Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735734
Identifier: 187735734
GI number: 187735734
Start: 1487749
End: 1490136
Strand: Direct
Name: 187735734
Synonym: Amuc_1240
Alternate gene names: NA
Gene position: 1487749-1490136 (Clockwise)
Preceding gene: 187735733
Following gene: 187735735
Centisome position: 55.84
GC content: 54.94
Gene sequence:
>2388_bases ATGTTTTCCGCCGCCCAGGAAAATATTCCGGATGCCGCTCCCATCGCGGATGGTCCGCTGGTCGCTAATCCGGAGCAGGA TACGCTGGATATGGCGGACATGCTGTACAAGCAGGCCCAGGCTCCGGCTACGAAGGAGAACCGGCAGGAATATGGACGCC TTCTTGATTTAAGCTTGCGTAAATATCTGGAATTTACCCAACGTTTTCCCCAGTCCGCCCAGGCTCCTCTGGCGGAGTAT CGTGCTGCCATGTGTTTGGAGGAGCTGGGCAGGAAAGATGAGGCACATGGCCTGTTCCTCAGATTGATTCAGACGGGCAG CCCCGCCCTGGTTGCCGCCTCCGCCTACCGTCTGGCGACGGATGCTTCTTCTGCCGGGGAGATAGATAAGGCCATCCAGT ATTACCAGCTCGTGATTCGCAATGCGGAACAGAATGATTTGAAGGTGGACGCCCAGTACCGTCTGGGACGCCTGTTTCTT TCCAGCGGTAATCCGGAGGCAGCCGCCACCATGTTTTGTGCGGTGATGGGCAATCCGGAAGCGGATGCCAAGTTTGTTCT GGTGTCCCGGATGGGATATGCCGCCCTGTGTGCGGATACGGGACGCTTGGGAGAAGCTTATTCCGAATATCGCAAGGTGC TGGAAACGCCCGGTGTGGATAACAGGAACAGGGGAATCGCCACTCTTCAGGCCGCCATGCTGGCCACCAAACTGAAAAAG ACTGCGGAAGCCCAGGGCCTTTATGAACGGCTTTTGAAGGACGAGTCCCTGAAGGAGATGGCGCCGGAGGCCCGAATGGG GCTTCTTCTGGGGCTGTACAATATGGGCAAGTACAGGGAGATACTTTCCCAGTATGAGCAGCAGAAGGGAATAAAGATGC CGACAAAGGACGGCCAGGTGCGTCTGTTGATGCTGCTGGGGCAGTCCGCCTATAAATTGAAGGAGTACCGGAAAGCGGCA GATTTCTTTCTGGAAGCGGAAAAGTCCGTTCCTTATACGCAGGAGGCCATGCAAGCCTCCTTTTACCGGTTATTGTGTTA TAATGAACTTAAGCAGAAAGATCTCCCCCAGCGGGCCCAGAGCTTCCTGAACCATTATGCCAAGGCTTTTCCTACCAGTG AGCTGCATGATATGGTGCGCCTGATGGCTGCAGAGAACCTGTTCAGCTCCAATCCGGCGGATGCCGCCCGGTTTTATGCC AGCATTGATTTTGACAAAGTGCCCCCGAAGATGCGTGCGGATATTTTATATAAGAGCGCATGGGCGATTGCCCAGGCCGG GAACAGAGGTGTGGCCGCCAAGCTGCTGACTGATTTTATCAATGATTTTCCGAAAGATCCCCGCATTTGCGAGGCATTGA CGTTGCGTGGGGACATGTATGCCAAGACCAAGAAGGAAGCTGAGGCGCTGATGGATTTTGACCGTGTGATTGCCCGCTGG CCGAAAGCTGAATCAGCTGCCGCCGCATGGCAGAGAGCCGCTCAGATTTATGCGGGACGCCAGGATATGGCGAACATGGC GAAGTATTATGAAGGCCTGATTCAGAATTTTCCGAAGGCGTCTCCTGCCGCTTTGGCTGAAGCCCATTTCCTGCTGGGGC GTGCGGCGTTTGACCAGGGAGATTTCAAGTCTTCTATCAGCCATATGGCTGAGGCCAAGACTCTGGATCCCCAGAAATAC GGAGAACAGGTTAATGTGCTTTCCGTTCTGTCCTATCACAAGCTCCAGGACGTGAATAAACTGAAGGAGGCCCTGGAAAC CCTGCAAAAGGAAAATCCTTCCGCCGTGGCTCGTGTGCCGGATGTCATCCCCGCATGGCTGGGCCTTCAGGCCTATGGGA TGAAGGATCTGGAAACGGCGGACAAGTATATGACCTGGGCTACGCAGAACGACCAGCTTCAGAATGTGAAGAAGGTGATT TGGCGTAATTTGGCGAAGGTGCGCCTGGCGCTCAGAAAGTATGACCGCGCCTTGGTGGCTTCCAACAATTTTCTGAAGGA TGAGGACCAGCCTTACCGCCGTGCGGACGGCATGCTGGACAAGGCTTCCATTTTGCTGGGGCTGGGCAAGTATGCGGATG CCAGGAAGACGGCGGAAGATGCGCTGGCTCTGGGCGTGGAAGGTCCTCTGATGGCTTCCTTGAAAATTGTTCTGGGGGAT ATTTCCTATGCGGAGAAAAAGTTTGATGAAGCGGCCAAGCATTACGGTGTTACGGCCGAGCTGTTTGTCAATGACGCCGA ACTGAAACCCAAGGCTCTCTTCAAGGCGGCGGAAGCTTTGGACAAGGCCGGGCGCAAATCGGAGGCTTCCCAATACCGGG CCCGCCTGCAAAAGGAATTCCCGGATTGGAAACAGGATGGAGAGTCTTTGCCTCCGGACGCACGATAA
Upstream 100 bases:
>100_bases TTTCCACGCGTCCTCCGGTTCCATCTTCAATCAATGTTTCCAATTCCCAGGCTTCATGAAAGCGTTTTTTTCCATTAATG CAGGTTTAATAACTTTGGCG
Downstream 100 bases:
>100_bases GCGTTTTAAAGATTGAAACCGGAAATGGAGAACAGGCGTAAAAGATGGTATGATCTGTTTGGATTGCTGCCTCGCAATCT GGGCCGTCTGTTGCTGTGGT
Product: Tetratricopeptide TPR_2 repeat protein
Products: NA
Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein
Number of amino acids: Translated: 795; Mature: 795
Protein sequence:
>795_residues MFSAAQENIPDAAPIADGPLVANPEQDTLDMADMLYKQAQAPATKENRQEYGRLLDLSLRKYLEFTQRFPQSAQAPLAEY RAAMCLEELGRKDEAHGLFLRLIQTGSPALVAASAYRLATDASSAGEIDKAIQYYQLVIRNAEQNDLKVDAQYRLGRLFL SSGNPEAAATMFCAVMGNPEADAKFVLVSRMGYAALCADTGRLGEAYSEYRKVLETPGVDNRNRGIATLQAAMLATKLKK TAEAQGLYERLLKDESLKEMAPEARMGLLLGLYNMGKYREILSQYEQQKGIKMPTKDGQVRLLMLLGQSAYKLKEYRKAA DFFLEAEKSVPYTQEAMQASFYRLLCYNELKQKDLPQRAQSFLNHYAKAFPTSELHDMVRLMAAENLFSSNPADAARFYA SIDFDKVPPKMRADILYKSAWAIAQAGNRGVAAKLLTDFINDFPKDPRICEALTLRGDMYAKTKKEAEALMDFDRVIARW PKAESAAAAWQRAAQIYAGRQDMANMAKYYEGLIQNFPKASPAALAEAHFLLGRAAFDQGDFKSSISHMAEAKTLDPQKY GEQVNVLSVLSYHKLQDVNKLKEALETLQKENPSAVARVPDVIPAWLGLQAYGMKDLETADKYMTWATQNDQLQNVKKVI WRNLAKVRLALRKYDRALVASNNFLKDEDQPYRRADGMLDKASILLGLGKYADARKTAEDALALGVEGPLMASLKIVLGD ISYAEKKFDEAAKHYGVTAELFVNDAELKPKALFKAAEALDKAGRKSEASQYRARLQKEFPDWKQDGESLPPDAR
Sequences:
>Translated_795_residues MFSAAQENIPDAAPIADGPLVANPEQDTLDMADMLYKQAQAPATKENRQEYGRLLDLSLRKYLEFTQRFPQSAQAPLAEY RAAMCLEELGRKDEAHGLFLRLIQTGSPALVAASAYRLATDASSAGEIDKAIQYYQLVIRNAEQNDLKVDAQYRLGRLFL SSGNPEAAATMFCAVMGNPEADAKFVLVSRMGYAALCADTGRLGEAYSEYRKVLETPGVDNRNRGIATLQAAMLATKLKK TAEAQGLYERLLKDESLKEMAPEARMGLLLGLYNMGKYREILSQYEQQKGIKMPTKDGQVRLLMLLGQSAYKLKEYRKAA DFFLEAEKSVPYTQEAMQASFYRLLCYNELKQKDLPQRAQSFLNHYAKAFPTSELHDMVRLMAAENLFSSNPADAARFYA SIDFDKVPPKMRADILYKSAWAIAQAGNRGVAAKLLTDFINDFPKDPRICEALTLRGDMYAKTKKEAEALMDFDRVIARW PKAESAAAAWQRAAQIYAGRQDMANMAKYYEGLIQNFPKASPAALAEAHFLLGRAAFDQGDFKSSISHMAEAKTLDPQKY GEQVNVLSVLSYHKLQDVNKLKEALETLQKENPSAVARVPDVIPAWLGLQAYGMKDLETADKYMTWATQNDQLQNVKKVI WRNLAKVRLALRKYDRALVASNNFLKDEDQPYRRADGMLDKASILLGLGKYADARKTAEDALALGVEGPLMASLKIVLGD ISYAEKKFDEAAKHYGVTAELFVNDAELKPKALFKAAEALDKAGRKSEASQYRARLQKEFPDWKQDGESLPPDAR >Mature_795_residues MFSAAQENIPDAAPIADGPLVANPEQDTLDMADMLYKQAQAPATKENRQEYGRLLDLSLRKYLEFTQRFPQSAQAPLAEY RAAMCLEELGRKDEAHGLFLRLIQTGSPALVAASAYRLATDASSAGEIDKAIQYYQLVIRNAEQNDLKVDAQYRLGRLFL SSGNPEAAATMFCAVMGNPEADAKFVLVSRMGYAALCADTGRLGEAYSEYRKVLETPGVDNRNRGIATLQAAMLATKLKK TAEAQGLYERLLKDESLKEMAPEARMGLLLGLYNMGKYREILSQYEQQKGIKMPTKDGQVRLLMLLGQSAYKLKEYRKAA DFFLEAEKSVPYTQEAMQASFYRLLCYNELKQKDLPQRAQSFLNHYAKAFPTSELHDMVRLMAAENLFSSNPADAARFYA SIDFDKVPPKMRADILYKSAWAIAQAGNRGVAAKLLTDFINDFPKDPRICEALTLRGDMYAKTKKEAEALMDFDRVIARW PKAESAAAAWQRAAQIYAGRQDMANMAKYYEGLIQNFPKASPAALAEAHFLLGRAAFDQGDFKSSISHMAEAKTLDPQKY GEQVNVLSVLSYHKLQDVNKLKEALETLQKENPSAVARVPDVIPAWLGLQAYGMKDLETADKYMTWATQNDQLQNVKKVI WRNLAKVRLALRKYDRALVASNNFLKDEDQPYRRADGMLDKASILLGLGKYADARKTAEDALALGVEGPLMASLKIVLGD ISYAEKKFDEAAKHYGVTAELFVNDAELKPKALFKAAEALDKAGRKSEASQYRARLQKEFPDWKQDGESLPPDAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88789; Mature: 88789
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSAAQENIPDAAPIADGPLVANPEQDTLDMADMLYKQAQAPATKENRQEYGRLLDLSLR CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH KYLEFTQRFPQSAQAPLAEYRAAMCLEELGRKDEAHGLFLRLIQTGSPALVAASAYRLAT HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHC DASSAGEIDKAIQYYQLVIRNAEQNDLKVDAQYRLGRLFLSSGNPEAAATMFCAVMGNPE CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC ADAKFVLVSRMGYAALCADTGRLGEAYSEYRKVLETPGVDNRNRGIATLQAAMLATKLKK CCCEEEEEHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH TAEAQGLYERLLKDESLKEMAPEARMGLLLGLYNMGKYREILSQYEQQKGIKMPTKDGQV HHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCE RLLMLLGQSAYKLKEYRKAADFFLEAEKSVPYTQEAMQASFYRLLCYNELKQKDLPQRAQ EEHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH SFLNHYAKAFPTSELHDMVRLMAAENLFSSNPADAARFYASIDFDKVPPKMRADILYKSA HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHH WAIAQAGNRGVAAKLLTDFINDFPKDPRICEALTLRGDMYAKTKKEAEALMDFDRVIARW HHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC PKAESAAAAWQRAAQIYAGRQDMANMAKYYEGLIQNFPKASPAALAEAHFLLGRAAFDQG CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC DFKSSISHMAEAKTLDPQKYGEQVNVLSVLSYHKLQDVNKLKEALETLQKENPSAVARVP HHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH DVIPAWLGLQAYGMKDLETADKYMTWATQNDQLQNVKKVIWRNLAKVRLALRKYDRALVA HHHHHHHCHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SNNFLKDEDQPYRRADGMLDKASILLGLGKYADARKTAEDALALGVEGPLMASLKIVLGD CCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH ISYAEKKFDEAAKHYGVTAELFVNDAELKPKALFKAAEALDKAGRKSEASQYRARLQKEF HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC PDWKQDGESLPPDAR CCHHHCCCCCCCCCC >Mature Secondary Structure MFSAAQENIPDAAPIADGPLVANPEQDTLDMADMLYKQAQAPATKENRQEYGRLLDLSLR CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH KYLEFTQRFPQSAQAPLAEYRAAMCLEELGRKDEAHGLFLRLIQTGSPALVAASAYRLAT HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHC DASSAGEIDKAIQYYQLVIRNAEQNDLKVDAQYRLGRLFLSSGNPEAAATMFCAVMGNPE CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC ADAKFVLVSRMGYAALCADTGRLGEAYSEYRKVLETPGVDNRNRGIATLQAAMLATKLKK CCCEEEEEHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH TAEAQGLYERLLKDESLKEMAPEARMGLLLGLYNMGKYREILSQYEQQKGIKMPTKDGQV HHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCE RLLMLLGQSAYKLKEYRKAADFFLEAEKSVPYTQEAMQASFYRLLCYNELKQKDLPQRAQ EEHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH SFLNHYAKAFPTSELHDMVRLMAAENLFSSNPADAARFYASIDFDKVPPKMRADILYKSA HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHH WAIAQAGNRGVAAKLLTDFINDFPKDPRICEALTLRGDMYAKTKKEAEALMDFDRVIARW HHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC PKAESAAAAWQRAAQIYAGRQDMANMAKYYEGLIQNFPKASPAALAEAHFLLGRAAFDQG CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC DFKSSISHMAEAKTLDPQKYGEQVNVLSVLSYHKLQDVNKLKEALETLQKENPSAVARVP HHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH DVIPAWLGLQAYGMKDLETADKYMTWATQNDQLQNVKKVIWRNLAKVRLALRKYDRALVA HHHHHHHCHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SNNFLKDEDQPYRRADGMLDKASILLGLGKYADARKTAEDALALGVEGPLMASLKIVLGD CCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH ISYAEKKFDEAAKHYGVTAELFVNDAELKPKALFKAAEALDKAGRKSEASQYRARLQKEF HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC PDWKQDGESLPPDAR CCHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA