTTTC
Product: thioredoxin reductase
Products: NA
Alternate protein names: Thioredoxin reductase; TRXR; Thioredoxin [H]
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MSEQVIIIGAGCAGYTAAIYTARANLSPLLITGSQIGGQLTTTTEVENFPGFPDGVMGPDLMFLMQQQAEKFGTRFAYED VKSVVRDEATGLFTVKTSGQNYETRSIIVATGASARYLGIPGEEGLVGHGLTACATCDGAFYRDVPVCVVGGGDSACEEA MFLTRFASRVYLIHRRDTLRASKIMAERTLSNEKIFPMWNSTIVSYKTDDKGELEAVMLKDVVEGDETELPVKCVFMAIG HTPNTSFLGDLVDRDDAGYIIRETGMMATRTPGLFAAGDVADPHYRQAISSAGMGCSAAIEAERYLLGL
Sequences:
>Translated_309_residues MSEQVIIIGAGCAGYTAAIYTARANLSPLLITGSQIGGQLTTTTEVENFPGFPDGVMGPDLMFLMQQQAEKFGTRFAYED VKSVVRDEATGLFTVKTSGQNYETRSIIVATGASARYLGIPGEEGLVGHGLTACATCDGAFYRDVPVCVVGGGDSACEEA MFLTRFASRVYLIHRRDTLRASKIMAERTLSNEKIFPMWNSTIVSYKTDDKGELEAVMLKDVVEGDETELPVKCVFMAIG HTPNTSFLGDLVDRDDAGYIIRETGMMATRTPGLFAAGDVADPHYRQAISSAGMGCSAAIEAERYLLGL >Mature_308_residues SEQVIIIGAGCAGYTAAIYTARANLSPLLITGSQIGGQLTTTTEVENFPGFPDGVMGPDLMFLMQQQAEKFGTRFAYEDV KSVVRDEATGLFTVKTSGQNYETRSIIVATGASARYLGIPGEEGLVGHGLTACATCDGAFYRDVPVCVVGGGDSACEEAM FLTRFASRVYLIHRRDTLRASKIMAERTLSNEKIFPMWNSTIVSYKTDDKGELEAVMLKDVVEGDETELPVKCVFMAIGH TPNTSFLGDLVDRDDAGYIIRETGMMATRTPGLFAAGDVADPHYRQAISSAGMGCSAAIEAERYLLGL
Specific function: Unknown
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1787114, Length=314, Percent_Identity=49.0445859872611, Blast_Score=278, Evalue=4e-76, Organism=Escherichia coli, GI87081763, Length=306, Percent_Identity=31.6993464052288, Blast_Score=127, Evalue=1e-30, Organism=Saccharomyces cerevisiae, GI6320560, Length=320, Percent_Identity=49.0625, Blast_Score=291, Evalue=1e-79, Organism=Saccharomyces cerevisiae, GI6321898, Length=317, Percent_Identity=45.7413249211356, Blast_Score=266, Evalue=4e-72,
Paralogues:
None
Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR008255 - InterPro: IPR001327 - InterPro: IPR000103 - InterPro: IPR005982 - InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF00085 Thioredoxin [H]
EC number: =1.8.1.9 [H]
Molecular weight: Translated: 33214; Mature: 33083
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: PS00573 PYRIDINE_REDOX_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEQVIIIGAGCAGYTAAIYTARANLSPLLITGSQIGGQLTTTTEVENFPGFPDGVMGPD CCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCHH LMFLMQQQAEKFGTRFAYEDVKSVVRDEATGLFTVKTSGQNYETRSIIVATGASARYLGI HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEEECCCEEEEEC PGEEGLVGHGLTACATCDGAFYRDVPVCVVGGGDSACEEAMFLTRFASRVYLIHRRDTLR CCCCCCCCCCCCEEEECCCCEECCCCEEEECCCCHHHHHHHHHHHHHHHEEEEECCCHHH ASKIMAERTLSNEKIFPMWNSTIVSYKTDDKGELEAVMLKDVVEGDETELPVKCVFMAIG HHHHHHHHHCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEC HTPNTSFLGDLVDRDDAGYIIRETGMMATRTPGLFAAGDVADPHYRQAISSAGMGCSAAI CCCCHHHHHHHHCCCCCCEEEEECCCEEECCCCCEEECCCCCHHHHHHHHHCCCCCHHHH EAERYLLGL HHHHHEECC >Mature Secondary Structure SEQVIIIGAGCAGYTAAIYTARANLSPLLITGSQIGGQLTTTTEVENFPGFPDGVMGPD CCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCHH LMFLMQQQAEKFGTRFAYEDVKSVVRDEATGLFTVKTSGQNYETRSIIVATGASARYLGI HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEEECCCEEEEEC PGEEGLVGHGLTACATCDGAFYRDVPVCVVGGGDSACEEAMFLTRFASRVYLIHRRDTLR CCCCCCCCCCCCEEEECCCCEECCCCEEEECCCCHHHHHHHHHHHHHHHEEEEECCCHHH ASKIMAERTLSNEKIFPMWNSTIVSYKTDDKGELEAVMLKDVVEGDETELPVKCVFMAIG HHHHHHHHHCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEC HTPNTSFLGDLVDRDDAGYIIRETGMMATRTPGLFAAGDVADPHYRQAISSAGMGCSAAI CCCCHHHHHHHHCCCCCCEEEEECCCEEECCCCCEEECCCCCHHHHHHHHHCCCCCHHHH EAERYLLGL HHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969512; 7476189; 11234002 [H]