Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735553
Identifier: 187735553
GI number: 187735553
Start: 1261959
End: 1262585
Strand: Reverse
Name: 187735553
Synonym: Amuc_1058
Alternate gene names: NA
Gene position: 1262585-1261959 (Counterclockwise)
Preceding gene: 187735554
Following gene: 187735547
Centisome position: 47.39
GC content: 58.69
Gene sequence:
>627_bases ATGCCCAAACGGAAATCCACCAGAGAGCACCTGCTCAATACGGGTGCCATGATTGTCGGGGAATCCGGGCTGCGCGCCCT TACCGTTCGCGGCCTGTCCCTGCGGGCCGGCACCAATACAGGGAGCTTTGTCTATCACTTCGGCAACCGGGAAGCTTTTC TGACCGAGCTTCTGGAACGCTGGTACGAACCTCTGTTCACCGGCATCAGGACCCATGCCAACATTCATCTTCCGGCCTTT GAAAAACTGGAAGCCATCCTGGGAGACGTCATGGAGTTCCTGCTGCGTCACGGCCAATTCATTGCCCAGCTGGTTCTGGA CGCCCTGGCAGGGGAACAGGCGGCCATCCGTTTCATTTCAGGAATCCATACGCGCCATCCCCTTGTGCTGCTGGAAACCA TACGGGAAGCCCAGCAGGAAGGATCCGTGCTCATGGGAGACCCCATGAACATCCTCATTTACCTTGTCTGCTGCGGGGGA GCCCCCTTTATCCTTTCCGGACAGCTCCAAGTGCACGACCCCAAAGCAGCTCGGCCCGTTCTCGACTTGCTGGGTTCTAT CCTCAATGATCCGGAAAGCGCCAGACAACGCATGACCTGGGCGCTCCGCGGCATACGGCGGGTCTGA
Upstream 100 bases:
>100_bases GAGGATGAGCCCCGGTTCCGCTTTTTACAGCAACAGACATAACGAGTCCTTGCCTTGCAGGCCGATAAGGGGCACACATG GAGGTTCAAGCTTCACCTTC
Downstream 100 bases:
>100_bases GATTTCAGCAAAGGGGCAGACCGGAAAAACGCGTCGCCTCCCGGCCCCCTGCCGAACCAAAATATCGCCGCCCTTACACG CACGCTCCCTTCTTACCTCC
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: TetR Family Transcriptional Regulator
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MPKRKSTREHLLNTGAMIVGESGLRALTVRGLSLRAGTNTGSFVYHFGNREAFLTELLERWYEPLFTGIRTHANIHLPAF EKLEAILGDVMEFLLRHGQFIAQLVLDALAGEQAAIRFISGIHTRHPLVLLETIREAQQEGSVLMGDPMNILIYLVCCGG APFILSGQLQVHDPKAARPVLDLLGSILNDPESARQRMTWALRGIRRV
Sequences:
>Translated_208_residues MPKRKSTREHLLNTGAMIVGESGLRALTVRGLSLRAGTNTGSFVYHFGNREAFLTELLERWYEPLFTGIRTHANIHLPAF EKLEAILGDVMEFLLRHGQFIAQLVLDALAGEQAAIRFISGIHTRHPLVLLETIREAQQEGSVLMGDPMNILIYLVCCGG APFILSGQLQVHDPKAARPVLDLLGSILNDPESARQRMTWALRGIRRV >Mature_207_residues PKRKSTREHLLNTGAMIVGESGLRALTVRGLSLRAGTNTGSFVYHFGNREAFLTELLERWYEPLFTGIRTHANIHLPAFE KLEAILGDVMEFLLRHGQFIAQLVLDALAGEQAAIRFISGIHTRHPLVLLETIREAQQEGSVLMGDPMNILIYLVCCGGA PFILSGQLQVHDPKAARPVLDLLGSILNDPESARQRMTWALRGIRRV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23143; Mature: 23012
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKRKSTREHLLNTGAMIVGESGLRALTVRGLSLRAGTNTGSFVYHFGNREAFLTELLER CCCCCHHHHHHHHCCCEEECCCCCEEEEEECEEEECCCCCCCEEEEECCCHHHHHHHHHH WYEPLFTGIRTHANIHLPAFEKLEAILGDVMEFLLRHGQFIAQLVLDALAGEQAAIRFIS HHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GIHTRHPLVLLETIREAQQEGSVLMGDPMNILIYLVCCGGAPFILSGQLQVHDPKAARPV HHCCCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCCEEEECEEEECCCHHHHHH LDLLGSILNDPESARQRMTWALRGIRRV HHHHHHHHCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PKRKSTREHLLNTGAMIVGESGLRALTVRGLSLRAGTNTGSFVYHFGNREAFLTELLER CCCCHHHHHHHHCCCEEECCCCCEEEEEECEEEECCCCCCCEEEEECCCHHHHHHHHHH WYEPLFTGIRTHANIHLPAFEKLEAILGDVMEFLLRHGQFIAQLVLDALAGEQAAIRFIS HHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GIHTRHPLVLLETIREAQQEGSVLMGDPMNILIYLVCCGGAPFILSGQLQVHDPKAARPV HHCCCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCCEEEECEEEECCCHHHHHH LDLLGSILNDPESARQRMTWALRGIRRV HHHHHHHHCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA