Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735523
Identifier: 187735523
GI number: 187735523
Start: 1220845
End: 1221495
Strand: Reverse
Name: 187735523
Synonym: Amuc_1028
Alternate gene names: NA
Gene position: 1221495-1220845 (Counterclockwise)
Preceding gene: 187735524
Following gene: 187735520
Centisome position: 45.85
GC content: 54.07
Gene sequence:
>651_bases ATGAAGAGTCTTCTTTTCATTTCAACATTTTTATTGTGTATTTCCGGAGTACAGGCGGCGTCCACTCTGTATGAAACCCA GTTTCATCAAACCAGCATTACTACTGGGAGCGATTTTCTGGAAGATGCTTCCGTCACTCTCACCACTCCTTCCACCGCCC TCTCCAACAATCTGGCAGCGGATCTTCTTGTTCCCAACCTCCAAATGAATGGAAATGAAACCGGTTGGACTGTCACTTTT TCCTTCACAGCTACGCAGGACATCGTCCTTTCTTCCCTCAGCCTAGGTTTTCAATTCGTCAATGCAAGCGGGGAGCGTCA TAGCAATACGGATACTAAAGCGGGAACCGCTACCGTTACGCTGACTGCCGGAGATTCCTCCGCCACGGCTGACCTGAGCT TTGAGCGAGTCCAGGCTGATAAAGACGGCACGCCGACGGCCGATATCCAGGAAGCCAGCTTCAATACCCCGGTCACAGTT AGTGCGGGGGAAACCTTTACCCTCACCGTGAATGCCAAGGCTCCCAACACCGGAGGAACCTTCCTGGGGCTTTCCCAGTT GAATCTTCAGGGGGACACGGTACCGGAGCCGGCGACGGCCTCCCTCAGCCTGCTTGGCATGGCCGCCCTGCTTCTGCGCC GCCGGGTATAA
Upstream 100 bases:
>100_bases ATAAAATTTTATTTTCATAAATCATTAGTAATGTGTGTATTTATCCATTCCCATTTTCCTATCCTCTGTCACCGGATATC TAATCCGCTAACATGGAGCT
Downstream 100 bases:
>100_bases CCGGAAAAGCGTTGAAGTTCTGATTTTTTCCTCTGTCCGAACAGGGCTGTTCCCGGAAACAGCCCTGTTTTTTGTTGAGA AATCCTCTCAGCTTCCGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 216; Mature: 216
Protein sequence:
>216_residues MKSLLFISTFLLCISGVQAASTLYETQFHQTSITTGSDFLEDASVTLTTPSTALSNNLAADLLVPNLQMNGNETGWTVTF SFTATQDIVLSSLSLGFQFVNASGERHSNTDTKAGTATVTLTAGDSSATADLSFERVQADKDGTPTADIQEASFNTPVTV SAGETFTLTVNAKAPNTGGTFLGLSQLNLQGDTVPEPATASLSLLGMAALLLRRRV
Sequences:
>Translated_216_residues MKSLLFISTFLLCISGVQAASTLYETQFHQTSITTGSDFLEDASVTLTTPSTALSNNLAADLLVPNLQMNGNETGWTVTF SFTATQDIVLSSLSLGFQFVNASGERHSNTDTKAGTATVTLTAGDSSATADLSFERVQADKDGTPTADIQEASFNTPVTV SAGETFTLTVNAKAPNTGGTFLGLSQLNLQGDTVPEPATASLSLLGMAALLLRRRV >Mature_216_residues MKSLLFISTFLLCISGVQAASTLYETQFHQTSITTGSDFLEDASVTLTTPSTALSNNLAADLLVPNLQMNGNETGWTVTF SFTATQDIVLSSLSLGFQFVNASGERHSNTDTKAGTATVTLTAGDSSATADLSFERVQADKDGTPTADIQEASFNTPVTV SAGETFTLTVNAKAPNTGGTFLGLSQLNLQGDTVPEPATASLSLLGMAALLLRRRV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22566; Mature: 22566
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLLFISTFLLCISGVQAASTLYETQFHQTSITTGSDFLEDASVTLTTPSTALSNNLAA CCHHHHHHHHHHHHCCHHHHHHHHHHHHCEEECCCCCHHHCCCEEEEECCCHHHHCCCEE DLLVPNLQMNGNETGWTVTFSFTATQDIVLSSLSLGFQFVNASGERHSNTDTKAGTATVT EEEECCEEECCCCCCEEEEEEECCCHHHHHHHHHHCEEEEECCCCCCCCCCCCCCEEEEE LTAGDSSATADLSFERVQADKDGTPTADIQEASFNTPVTVSAGETFTLTVNAKAPNTGGT EEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCC FLGLSQLNLQGDTVPEPATASLSLLGMAALLLRRRV EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKSLLFISTFLLCISGVQAASTLYETQFHQTSITTGSDFLEDASVTLTTPSTALSNNLAA CCHHHHHHHHHHHHCCHHHHHHHHHHHHCEEECCCCCHHHCCCEEEEECCCHHHHCCCEE DLLVPNLQMNGNETGWTVTFSFTATQDIVLSSLSLGFQFVNASGERHSNTDTKAGTATVT EEEECCEEECCCCCCEEEEEEECCCHHHHHHHHHHCEEEEECCCCCCCCCCCCCCEEEEE LTAGDSSATADLSFERVQADKDGTPTADIQEASFNTPVTVSAGETFTLTVNAKAPNTGGT EEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCC FLGLSQLNLQGDTVPEPATASLSLLGMAALLLRRRV EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA