Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735618
Identifier: 187735618
GI number: 187735618
Start: 1344712
End: 1346214
Strand: Reverse
Name: 187735618
Synonym: Amuc_1123
Alternate gene names: NA
Gene position: 1346214-1344712 (Counterclockwise)
Preceding gene: 187735619
Following gene: 187735617
Centisome position: 50.53
GC content: 57.82
Gene sequence:
>1503_bases ATGAGTCTCCACATTGAAAGTACTGAAAATGCCCTTGCGGAATTGAAGAAGCAGCGGACCAAGACACTGACCGCCGCCAT TTCCGTCTCCTTCCTCGGCATCGCCCTCATGGGCCTCCTCCTCTACCTGGTGCACATCATCGTGGCCGTTCCGGAAGATC CCCCCATGGTCGCCTATGCCACCCAGGAAGGCGACAACCCGGACATCGACACGCCGGAAGTTACCCAGACCACCCAGCGC CCCAGCAGTTCCTCCACCTCCGCGCAGGTGAAGGTCATCGCCGCCGTCGCCACGGCGGACGTCGCGGTGGTCAACCCGGA TATTGAGGTGGACGTCCCCTCGGAAGAACTTTCCATGGGCATCGACATCGGCGACGGCTTCGGCACCGGCACGGGCGACG GAGACGGGGGAGGCATTCCCGGCATCATCTCCAAGCGCTGCGATTTGAACGACCGCATGAAGCGCATCACGGAAAACGGA GGCACTCCGCAGTGCGAGGAAGCCGTAGTCAAATCCCTCCGCTGGCTGAAAAAACAGCAGAACGGCAACGGCTCCTGGGG TGAAGGACAATTCCGCGCTTCCATGACCGGCATTTCCCTGCTGGCCTACCTGGCCCACTGTGAAACCCCTCTTTCCGAGG AATTCGGAGAAAACGTCCTGAAAGGCATTTCCTTCCTGGTGGACTTAGGCATGAAAAACCCCGTCCTTTCGGAACAGCCC GCCCTGAAGGAAATCTGTTATGACCACGCGGTAGCCACCTATGCCCTGTGCGAAGCCTACACCTTCTGCAAGCAGATGGA CATCCCCTCCATCTCCAATCTGGAAAAGGTCGTCGTAAAAGCCGTGGACAGGATTATTGACGCCCAGTGCCCCAACGGGG GTTGGGGCTACAGCTACAACAACAAGATTAATCCGGACATCGACCTTTCCGTCACCGGATGGAACGTACAGGCCCTCAAG GCTGCCGAACACGGCGGCGTCAAGCCTACCAAAGGGGAAATCCGCTCCACGCTGCGCAAGGCCTCAAGCTACGTGCGCAA GAACGTCATGCCGGACGGTAAGTTTTCCTATAAGGAAAACGGCAATATGCCCCGTTCCTCCCTGGTAGGCGTGGGCGTGC TTTCTCTGCAAATGACGGGCAACGGCTCGGACAGCGCCGCCCGCAAGGGTCTGGACTGGATCAAAAACAATGTCAAAAAC CTCCAGTGGGGCCAGGGAAGCGGCACGGAAAACGTCAAGAGCAATCTCTACATGCATTACTACTGCGTGCAGGCTGCCAT GAACCGCGGAGGAGACGTATGGACCTCTTACAACAAAGCATTCCGGGACGCCGTGCTCAGCGGCCAGAATGCGGACGGCA GTTTCCGGAAAAATGACGTAGGATACGTTTCCGGCATGAGCAATAAATCTGAAAACATCTACCGCCAGTGCCTGGCAACG CTGATGCTGGAAACCTATTACCGTTTCCTGCCTGGTACGGGGGAAGGCACCAAGAACTCCTGA
Upstream 100 bases:
>100_bases AAACAGGCAGGCCAGCAATACATACCTGTACAGGGCAATTCTCCCCATTTTTCAGAAATGCGGGAGTTTTTGCCTTGATG CTAACCAGACACCTCCCTCT
Downstream 100 bases:
>100_bases GGCATCCCTCCGAATAACGAAAAGAGCGCCGCGGGAAAAGGTTCTGCATGCGAGAAAACGAACCTTCTTCCGGCGGCGCG CAAATTAAATCCTGACTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 500; Mature: 499
Protein sequence:
>500_residues MSLHIESTENALAELKKQRTKTLTAAISVSFLGIALMGLLLYLVHIIVAVPEDPPMVAYATQEGDNPDIDTPEVTQTTQR PSSSSTSAQVKVIAAVATADVAVVNPDIEVDVPSEELSMGIDIGDGFGTGTGDGDGGGIPGIISKRCDLNDRMKRITENG GTPQCEEAVVKSLRWLKKQQNGNGSWGEGQFRASMTGISLLAYLAHCETPLSEEFGENVLKGISFLVDLGMKNPVLSEQP ALKEICYDHAVATYALCEAYTFCKQMDIPSISNLEKVVVKAVDRIIDAQCPNGGWGYSYNNKINPDIDLSVTGWNVQALK AAEHGGVKPTKGEIRSTLRKASSYVRKNVMPDGKFSYKENGNMPRSSLVGVGVLSLQMTGNGSDSAARKGLDWIKNNVKN LQWGQGSGTENVKSNLYMHYYCVQAAMNRGGDVWTSYNKAFRDAVLSGQNADGSFRKNDVGYVSGMSNKSENIYRQCLAT LMLETYYRFLPGTGEGTKNS
Sequences:
>Translated_500_residues MSLHIESTENALAELKKQRTKTLTAAISVSFLGIALMGLLLYLVHIIVAVPEDPPMVAYATQEGDNPDIDTPEVTQTTQR PSSSSTSAQVKVIAAVATADVAVVNPDIEVDVPSEELSMGIDIGDGFGTGTGDGDGGGIPGIISKRCDLNDRMKRITENG GTPQCEEAVVKSLRWLKKQQNGNGSWGEGQFRASMTGISLLAYLAHCETPLSEEFGENVLKGISFLVDLGMKNPVLSEQP ALKEICYDHAVATYALCEAYTFCKQMDIPSISNLEKVVVKAVDRIIDAQCPNGGWGYSYNNKINPDIDLSVTGWNVQALK AAEHGGVKPTKGEIRSTLRKASSYVRKNVMPDGKFSYKENGNMPRSSLVGVGVLSLQMTGNGSDSAARKGLDWIKNNVKN LQWGQGSGTENVKSNLYMHYYCVQAAMNRGGDVWTSYNKAFRDAVLSGQNADGSFRKNDVGYVSGMSNKSENIYRQCLAT LMLETYYRFLPGTGEGTKNS >Mature_499_residues SLHIESTENALAELKKQRTKTLTAAISVSFLGIALMGLLLYLVHIIVAVPEDPPMVAYATQEGDNPDIDTPEVTQTTQRP SSSSTSAQVKVIAAVATADVAVVNPDIEVDVPSEELSMGIDIGDGFGTGTGDGDGGGIPGIISKRCDLNDRMKRITENGG TPQCEEAVVKSLRWLKKQQNGNGSWGEGQFRASMTGISLLAYLAHCETPLSEEFGENVLKGISFLVDLGMKNPVLSEQPA LKEICYDHAVATYALCEAYTFCKQMDIPSISNLEKVVVKAVDRIIDAQCPNGGWGYSYNNKINPDIDLSVTGWNVQALKA AEHGGVKPTKGEIRSTLRKASSYVRKNVMPDGKFSYKENGNMPRSSLVGVGVLSLQMTGNGSDSAARKGLDWIKNNVKNL QWGQGSGTENVKSNLYMHYYCVQAAMNRGGDVWTSYNKAFRDAVLSGQNADGSFRKNDVGYVSGMSNKSENIYRQCLATL MLETYYRFLPGTGEGTKNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54078; Mature: 53947
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLHIESTENALAELKKQRTKTLTAAISVSFLGIALMGLLLYLVHIIVAVPEDPPMVAYA CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE TQEGDNPDIDTPEVTQTTQRPSSSSTSAQVKVIAAVATADVAVVNPDIEVDVPSEELSMG ECCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEHHCCEEEECCCCEEECCHHHHHCC IDIGDGFGTGTGDGDGGGIPGIISKRCDLNDRMKRITENGGTPQCEEAVVKSLRWLKKQQ EECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC NGNGSWGEGQFRASMTGISLLAYLAHCETPLSEEFGENVLKGISFLVDLGMKNPVLSEQP CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH ALKEICYDHAVATYALCEAYTFCKQMDIPSISNLEKVVVKAVDRIIDAQCPNGGWGYSYN HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NKINPDIDLSVTGWNVQALKAAEHGGVKPTKGEIRSTLRKASSYVRKNVMPDGKFSYKEN CCCCCCCEEEEECCCHHEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC GNMPRSSLVGVGVLSLQMTGNGSDSAARKGLDWIKNNVKNLQWGQGSGTENVKSNLYMHY CCCCHHHHHEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCHHHHH YCVQAAMNRGGDVWTSYNKAFRDAVLSGQNADGSFRKNDVGYVSGMSNKSENIYRQCLAT HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHH LMLETYYRFLPGTGEGTKNS HHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SLHIESTENALAELKKQRTKTLTAAISVSFLGIALMGLLLYLVHIIVAVPEDPPMVAYA EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE TQEGDNPDIDTPEVTQTTQRPSSSSTSAQVKVIAAVATADVAVVNPDIEVDVPSEELSMG ECCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEHHCCEEEECCCCEEECCHHHHHCC IDIGDGFGTGTGDGDGGGIPGIISKRCDLNDRMKRITENGGTPQCEEAVVKSLRWLKKQQ EECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC NGNGSWGEGQFRASMTGISLLAYLAHCETPLSEEFGENVLKGISFLVDLGMKNPVLSEQP CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH ALKEICYDHAVATYALCEAYTFCKQMDIPSISNLEKVVVKAVDRIIDAQCPNGGWGYSYN HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NKINPDIDLSVTGWNVQALKAAEHGGVKPTKGEIRSTLRKASSYVRKNVMPDGKFSYKEN CCCCCCCEEEEECCCHHEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC GNMPRSSLVGVGVLSLQMTGNGSDSAARKGLDWIKNNVKNLQWGQGSGTENVKSNLYMHY CCCCHHHHHEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCHHHHH YCVQAAMNRGGDVWTSYNKAFRDAVLSGQNADGSFRKNDVGYVSGMSNKSENIYRQCLAT HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHH LMLETYYRFLPGTGEGTKNS HHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA