Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735558
Identifier: 187735558
GI number: 187735558
Start: 1269356
End: 1270381
Strand: Reverse
Name: 187735558
Synonym: Amuc_1063
Alternate gene names: NA
Gene position: 1270381-1269356 (Counterclockwise)
Preceding gene: 187735559
Following gene: 187735557
Centisome position: 47.69
GC content: 56.04
Gene sequence:
>1026_bases ATGAACCAGCACACGCGCAACATCATTGTGGATTCCCTCATCCTGGTAGCTTTCAGCTCCCTCCTCGGCGGTCTCAGCCT GTTGGTCTCCAAATCTTTCTCCGGAGATCCCAACCCGGCCCTGGACCTTATCACCGTAATGAAGAAAGCGGAGGCCAAAG AAGTCAACGCTTCCTCCGAACAGGAGGAGAAGGAAGCCCGAGTCAAGGGAATGAAGGAATTCGAACAAACCCTGAAGGAA GGGGAAGAACTGGCTGCGGCAGAAGGAAAGGCTTTTGTCAACATGACGGATCCCCATGGCAGAACTCCTGTCATGTGGGT ATGCTACGCCAACTACAACAACATTGAGACCACGCTGAAGCTGGAAGCCACTCGGGCCCCCTATCTGGACCGGCTTCTGG AAGACCCCCGCGTGGAAATCGACCGGAAGGACAAGGACGGGTGGACCGCGCTGCACTGGGCTTCCTGGAGCGGGCTGGAC CGCCTGTCCGACATGTTGATTGAAAGGAAAGCAGACATCAACAACCGGGAGGGCAACGGCTTTACGCCCCTCATGCTGGC AGCCATGCGCGGCAATTTCCAGGTGGCGGCCCTGCTGCTGGAAAAAGGAGCGGATATGACTGCCGTCAACAAATTCGGGA AAAACGCCCTTCAACTGGCGGAAGAAGGAGCTCTCGCTTATCAATCCAGCTTTGACCTCACCAAGACGGAAGTTTCCAAA GCCCCGGTGGATTCCTTCATCCGTGCTTATGAAAAGGCCGTGGCCGGCCTGCCGCCCGAACATGCCCCGGAATTCATGGA AGCCATGAAAAAAGCCGTGGGACGCCAGTCTTTCGTGGAAACAGGGTACGTCCTCCAGCTCATCACGCGCTCCCTGAGCT CCAAAAACCTGCTCACGGAAGAACAGTCCGGTAAATTCCGGGAGGAAATCACCGGAGCAATCGCGGAAAACTCCCGGATC ATTGATGTCCGCGGCGTAGCTTTTGAACACACTGTGGACCTGCTCCGCAAAGCGGCGGAAAAATAA
Upstream 100 bases:
>100_bases AGACGCGGCATCGCCACCCATCAGCGCCATTGAAGCGGAAACGGATCCCGCCCTGACGGCGGAAGAACTTACGGAAGCCA ACTCCTGACCTTACGAGACC
Downstream 100 bases:
>100_bases CGGCCTTTCCTTCAGGGTTCAGACATCCGCCACTTTTGCTCTTGACGCTTTCACGGCTCCTTTCTAGGATTCGCGGCATA CCATGGTTAGAGCATTGCGC
Product: Ankyrin
Products: NA
Alternate protein names: Ankyrin Repeat-Containing Protein
Number of amino acids: Translated: 341; Mature: 341
Protein sequence:
>341_residues MNQHTRNIIVDSLILVAFSSLLGGLSLLVSKSFSGDPNPALDLITVMKKAEAKEVNASSEQEEKEARVKGMKEFEQTLKE GEELAAAEGKAFVNMTDPHGRTPVMWVCYANYNNIETTLKLEATRAPYLDRLLEDPRVEIDRKDKDGWTALHWASWSGLD RLSDMLIERKADINNREGNGFTPLMLAAMRGNFQVAALLLEKGADMTAVNKFGKNALQLAEEGALAYQSSFDLTKTEVSK APVDSFIRAYEKAVAGLPPEHAPEFMEAMKKAVGRQSFVETGYVLQLITRSLSSKNLLTEEQSGKFREEITGAIAENSRI IDVRGVAFEHTVDLLRKAAEK
Sequences:
>Translated_341_residues MNQHTRNIIVDSLILVAFSSLLGGLSLLVSKSFSGDPNPALDLITVMKKAEAKEVNASSEQEEKEARVKGMKEFEQTLKE GEELAAAEGKAFVNMTDPHGRTPVMWVCYANYNNIETTLKLEATRAPYLDRLLEDPRVEIDRKDKDGWTALHWASWSGLD RLSDMLIERKADINNREGNGFTPLMLAAMRGNFQVAALLLEKGADMTAVNKFGKNALQLAEEGALAYQSSFDLTKTEVSK APVDSFIRAYEKAVAGLPPEHAPEFMEAMKKAVGRQSFVETGYVLQLITRSLSSKNLLTEEQSGKFREEITGAIAENSRI IDVRGVAFEHTVDLLRKAAEK >Mature_341_residues MNQHTRNIIVDSLILVAFSSLLGGLSLLVSKSFSGDPNPALDLITVMKKAEAKEVNASSEQEEKEARVKGMKEFEQTLKE GEELAAAEGKAFVNMTDPHGRTPVMWVCYANYNNIETTLKLEATRAPYLDRLLEDPRVEIDRKDKDGWTALHWASWSGLD RLSDMLIERKADINNREGNGFTPLMLAAMRGNFQVAALLLEKGADMTAVNKFGKNALQLAEEGALAYQSSFDLTKTEVSK APVDSFIRAYEKAVAGLPPEHAPEFMEAMKKAVGRQSFVETGYVLQLITRSLSSKNLLTEEQSGKFREEITGAIAENSRI IDVRGVAFEHTVDLLRKAAEK
Specific function: Unknown
COG id: COG0666
COG function: function code R; FOG: Ankyrin repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI148596917, Length=150, Percent_Identity=29.3333333333333, Blast_Score=66, Evalue=5e-11, Organism=Drosophila melanogaster, GI24650843, Length=153, Percent_Identity=30.0653594771242, Blast_Score=69, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37784; Mature: 37784
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQHTRNIIVDSLILVAFSSLLGGLSLLVSKSFSGDPNPALDLITVMKKAEAKEVNASSE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH QEEKEARVKGMKEFEQTLKEGEELAAAEGKAFVNMTDPHGRTPVMWVCYANYNNIETTLK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEE LEATRAPYLDRLLEDPRVEIDRKDKDGWTALHWASWSGLDRLSDMLIERKADINNREGNG EECCCCHHHHHHHCCCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCC FTPLMLAAMRGNFQVAALLLEKGADMTAVNKFGKNALQLAEEGALAYQSSFDLTKTEVSK CHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHCCHHHHCCCCCHHHHHHH APVDSFIRAYEKAVAGLPPEHAPEFMEAMKKAVGRQSFVETGYVLQLITRSLSSKNLLTE CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCC EQSGKFREEITGAIAENSRIIDVRGVAFEHTVDLLRKAAEK HHCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCC >Mature Secondary Structure MNQHTRNIIVDSLILVAFSSLLGGLSLLVSKSFSGDPNPALDLITVMKKAEAKEVNASSE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH QEEKEARVKGMKEFEQTLKEGEELAAAEGKAFVNMTDPHGRTPVMWVCYANYNNIETTLK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEE LEATRAPYLDRLLEDPRVEIDRKDKDGWTALHWASWSGLDRLSDMLIERKADINNREGNG EECCCCHHHHHHHCCCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCC FTPLMLAAMRGNFQVAALLLEKGADMTAVNKFGKNALQLAEEGALAYQSSFDLTKTEVSK CHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHCCHHHHCCCCCHHHHHHH APVDSFIRAYEKAVAGLPPEHAPEFMEAMKKAVGRQSFVETGYVLQLITRSLSSKNLLTE CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCC EQSGKFREEITGAIAENSRIIDVRGVAFEHTVDLLRKAAEK HHCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA