Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735504
Identifier: 187735504
GI number: 187735504
Start: 1204447
End: 1205757
Strand: Direct
Name: 187735504
Synonym: Amuc_1009
Alternate gene names: NA
Gene position: 1204447-1205757 (Clockwise)
Preceding gene: 187735503
Following gene: 187735505
Centisome position: 45.21
GC content: 60.79
Gene sequence:
>1311_bases ATGACCGGCCCCGGACTCATCTCCTTGTTCTGTTTTTTGATAACGGCCGCCTATTTTTTGCGCGGCGGGATGTGTGCGGG CGTTGTTTTGTGCATGGGCTTGGCGTTTTTTTCATTTTCCCGTCGCGGCTGGCTTCGCAGGAGCGTCACGTTTCTGCTGC AGGTTTCCCTGCTTTTCTGGGGGGCGGAAGCCTGGCGTCTGGCCAGGCTGTGGATGATGGAAGGGGGGCCTTTCCTGTTC TGGACTTCCATTCCGGCTGCCGCGCTGTTGCTTCATGCGGCGGCCATTCTATGGCGGAGGCGCGGAGAAAAGAATTTGCC CGTCCCGGAGCTGGCCCGCAGCCGCGTATTTTCCGTTTCCGTATTGCTTCTGTTTTTGCTGGATGCGCTGGTTCCTTTCC GTTTGCTGATGGGGGAGCGCATCTTGCCGTGGCAGGGGGCTAATGGGCTGGCGATTCTTCTCCTGGCCTGGTGGGGCGGC TATTGCGCGGAAGGTTTGTTGAATCCGCAGACGTCTCCGCGCAGGCGGCAGGTGATGTGGACCGTGTTTGCCTCCGCTTT TTTTCTCCAGTTTCTGCTGGGAGTGACGGTGGCTCCCTCCCTGTTGATGACGGGGAAGCTCCATATTCCCGTGCCGTTTA TGATGATTTCCGGCCCGGTTTATCGGGAAGAAGGTTTTTTCATGCTGGCATTGTTCAGCGTATCCGTCCTTATGGCCGGG AGTTCCTGGTGCAGCCATTTGTGCTACTTCGGGGTGTGGGACTGCCTGGCCGCCGCTTCTTCCCGCAGGAAGGGGCATCC GGTGCCGGGTGGGAAAAAAGCCTGTGACTGGAGGTGGTTTTCCCTTGCCGCGGCAGTAGGGATTCCCCTCCTTTTGTCCG TGTGGGGCGTTCCGCTGGGGTATGCCCTGGCGGCGGCGTTCGCCGTAGCTCTCACGGCTCCATTTGCCTGGAAGAGAAGT TCCGAAAACGGTGTGCGGGAATATTGCAGCAGGTTCTGCCCCATGGGGCTGGCCGCCAGTTTGCTGGGCAGGCTGTCCCC GTGGCGCATGCGCGTCAGGGAGACATGCACCGGGTGCATGCGGTGCGCCTCCGCCTGCCGTGATCTCGCCATCTCGCGCG GGGGCGGGGCCTGCCGCATTTCCCGGCGCTGCACCTTGTGCCGCGACTGTATTTCCCGGTGTCCGCATGGCGCTTTGAGC CTCGGCATGGCCGGCCCCTTTTCCTCTGTGCCGTCCGTGCGGGCGGATATGTATTTTGTAACGCTGGTTTCCGTCATGCA TGTGGTCTTCCTGGCCACGGCTCGAATCTGA
Upstream 100 bases:
>100_bases GATGCAATGGGGCTATCTTAACAGGCGGATGAACCGTTTTTTTCTGGCGCGACCGGTCTTTTCCCTTATGTTGGGGGCAC CAGACAGGCCCCACGATGCC
Downstream 100 bases:
>100_bases TTTTATGTTGCCATGAGAGATTCCTGCTCCCTGGAGTATCCGTTTTGCGGAGGATGGATGGCATCTGTCCATTAGGAGGC TTTTTCAGAGCTGCCGTCAG
Product: 4Fe-4S ferredoxin iron-sulfur binding domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MTGPGLISLFCFLITAAYFLRGGMCAGVVLCMGLAFFSFSRRGWLRRSVTFLLQVSLLFWGAEAWRLARLWMMEGGPFLF WTSIPAAALLLHAAAILWRRRGEKNLPVPELARSRVFSVSVLLLFLLDALVPFRLLMGERILPWQGANGLAILLLAWWGG YCAEGLLNPQTSPRRRQVMWTVFASAFFLQFLLGVTVAPSLLMTGKLHIPVPFMMISGPVYREEGFFMLALFSVSVLMAG SSWCSHLCYFGVWDCLAAASSRRKGHPVPGGKKACDWRWFSLAAAVGIPLLLSVWGVPLGYALAAAFAVALTAPFAWKRS SENGVREYCSRFCPMGLAASLLGRLSPWRMRVRETCTGCMRCASACRDLAISRGGGACRISRRCTLCRDCISRCPHGALS LGMAGPFSSVPSVRADMYFVTLVSVMHVVFLATARI
Sequences:
>Translated_436_residues MTGPGLISLFCFLITAAYFLRGGMCAGVVLCMGLAFFSFSRRGWLRRSVTFLLQVSLLFWGAEAWRLARLWMMEGGPFLF WTSIPAAALLLHAAAILWRRRGEKNLPVPELARSRVFSVSVLLLFLLDALVPFRLLMGERILPWQGANGLAILLLAWWGG YCAEGLLNPQTSPRRRQVMWTVFASAFFLQFLLGVTVAPSLLMTGKLHIPVPFMMISGPVYREEGFFMLALFSVSVLMAG SSWCSHLCYFGVWDCLAAASSRRKGHPVPGGKKACDWRWFSLAAAVGIPLLLSVWGVPLGYALAAAFAVALTAPFAWKRS SENGVREYCSRFCPMGLAASLLGRLSPWRMRVRETCTGCMRCASACRDLAISRGGGACRISRRCTLCRDCISRCPHGALS LGMAGPFSSVPSVRADMYFVTLVSVMHVVFLATARI >Mature_435_residues TGPGLISLFCFLITAAYFLRGGMCAGVVLCMGLAFFSFSRRGWLRRSVTFLLQVSLLFWGAEAWRLARLWMMEGGPFLFW TSIPAAALLLHAAAILWRRRGEKNLPVPELARSRVFSVSVLLLFLLDALVPFRLLMGERILPWQGANGLAILLLAWWGGY CAEGLLNPQTSPRRRQVMWTVFASAFFLQFLLGVTVAPSLLMTGKLHIPVPFMMISGPVYREEGFFMLALFSVSVLMAGS SWCSHLCYFGVWDCLAAASSRRKGHPVPGGKKACDWRWFSLAAAVGIPLLLSVWGVPLGYALAAAFAVALTAPFAWKRSS ENGVREYCSRFCPMGLAASLLGRLSPWRMRVRETCTGCMRCASACRDLAISRGGGACRISRRCTLCRDCISRCPHGALSL GMAGPFSSVPSVRADMYFVTLVSVMHVVFLATARI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47986; Mature: 47855
Theoretical pI: Translated: 10.48; Mature: 10.48
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 8.5 %Cys+Met (Translated Protein) 4.4 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 8.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGPGLISLFCFLITAAYFLRGGMCAGVVLCMGLAFFSFSRRGWLRRSVTFLLQVSLLFW CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAEAWRLARLWMMEGGPFLFWTSIPAAALLLHAAAILWRRRGEKNLPVPELARSRVFSVS HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH VLLLFLLDALVPFRLLMGERILPWQGANGLAILLLAWWGGYCAEGLLNPQTSPRRRQVMW HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH TVFASAFFLQFLLGVTVAPSLLMTGKLHIPVPFMMISGPVYREEGFFMLALFSVSVLMAG HHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHCCCEECCCCHHHHHHHHHHHHHHC SSWCSHLCYFGVWDCLAAASSRRKGHPVPGGKKACDWRWFSLAAAVGIPLLLSVWGVPLG CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH YALAAAFAVALTAPFAWKRSSENGVREYCSRFCPMGLAASLLGRLSPWRMRVRETCTGCM HHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHH RCASACRDLAISRGGGACRISRRCTLCRDCISRCPHGALSLGMAGPFSSVPSVRADMYFV HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHH TLVSVMHVVFLATARI HHHHHHHHHHHHHHCC >Mature Secondary Structure TGPGLISLFCFLITAAYFLRGGMCAGVVLCMGLAFFSFSRRGWLRRSVTFLLQVSLLFW CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAEAWRLARLWMMEGGPFLFWTSIPAAALLLHAAAILWRRRGEKNLPVPELARSRVFSVS HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH VLLLFLLDALVPFRLLMGERILPWQGANGLAILLLAWWGGYCAEGLLNPQTSPRRRQVMW HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH TVFASAFFLQFLLGVTVAPSLLMTGKLHIPVPFMMISGPVYREEGFFMLALFSVSVLMAG HHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHCCCEECCCCHHHHHHHHHHHHHHC SSWCSHLCYFGVWDCLAAASSRRKGHPVPGGKKACDWRWFSLAAAVGIPLLLSVWGVPLG CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH YALAAAFAVALTAPFAWKRSSENGVREYCSRFCPMGLAASLLGRLSPWRMRVRETCTGCM HHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHH RCASACRDLAISRGGGACRISRRCTLCRDCISRCPHGALSLGMAGPFSSVPSVRADMYFV HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHH TLVSVMHVVFLATARI HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA