Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735694
Identifier: 187735694
GI number: 187735694
Start: 1436788
End: 1437831
Strand: Reverse
Name: 187735694
Synonym: Amuc_1200
Alternate gene names: NA
Gene position: 1437831-1436788 (Counterclockwise)
Preceding gene: 187735696
Following gene: 187735693
Centisome position: 53.97
GC content: 61.11
Gene sequence:
>1044_bases ATGCATATGGCGGACGGCTTCATCTCACCGGCGGTAGGCTGCACCATGTGGGCGGCTTCCGCTGCAATTACAACGCTCTG CACACGTAAGGTCAGGCAGGAAAAAGAAATGCGGCTCGTCCCGCTCATGGGCGTGCTGGGAGCCTTCATCTTTGCCTGCC AGATGCTGAATTTCACCATTCCGGGCACCGGCTCCAGCGGCCATCTGGGCGGCGGCCTCATCCTGGCGGTCCTTCTGGGG CCGTATGCGGGGTTCCTGGTCATGGCGGCCATCCTGACGGTGCAGGCCCTTTTCTTTGCGGATGGGGGGCTGCTGGCCCT GGGCTGCAATATTTTCAATATGGGGTTTTTCTCCTGCCTGGTAGCTTACCCTTTCATTTACAGGCCCCTGGCCGGAACAA AAACCGGCACGGGCCGCATCACGCTGGCCAGCGTCATCGCCGCCGTCATCGGGCTCCAGATGGGGGCTTTCTCCGTCGTT CTGGAAACAACGGCCTCCGGCATCTCAGCCCTGCCCTTCGCCCAATTTGTTGAATTGATGCTGCCCATTCATCTGGCCAT CGGCGCCGTAGAAGGCCTTGCTACGGCAGCCGTCGTCATCTTCATCAGCAAGGCACAGCCGTCCCTGCTGCGCCCGGCCG ACTTGGAAACCGGAACCGTCAAAAAAGCATCCTGGACCGTTTTGGGCATCTTTGCGGTAGCGGCCCTGCTCTGCGGAGCC GCCCTCTCCTGGTTCGCCTCCGCCTATCCTGACGGACTGGAATGGTCTGTAGCCGGAGTCACCGGGTCGGAAGAAACCAG GCTGGCGGAACCGTCCCCCCTCCACCGGAACCTGGAAACCGTACAGGAGGCCACCGCCATTATGCCGGACTACGCCTTTC CCGCTGATGACGGGGCAAACACCGCAGAAACGGAAGCTTCCTCCTCCATTGTCAACCCTGAAACGAGCATGGCCGGCGTG CTGGGAAGCGCCATTATTGCAGCCCTTATTTTTGCGGCCGGTTTCCTGTTCGGCAGAAAACCGCACAGCCACTGCCCCCG CTGA
Upstream 100 bases:
>100_bases TTCTTCGGCTTTGCGGCGTTTATGCTAAAGTGGTGCCAATCTGCCCGGTACGGGGCTTTCAGCAATACTTCACACTATTC AATAGAAAGGCATCAACATC
Downstream 100 bases:
>100_bases CCCTCCCCATGCCACTGTTTACGGACGCCTCGCAGCAATTCCGCCAGATGGATCGGTTTTCCTGCGGAAATACCGGCATC CACCGTCTGGACGCCCGCAT
Product: cobalamin (vitamin B12) biosynthesis CbiM protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 347; Mature: 347
Protein sequence:
>347_residues MHMADGFISPAVGCTMWAASAAITTLCTRKVRQEKEMRLVPLMGVLGAFIFACQMLNFTIPGTGSSGHLGGGLILAVLLG PYAGFLVMAAILTVQALFFADGGLLALGCNIFNMGFFSCLVAYPFIYRPLAGTKTGTGRITLASVIAAVIGLQMGAFSVV LETTASGISALPFAQFVELMLPIHLAIGAVEGLATAAVVIFISKAQPSLLRPADLETGTVKKASWTVLGIFAVAALLCGA ALSWFASAYPDGLEWSVAGVTGSEETRLAEPSPLHRNLETVQEATAIMPDYAFPADDGANTAETEASSSIVNPETSMAGV LGSAIIAALIFAAGFLFGRKPHSHCPR
Sequences:
>Translated_347_residues MHMADGFISPAVGCTMWAASAAITTLCTRKVRQEKEMRLVPLMGVLGAFIFACQMLNFTIPGTGSSGHLGGGLILAVLLG PYAGFLVMAAILTVQALFFADGGLLALGCNIFNMGFFSCLVAYPFIYRPLAGTKTGTGRITLASVIAAVIGLQMGAFSVV LETTASGISALPFAQFVELMLPIHLAIGAVEGLATAAVVIFISKAQPSLLRPADLETGTVKKASWTVLGIFAVAALLCGA ALSWFASAYPDGLEWSVAGVTGSEETRLAEPSPLHRNLETVQEATAIMPDYAFPADDGANTAETEASSSIVNPETSMAGV LGSAIIAALIFAAGFLFGRKPHSHCPR >Mature_347_residues MHMADGFISPAVGCTMWAASAAITTLCTRKVRQEKEMRLVPLMGVLGAFIFACQMLNFTIPGTGSSGHLGGGLILAVLLG PYAGFLVMAAILTVQALFFADGGLLALGCNIFNMGFFSCLVAYPFIYRPLAGTKTGTGRITLASVIAAVIGLQMGAFSVV LETTASGISALPFAQFVELMLPIHLAIGAVEGLATAAVVIFISKAQPSLLRPADLETGTVKKASWTVLGIFAVAALLCGA ALSWFASAYPDGLEWSVAGVTGSEETRLAEPSPLHRNLETVQEATAIMPDYAFPADDGANTAETEASSSIVNPETSMAGV LGSAIIAALIFAAGFLFGRKPHSHCPR
Specific function: Unknown
COG id: COG0310
COG function: function code P; ABC-type Co2+ transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002751 [H]
Pfam domain/function: PF01891 CbiM [H]
EC number: NA
Molecular weight: Translated: 35979; Mature: 35979
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHMADGFISPAVGCTMWAASAAITTLCTRKVRQEKEMRLVPLMGVLGAFIFACQMLNFTI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PGTGSSGHLGGGLILAVLLGPYAGFLVMAAILTVQALFFADGGLLALGCNIFNMGFFSCL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHH VAYPFIYRPLAGTKTGTGRITLASVIAAVIGLQMGAFSVVLETTASGISALPFAQFVELM HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LPIHLAIGAVEGLATAAVVIFISKAQPSLLRPADLETGTVKKASWTVLGIFAVAALLCGA HHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH ALSWFASAYPDGLEWSVAGVTGSEETRLAEPSPLHRNLETVQEATAIMPDYAFPADDGAN HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC TAETEASSSIVNPETSMAGVLGSAIIAALIFAAGFLFGRKPHSHCPR CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MHMADGFISPAVGCTMWAASAAITTLCTRKVRQEKEMRLVPLMGVLGAFIFACQMLNFTI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PGTGSSGHLGGGLILAVLLGPYAGFLVMAAILTVQALFFADGGLLALGCNIFNMGFFSCL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHH VAYPFIYRPLAGTKTGTGRITLASVIAAVIGLQMGAFSVVLETTASGISALPFAQFVELM HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LPIHLAIGAVEGLATAAVVIFISKAQPSLLRPADLETGTVKKASWTVLGIFAVAALLCGA HHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH ALSWFASAYPDGLEWSVAGVTGSEETRLAEPSPLHRNLETVQEATAIMPDYAFPADDGAN HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC TAETEASSSIVNPETSMAGVLGSAIIAALIFAAGFLFGRKPHSHCPR CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]