Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735556
Identifier: 187735556
GI number: 187735556
Start: 1267418
End: 1268698
Strand: Reverse
Name: 187735556
Synonym: Amuc_1061
Alternate gene names: NA
Gene position: 1268698-1267418 (Counterclockwise)
Preceding gene: 187735557
Following gene: 187735555
Centisome position: 47.62
GC content: 57.85
Gene sequence:
>1281_bases ATGAAATCCACACCATTCTTCGCCGGAATAGGCCTGGCAGCCCTGCTTAGCTCATGCAGCGTCTACCACAGCGCGCCTAT CGACCTGAACGCGGAGGAAGCCTCCTGGAAAGAGGCATCCCGCGTAGATTCCCCTACCTCAATCACTCAGAACCAGGCTC GCCAGATCGGCCTGGTCATGAATCCGGATCTGAACAAAGCCCGGCTGAAACTGGCTTCCAGCAATGAAGTAGCCAGGCAA TCGGGCTGGTGGAACGATCCCTCCTTTTCCTGGGATATTGAACAAGTCCTCCAGGAAAATACGGTCAACATGTCCGGCAG CCTGGGCTTCACCATTCCCGTAACCGGCCTCCCCGCCCTGGAAAAAAAAGTGGCGGAACAATACAAGGAGGCCGACTTCT GGACCCTCCGCCAGGCTGAACTGGATTTTCTCAGTTCCCTGGACCAAGCATGGAGCCAACTGGCCGTTACCCAGCGCCGC AAGACGGTCATCCGGGAACGGCTGGATGCCATCCGACGGGAAAACGGCATGATTGAACAGCTTATCGGCGCGGGGGAAGT GGATTTTTCCTCTCGGCAGGTAGCCTCCCAGCGGATGAATGACGCTATCCGGGAACTCCAAACCGTGACGGAAACGGAAT TGGAGCAGAAGATGGAACTCGTCAAGCTGATGGGCCTGCATCCTTCTGCGGTGCGGAAACTCGGTTTCCTGACGAAACAG AGTTTCCAGCTTCCCGCCGCCGTACCGGCTCCCGGCCCTTCAGCCTTGACCGCCTCTCCAAAAATCAAGGCACAACTGGC GACCTACGCCACCACGGAGACATTATTCAAAACGGAAATCCGCCGGCAGTACCCGGAACTGGAGCTCGGCCCCTCCTTCA CCCGCGACGAAGGAGAAAAGGAAGTAGGCGGAGAAATAGGGTTCAATCTTCCCCTTTGGAACCGCAACCGCAAGGCTATT GCGGAAGCCCGAGGCACACGGGACTTGTCCAGACAGGAAACCATCCAGCTTTGGAAAACGGAATTATTCAACGCCCGCCA GCTTGACGCAAGCCAGCAGATGGCGCTCCGCCACTGCCGCACGGAACTCCAGCGCATGGAATCCTTCGCCGCCTCCGTCC GGACCATGGAAAAGCTGCACGGCATTGGGGAAGCATCCCTGCTGGAACTGGCGGAAAACCGCCACCAGCTTTACGAAAGC CGCCTGGCTTTCCTGGACAATCTGGACAAGCTTCTGGCCGTTCAGGCCCAGCTCCGCTACCTCACCCACGCCAACCTTTA A
Upstream 100 bases:
>100_bases TGCCTTTAATACGGCGGCCGCTTTTATTTGTTTCCGCGGAATTATTCGCCGCATTGTCCAAACCTGATTGGAGCGAACTG TTTTTATTATCTTTTCCATC
Downstream 100 bases:
>100_bases TCCACATCAACCCTCCACCATCTTTAATGAATATGAAACATCTTTATTTTTCCATCATGCTGGGACTGGCTCCTGCTTTC TGTCTCCATTCCGCACGCGG
Product: Outer membrane protein-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 426; Mature: 426
Protein sequence:
>426_residues MKSTPFFAGIGLAALLSSCSVYHSAPIDLNAEEASWKEASRVDSPTSITQNQARQIGLVMNPDLNKARLKLASSNEVARQ SGWWNDPSFSWDIEQVLQENTVNMSGSLGFTIPVTGLPALEKKVAEQYKEADFWTLRQAELDFLSSLDQAWSQLAVTQRR KTVIRERLDAIRRENGMIEQLIGAGEVDFSSRQVASQRMNDAIRELQTVTETELEQKMELVKLMGLHPSAVRKLGFLTKQ SFQLPAAVPAPGPSALTASPKIKAQLATYATTETLFKTEIRRQYPELELGPSFTRDEGEKEVGGEIGFNLPLWNRNRKAI AEARGTRDLSRQETIQLWKTELFNARQLDASQQMALRHCRTELQRMESFAASVRTMEKLHGIGEASLLELAENRHQLYES RLAFLDNLDKLLAVQAQLRYLTHANL
Sequences:
>Translated_426_residues MKSTPFFAGIGLAALLSSCSVYHSAPIDLNAEEASWKEASRVDSPTSITQNQARQIGLVMNPDLNKARLKLASSNEVARQ SGWWNDPSFSWDIEQVLQENTVNMSGSLGFTIPVTGLPALEKKVAEQYKEADFWTLRQAELDFLSSLDQAWSQLAVTQRR KTVIRERLDAIRRENGMIEQLIGAGEVDFSSRQVASQRMNDAIRELQTVTETELEQKMELVKLMGLHPSAVRKLGFLTKQ SFQLPAAVPAPGPSALTASPKIKAQLATYATTETLFKTEIRRQYPELELGPSFTRDEGEKEVGGEIGFNLPLWNRNRKAI AEARGTRDLSRQETIQLWKTELFNARQLDASQQMALRHCRTELQRMESFAASVRTMEKLHGIGEASLLELAENRHQLYES RLAFLDNLDKLLAVQAQLRYLTHANL >Mature_426_residues MKSTPFFAGIGLAALLSSCSVYHSAPIDLNAEEASWKEASRVDSPTSITQNQARQIGLVMNPDLNKARLKLASSNEVARQ SGWWNDPSFSWDIEQVLQENTVNMSGSLGFTIPVTGLPALEKKVAEQYKEADFWTLRQAELDFLSSLDQAWSQLAVTQRR KTVIRERLDAIRRENGMIEQLIGAGEVDFSSRQVASQRMNDAIRELQTVTETELEQKMELVKLMGLHPSAVRKLGFLTKQ SFQLPAAVPAPGPSALTASPKIKAQLATYATTETLFKTEIRRQYPELELGPSFTRDEGEKEVGGEIGFNLPLWNRNRKAI AEARGTRDLSRQETIQLWKTELFNARQLDASQQMALRHCRTELQRMESFAASVRTMEKLHGIGEASLLELAENRHQLYES RLAFLDNLDKLLAVQAQLRYLTHANL
Specific function: Unknown
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47902; Mature: 47902
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSTPFFAGIGLAALLSSCSVYHSAPIDLNAEEASWKEASRVDSPTSITQNQARQIGLVM CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCEEE NPDLNKARLKLASSNEVARQSGWWNDPSFSWDIEQVLQENTVNMSGSLGFTIPVTGLPAL CCCCCHHHEEECCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCHHH EKKVAEQYKEADFWTLRQAELDFLSSLDQAWSQLAVTQRRKTVIRERLDAIRRENGMIEQ HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH LIGAGEVDFSSRQVASQRMNDAIRELQTVTETELEQKMELVKLMGLHPSAVRKLGFLTKQ HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH SFQLPAAVPAPGPSALTASPKIKAQLATYATTETLFKTEIRRQYPELELGPSFTRDEGEK CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH EVGGEIGFNLPLWNRNRKAIAEARGTRDLSRQETIQLWKTELFNARQLDASQQMALRHCR HCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHH TELQRMESFAASVRTMEKLHGIGEASLLELAENRHQLYESRLAFLDNLDKLLAVQAQLRY HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTHANL HHHCCC >Mature Secondary Structure MKSTPFFAGIGLAALLSSCSVYHSAPIDLNAEEASWKEASRVDSPTSITQNQARQIGLVM CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCEEE NPDLNKARLKLASSNEVARQSGWWNDPSFSWDIEQVLQENTVNMSGSLGFTIPVTGLPAL CCCCCHHHEEECCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCHHH EKKVAEQYKEADFWTLRQAELDFLSSLDQAWSQLAVTQRRKTVIRERLDAIRRENGMIEQ HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH LIGAGEVDFSSRQVASQRMNDAIRELQTVTETELEQKMELVKLMGLHPSAVRKLGFLTKQ HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH SFQLPAAVPAPGPSALTASPKIKAQLATYATTETLFKTEIRRQYPELELGPSFTRDEGEK CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH EVGGEIGFNLPLWNRNRKAIAEARGTRDLSRQETIQLWKTELFNARQLDASQQMALRHCR HCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHH TELQRMESFAASVRTMEKLHGIGEASLLELAENRHQLYESRLAFLDNLDKLLAVQAQLRY HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTHANL HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA