Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735655
Identifier: 187735655
GI number: 187735655
Start: 1392964
End: 1393392
Strand: Reverse
Name: 187735655
Synonym: Amuc_1161
Alternate gene names: NA
Gene position: 1393392-1392964 (Counterclockwise)
Preceding gene: 187735658
Following gene: 187735630
Centisome position: 52.3
GC content: 48.48
Gene sequence:
>429_bases ATGTGCCTTTCCATTTCGGAAGTCTCGGAATTGACAGGCATCACGCCGTCCAATCTGCGTTTTTTTGAAGAAGAAGGAAT CCTGGACATCCCGAGAAACGGGGCGGGATGCCGTGTCTTCCACCGCAAGGAAATGGAAGAACTTCTGGGGCTGGTTTGCC TTAAGCATTCTGGATTGGAACTCAAGGAGATCAAACGCTTTTTTCACCTGGTTCGCCAAGGTAATTCGACATTGCGCGAA CGTTACCGCATGTTGCAGGAAGGGCATCAGGCCATGAAAACGCGCATTCGGGAACTGAAAAAATGCCTGAAATACTCCAA AATCAAAATGGAGTATATCGGCCAGTGCTGCGAGGCATATGACAAAGGCGAACCTCTGCCACAGGTGAACCCGGAATGGA TGGATTCCTTCCTGAAACAAAAAATTTGA
Upstream 100 bases:
>100_bases GCTTCCCCGCCCATACACGGAAATTGTCGTTTCCCGCAGCCTAAGAAAAAGCCATAGTGTCTTCATGCAAGACGCATCAG AACTTGGAGAACAGAAAGAC
Downstream 100 bases:
>100_bases AGAAGGTGCTGACGCCTGGGCCTGCTGCCGGGAGGGGCAAATGGAGGCTACTCGCTTCACGCAACAACACATCCCCTTCT TCCGGCAGAATGCTTTCAGA
Product: MerR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 142; Mature: 142
Protein sequence:
>142_residues MCLSISEVSELTGITPSNLRFFEEEGILDIPRNGAGCRVFHRKEMEELLGLVCLKHSGLELKEIKRFFHLVRQGNSTLRE RYRMLQEGHQAMKTRIRELKKCLKYSKIKMEYIGQCCEAYDKGEPLPQVNPEWMDSFLKQKI
Sequences:
>Translated_142_residues MCLSISEVSELTGITPSNLRFFEEEGILDIPRNGAGCRVFHRKEMEELLGLVCLKHSGLELKEIKRFFHLVRQGNSTLRE RYRMLQEGHQAMKTRIRELKKCLKYSKIKMEYIGQCCEAYDKGEPLPQVNPEWMDSFLKQKI >Mature_142_residues MCLSISEVSELTGITPSNLRFFEEEGILDIPRNGAGCRVFHRKEMEELLGLVCLKHSGLELKEIKRFFHLVRQGNSTLRE RYRMLQEGHQAMKTRIRELKKCLKYSKIKMEYIGQCCEAYDKGEPLPQVNPEWMDSFLKQKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH merR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009061 - InterPro: IPR000551 - InterPro: IPR015358 [H]
Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]
EC number: NA
Molecular weight: Translated: 16653; Mature: 16653
Theoretical pI: Translated: 8.60; Mature: 8.60
Prosite motif: PS50937 HTH_MERR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.2 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 8.5 %Cys+Met (Translated Protein) 4.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 8.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCLSISEVSELTGITPSNLRFFEEEGILDIPRNGAGCRVFHRKEMEELLGLVCLKHSGLE CCCCHHHHHHHHCCCCHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC LKEIKRFFHLVRQGNSTLRERYRMLQEGHQAMKTRIRELKKCLKYSKIKMEYIGQCCEAY HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DKGEPLPQVNPEWMDSFLKQKI HCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure MCLSISEVSELTGITPSNLRFFEEEGILDIPRNGAGCRVFHRKEMEELLGLVCLKHSGLE CCCCHHHHHHHHCCCCHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC LKEIKRFFHLVRQGNSTLRERYRMLQEGHQAMKTRIRELKKCLKYSKIKMEYIGQCCEAY HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DKGEPLPQVNPEWMDSFLKQKI HCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]